Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_file Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID ref_context gc_content t_alt_count t_ref_count NAT10 55226 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 11 34152413 34152413 + Missense_Mutation SNP A A C rs147641652 TCGA-DH-5143-01A-01D-1468-08 TCGA-DH-5143-10A-01D-1468-08 Untested Somatic Phase_I WXS none Illumina GAIIx f4bbefd2-808c-4646-8bee-3ab3b040b48b ce04e1e1-0343-4378-b34e-203f88ead2a8 CAGCTCCGTCAACAGAGCGCC 0.567 42 144 FOXJ2 55810 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 12 8200512 8200512 + Silent SNP G G A TCGA-DH-5143-01A-01D-1468-08 TCGA-DH-5143-10A-01D-1468-08 Untested Somatic Phase_I WXS none Illumina GAIIx f4bbefd2-808c-4646-8bee-3ab3b040b48b ce04e1e1-0343-4378-b34e-203f88ead2a8 TCCCACCCTCGAACAACTACT 0.567 9 92 PZP 5858 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 12 9317915 9317915 + Silent SNP G G A TCGA-DH-5143-01A-01D-1468-08 TCGA-DH-5143-10A-01D-1468-08 Untested Somatic Phase_I WXS none Illumina GAIIx f4bbefd2-808c-4646-8bee-3ab3b040b48b ce04e1e1-0343-4378-b34e-203f88ead2a8 CCTTCCACTCGGTGATGGTGT 0.537 39 114 MANSC1 54682 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 12 12483294 12483294 + Silent SNP C C T rs146158847 byFrequency TCGA-DH-5143-01A-01D-1468-08 TCGA-DH-5143-10A-01D-1468-08 Untested Somatic Phase_I WXS none Illumina GAIIx f4bbefd2-808c-4646-8bee-3ab3b040b48b ce04e1e1-0343-4378-b34e-203f88ead2a8 TTTCTGTAAACGGTATGGTTT 0.458 24 230 COCH 1690 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 14 31348670 31348670 + Missense_Mutation SNP T T C TCGA-DH-5143-01A-01D-1468-08 TCGA-DH-5143-10A-01D-1468-08 Untested Somatic Phase_I WXS none Illumina GAIIx f4bbefd2-808c-4646-8bee-3ab3b040b48b ce04e1e1-0343-4378-b34e-203f88ead2a8 ACAAGCAGTGTCCACAGCACA 0.393 52 149 TP53 7157 hgsc.bcm.edu;broad.mit.edu 37 17 7577144 7577144 + Missense_Mutation SNP A A C TCGA-DH-5143-01A-01D-1468-08 TCGA-DH-5143-10A-01D-1468-08 Untested Somatic Phase_I WXS none Illumina GAIIx f4bbefd2-808c-4646-8bee-3ab3b040b48b ce04e1e1-0343-4378-b34e-203f88ead2a8 GTTCCGTCCCAGTAGATTACC 0.522 16 37 TP53 7157 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 17 7577538 7577538 + Missense_Mutation SNP C C T rs11540652 TCGA-DH-5143-01A-01D-1468-08 TCGA-DH-5143-10A-01D-1468-08 Untested Somatic Phase_I WXS none Illumina GAIIx f4bbefd2-808c-4646-8bee-3ab3b040b48b ce04e1e1-0343-4378-b34e-203f88ead2a8 GATGGGCCTCCGGTTCATGCC 0.572 50 46 ACACA 31 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 17 35600456 35600456 + Missense_Mutation SNP C C T TCGA-DH-5143-01A-01D-1468-08 TCGA-DH-5143-10A-01D-1468-08 Untested Somatic Phase_I WXS none Illumina GAIIx f4bbefd2-808c-4646-8bee-3ab3b040b48b ce04e1e1-0343-4378-b34e-203f88ead2a8 TTTCATCAATCGCTCTACCCA 0.423 98 301 VMP1 81671 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 17 57851219 57851219 + Missense_Mutation SNP G G T TCGA-DH-5143-01A-01D-1468-08 TCGA-DH-5143-10A-01D-1468-08 Untested Somatic Phase_I WXS none Illumina GAIIx f4bbefd2-808c-4646-8bee-3ab3b040b48b ce04e1e1-0343-4378-b34e-203f88ead2a8 AATTTGAAGAGATGCTGGAAC 0.438 14 107 SPIRE1 56907 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 18 12493109 12493109 + Missense_Mutation SNP C C T TCGA-DH-5143-01A-01D-1468-08 TCGA-DH-5143-10A-01D-1468-08 Untested Somatic Phase_I WXS none Illumina GAIIx f4bbefd2-808c-4646-8bee-3ab3b040b48b ce04e1e1-0343-4378-b34e-203f88ead2a8 TGATACAGGCCGCAGCTTTCT 0.458 13 102 CALR 811 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 19 13050007 13050007 + Missense_Mutation SNP C C G TCGA-DH-5143-01A-01D-1468-08 TCGA-DH-5143-10A-01D-1468-08 Untested Somatic Phase_I WXS none Illumina GAIIx f4bbefd2-808c-4646-8bee-3ab3b040b48b ce04e1e1-0343-4378-b34e-203f88ead2a8 CAAATTCGTTCTCAGTTCCGG 0.527 4 28 HNRNPL 3191 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 19 39334685 39334685 + Missense_Mutation SNP T T C TCGA-DH-5143-01A-01D-1468-08 TCGA-DH-5143-10A-01D-1468-08 Untested Somatic Phase_I WXS none Illumina GAIIx f4bbefd2-808c-4646-8bee-3ab3b040b48b ce04e1e1-0343-4378-b34e-203f88ead2a8 ACAGCCAGAATAGATATCAGC 0.517 22 231 SPAG17 200162 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 1 118523986 118523986 + Missense_Mutation SNP T T C TCGA-DH-5143-01A-01D-1468-08 TCGA-DH-5143-10A-01D-1468-08 Untested Somatic Phase_I WXS none Illumina GAIIx f4bbefd2-808c-4646-8bee-3ab3b040b48b ce04e1e1-0343-4378-b34e-203f88ead2a8 CTAGGCACACTTGAGGATTTC 0.343 32 203 C21orf2 0 hgsc.bcm.edu;ucsc.edu 37 21 45750795 45750795 + Missense_Mutation SNP C C T TCGA-DH-5143-01A-01D-1468-08 TCGA-DH-5143-10A-01D-1468-08 Untested Somatic Phase_I WXS none Illumina GAIIx f4bbefd2-808c-4646-8bee-3ab3b040b48b ce04e1e1-0343-4378-b34e-203f88ead2a8 TCATCCTGGGCGCCGCTGCTG 0.677 8 25 TRABD 80305 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 22 50636413 50636413 + Missense_Mutation SNP G G A TCGA-DH-5143-01A-01D-1468-08 TCGA-DH-5143-10A-01D-1468-08 Untested Somatic Phase_I WXS none Illumina GAIIx f4bbefd2-808c-4646-8bee-3ab3b040b48b ce04e1e1-0343-4378-b34e-203f88ead2a8 GAGCTGCCTCGGGCCTCTGAC 0.697 46 71 HOXD4 3233 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 2 177017514 177017514 + Missense_Mutation SNP C C A TCGA-DH-5143-01A-01D-1468-08 TCGA-DH-5143-10A-01D-1468-08 Untested Somatic Phase_I WXS none Illumina GAIIx f4bbefd2-808c-4646-8bee-3ab3b040b48b ce04e1e1-0343-4378-b34e-203f88ead2a8 GGTTCCAGAACCGGAGGATGA 0.502 19 161 ZDBF2 57683 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 2 207169636 207169636 + Silent SNP G G A rs143619911 by1000genomes TCGA-DH-5143-01A-01D-1468-08 TCGA-DH-5143-10A-01D-1468-08 Untested Somatic Phase_I WXS none Illumina GAIIx f4bbefd2-808c-4646-8bee-3ab3b040b48b ce04e1e1-0343-4378-b34e-203f88ead2a8 AGGAAGGCACGCAGGAGGTTT 0.453 13 67 IDH1 3417 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 2 209113112 209113112 + Missense_Mutation SNP C C T rs121913500 TCGA-DH-5143-01A-01D-1468-08 TCGA-DH-5143-10A-01D-1468-08 Untested Somatic Phase_I WXS none Illumina GAIIx f4bbefd2-808c-4646-8bee-3ab3b040b48b ce04e1e1-0343-4378-b34e-203f88ead2a8 ATAAGCATGACGACCTATGAT 0.393 46 103 EXOC2 55770 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 6 572531 572531 + Missense_Mutation SNP G G A TCGA-DH-5143-01A-01D-1468-08 TCGA-DH-5143-10A-01D-1468-08 Untested Somatic Phase_I WXS none Illumina GAIIx f4bbefd2-808c-4646-8bee-3ab3b040b48b ce04e1e1-0343-4378-b34e-203f88ead2a8 TCACTGAAGAGGCTTCCATTA 0.438 14 81 ZFAT 57623 hgsc.bcm.edu;broad.mit.edu 37 8 135614421 135614421 + Missense_Mutation SNP T T C TCGA-DH-5143-01A-01D-1468-08 TCGA-DH-5143-10A-01D-1468-08 Untested Somatic Phase_I WXS none Illumina GAIIx f4bbefd2-808c-4646-8bee-3ab3b040b48b ce04e1e1-0343-4378-b34e-203f88ead2a8 CTGTAGCTGGTCCCCCAGAGC 0.617 5 79 DIAPH2 1730 hgsc.bcm.edu;broad.mit.edu 37 X 96639008 96639008 + Missense_Mutation SNP A A T TCGA-DH-5143-01A-01D-1468-08 TCGA-DH-5143-10A-01D-1468-08 Untested Somatic Phase_I WXS none Illumina GAIIx f4bbefd2-808c-4646-8bee-3ab3b040b48b ce04e1e1-0343-4378-b34e-203f88ead2a8 TTAGAACGCCAGAAGAAAAAG 0.313 4 56 MID2 11043 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 X 107084365 107084365 + Missense_Mutation SNP G G A TCGA-DH-5143-01A-01D-1468-08 TCGA-DH-5143-10A-01D-1468-08 Untested Somatic Phase_I WXS none Illumina GAIIx f4bbefd2-808c-4646-8bee-3ab3b040b48b ce04e1e1-0343-4378-b34e-203f88ead2a8 TGCATCACCTGTGAGGTCTCC 0.562 26 31 BRF1 2972 broad.mit.edu;ucsc.edu 37 14 105752650 105752650 + Missense_Mutation SNP G G A TCGA-DH-5143-01A-01D-1468-08 TCGA-DH-5143-10A-01D-1468-08 Untested Somatic Phase_I WXS none Illumina GAIIx f4bbefd2-808c-4646-8bee-3ab3b040b48b ce04e1e1-0343-4378-b34e-203f88ead2a8 CAGGGTCTGCGCTCTCGACTC 0.587 3 36 TBX15 6913 broad.mit.edu;ucsc.edu 37 1 119428085 119428085 + Missense_Mutation SNP G G A TCGA-DH-5143-01A-01D-1468-08 TCGA-DH-5143-10A-01D-1468-08 Untested Somatic Phase_I WXS none Illumina GAIIx f4bbefd2-808c-4646-8bee-3ab3b040b48b ce04e1e1-0343-4378-b34e-203f88ead2a8 AGAAGAAGCCGAAGGGGATGG 0.478 4 31 F5 2153 broad.mit.edu;ucsc.edu 37 1 169529938 169529938 + Missense_Mutation SNP T T C TCGA-DH-5143-01A-01D-1468-08 TCGA-DH-5143-10A-01D-1468-08 Untested Somatic Phase_I WXS none Illumina GAIIx f4bbefd2-808c-4646-8bee-3ab3b040b48b ce04e1e1-0343-4378-b34e-203f88ead2a8 ATAGGTGTATTCTCGGCCTGG 0.517 42 297 EPHA4 2043 broad.mit.edu;ucsc.edu 37 2 222347239 222347239 + Missense_Mutation SNP A A G TCGA-DH-5143-01A-01D-1468-08 TCGA-DH-5143-10A-01D-1468-08 Untested Somatic Phase_I WXS none Illumina GAIIx f4bbefd2-808c-4646-8bee-3ab3b040b48b ce04e1e1-0343-4378-b34e-203f88ead2a8 GGTGTAGTGGACCCCACTTCC 0.512 97 586 RBM33 155435 broad.mit.edu;ucsc.edu 37 7 155530752 155530752 + Splice_Site SNP A A G TCGA-DH-5143-01A-01D-1468-08 TCGA-DH-5143-10A-01D-1468-08 Untested Somatic Phase_I WXS none Illumina GAIIx f4bbefd2-808c-4646-8bee-3ab3b040b48b ce04e1e1-0343-4378-b34e-203f88ead2a8 GTTACCTTTCAGTTTCAGGTG 0.468 38 137 RYR3 6263 broad.mit.edu;ucsc.edu 37 15 34130251 34130251 + Missense_Mutation SNP T T C TCGA-DH-5143-01A-01D-1468-08 TCGA-DH-5143-10A-01D-1468-08 Untested Somatic Phase_I WXS none Illumina GAIIx f4bbefd2-808c-4646-8bee-3ab3b040b48b ce04e1e1-0343-4378-b34e-203f88ead2a8 TGTGCTAAATTACTTCGAACC 0.468 73 208