Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_file Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID ref_context gc_content t_alt_count t_ref_count CUBN 8029 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 10 16877063 16877063 + Missense_Mutation SNP G G T TCGA-DU-5849-01A-11D-1705-08 TCGA-DU-5849-10A-01D-1705-08 Untested Somatic Phase_I WXS none Illumina GAIIx bcde1486-c728-4841-ab69-c8cb16706fc2 189c09ae-f5aa-4b68-89d8-65eb6bc57683 CCAAGTGAATGAAAAAAGAGG 0.428 16 71 HAL 3034 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 12 96389484 96389484 + Missense_Mutation SNP G G A TCGA-DU-5849-01A-11D-1705-08 TCGA-DU-5849-10A-01D-1705-08 Untested Somatic Phase_I WXS none Illumina GAIIx bcde1486-c728-4841-ab69-c8cb16706fc2 189c09ae-f5aa-4b68-89d8-65eb6bc57683 ACCTCGAGCCGGTCCTCGTTG 0.612 6 31 OR4N2 390429 hgsc.bcm.edu;ucsc.edu 37 14 20296023 20296023 + Missense_Mutation SNP G G A TCGA-DU-5849-01A-11D-1705-08 TCGA-DU-5849-10A-01D-1705-08 Untested Somatic Phase_I WXS none Illumina GAIIx bcde1486-c728-4841-ab69-c8cb16706fc2 189c09ae-f5aa-4b68-89d8-65eb6bc57683 ATGAACCCTAGAACCTGCTAT 0.532 30 152 TPM1 7168 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 15 63354774 63354774 + Splice_Site SNP G G A TCGA-DU-5849-01A-11D-1705-08 TCGA-DU-5849-10A-01D-1705-08 Untested Somatic Phase_I WXS none Illumina GAIIx bcde1486-c728-4841-ab69-c8cb16706fc2 189c09ae-f5aa-4b68-89d8-65eb6bc57683 AATCATTACAGGCTGAGACTC 0.358 17 65 IDH2 3418 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 15 90631838 90631838 + Missense_Mutation SNP C C T rs121913503 TCGA-DU-5849-01A-11D-1705-08 TCGA-DU-5849-10A-01D-1705-08 Untested Somatic Phase_I WXS none Illumina GAIIx bcde1486-c728-4841-ab69-c8cb16706fc2 189c09ae-f5aa-4b68-89d8-65eb6bc57683 ATGGGCGTGCCTGCCAATGGT 0.632 22 41 CACNG3 10368 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 16 24372780 24372780 + Missense_Mutation SNP G G A TCGA-DU-5849-01A-11D-1705-08 TCGA-DU-5849-10A-01D-1705-08 Untested Somatic Phase_I WXS none Illumina GAIIx bcde1486-c728-4841-ab69-c8cb16706fc2 189c09ae-f5aa-4b68-89d8-65eb6bc57683 CTTTTATTTCGGAGCCTTCTC 0.453 29 130 CNOT1 23019 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 16 58565875 58565875 + Missense_Mutation SNP G G A TCGA-DU-5849-01A-11D-1705-08 TCGA-DU-5849-10A-01D-1705-08 Untested Somatic Phase_I WXS none Illumina GAIIx bcde1486-c728-4841-ab69-c8cb16706fc2 189c09ae-f5aa-4b68-89d8-65eb6bc57683 CTGCTGTGGCGTATGTGCCAG 0.423 18 105 PER1 5187 hgsc.bcm.edu;broad.mit.edu 37 17 8054005 8054005 + Missense_Mutation SNP C C T TCGA-DU-5849-01A-11D-1705-08 TCGA-DU-5849-10A-01D-1705-08 Untested Somatic Phase_I WXS none Illumina GAIIx bcde1486-c728-4841-ab69-c8cb16706fc2 189c09ae-f5aa-4b68-89d8-65eb6bc57683 CCCATCAGCCCCTTCTAGGGG 0.677 6 24 HDHD2 84064 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 18 44656634 44656634 + Missense_Mutation SNP T T G TCGA-DU-5849-01A-11D-1705-08 TCGA-DU-5849-10A-01D-1705-08 Untested Somatic Phase_I WXS none Illumina GAIIx bcde1486-c728-4841-ab69-c8cb16706fc2 189c09ae-f5aa-4b68-89d8-65eb6bc57683 TGATTCAGAATTTGATAATGA 0.353 7 88 OR10H5 284433 hgsc.bcm.edu;broad.mit.edu 37 19 15905003 15905003 + Missense_Mutation SNP G G C TCGA-DU-5849-01A-11D-1705-08 TCGA-DU-5849-10A-01D-1705-08 Untested Somatic Phase_I WXS none Illumina GAIIx bcde1486-c728-4841-ab69-c8cb16706fc2 189c09ae-f5aa-4b68-89d8-65eb6bc57683 CATGGCCACTGTCTGGAGCGA 0.597 6 82 IL12RB1 3594 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 19 18191676 18191676 + Silent SNP C C T TCGA-DU-5849-01A-11D-1705-08 TCGA-DU-5849-10A-01D-1705-08 Untested Somatic Phase_I WXS none Illumina GAIIx bcde1486-c728-4841-ab69-c8cb16706fc2 189c09ae-f5aa-4b68-89d8-65eb6bc57683 CCTCAGGAGACTTCTCTGTCT 0.587 19 50 GNAS 2778 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 20 57415453 57415453 + Missense_Mutation SNP C C A TCGA-DU-5849-01A-11D-1705-08 TCGA-DU-5849-10A-01D-1705-08 Untested Somatic Phase_I WXS none Illumina GAIIx bcde1486-c728-4841-ab69-c8cb16706fc2 189c09ae-f5aa-4b68-89d8-65eb6bc57683 GCTGTCCCTCCCCGAGTGCCT 0.617 24 52 DONSON 29980 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 21 34958408 34958408 + Missense_Mutation SNP G G A TCGA-DU-5849-01A-11D-1705-08 TCGA-DU-5849-10A-01D-1705-08 Untested Somatic Phase_I WXS none Illumina GAIIx bcde1486-c728-4841-ab69-c8cb16706fc2 189c09ae-f5aa-4b68-89d8-65eb6bc57683 AAGGAGTCGCGTTTTAATACT 0.433 8 63 DNAJB7 150353 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 22 41257198 41257198 + Silent SNP C C T TCGA-DU-5849-01A-11D-1705-08 TCGA-DU-5849-10A-01D-1705-08 Untested Somatic Phase_I WXS none Illumina GAIIx bcde1486-c728-4841-ab69-c8cb16706fc2 189c09ae-f5aa-4b68-89d8-65eb6bc57683 ATATACCTCCCTCATCATTGT 0.423 13 88 VRK2 7444 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 2 58311264 58311264 + Silent SNP A A G TCGA-DU-5849-01A-11D-1705-08 TCGA-DU-5849-10A-01D-1705-08 Untested Somatic Phase_I WXS none Illumina GAIIx bcde1486-c728-4841-ab69-c8cb16706fc2 189c09ae-f5aa-4b68-89d8-65eb6bc57683 CAAGACATGTAGTAAAAGTGG 0.308 14 40 GLI2 2736 hgsc.bcm.edu;broad.mit.edu 37 2 121684944 121684944 + Silent SNP G G A TCGA-DU-5849-01A-11D-1705-08 TCGA-DU-5849-10A-01D-1705-08 Untested Somatic Phase_I WXS none Illumina GAIIx bcde1486-c728-4841-ab69-c8cb16706fc2 189c09ae-f5aa-4b68-89d8-65eb6bc57683 CAGTGCCGCAGCATCTCTTGC 0.502 10 174 PBRM1 55193 hgsc.bcm.edu;broad.mit.edu 37 3 52643532 52643532 + Silent SNP T T A TCGA-DU-5849-01A-11D-1705-08 TCGA-DU-5849-10A-01D-1705-08 Untested Somatic Phase_I WXS none Illumina GAIIx bcde1486-c728-4841-ab69-c8cb16706fc2 189c09ae-f5aa-4b68-89d8-65eb6bc57683 GACTCATGACTGACACAAAAA 0.453 5 74 ZBTB20 26137 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 3 114070194 114070194 + Missense_Mutation SNP T T C TCGA-DU-5849-01A-11D-1705-08 TCGA-DU-5849-10A-01D-1705-08 Untested Somatic Phase_I WXS none Illumina GAIIx bcde1486-c728-4841-ab69-c8cb16706fc2 189c09ae-f5aa-4b68-89d8-65eb6bc57683 GAGTGCCGAGTAGATCCTGTC 0.667 11 70 SERPINI1 5274 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 3 167508323 167508323 + Silent SNP T T C TCGA-DU-5849-01A-11D-1705-08 TCGA-DU-5849-10A-01D-1705-08 Untested Somatic Phase_I WXS none Illumina GAIIx bcde1486-c728-4841-ab69-c8cb16706fc2 189c09ae-f5aa-4b68-89d8-65eb6bc57683 CAGTAAATCATGTGGACTTCA 0.363 22 36 LPHN3 23284 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 4 62453140 62453140 + Missense_Mutation SNP A A G TCGA-DU-5849-01A-11D-1705-08 TCGA-DU-5849-10A-01D-1705-08 Untested Somatic Phase_I WXS none Illumina GAIIx bcde1486-c728-4841-ab69-c8cb16706fc2 189c09ae-f5aa-4b68-89d8-65eb6bc57683 CCAGATGCCTATAAGATTATG 0.363 7 19 ART3 419 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 4 77018807 77018807 + Silent SNP C C T TCGA-DU-5849-01A-11D-1705-08 TCGA-DU-5849-10A-01D-1705-08 Untested Somatic Phase_I WXS none Illumina GAIIx bcde1486-c728-4841-ab69-c8cb16706fc2 189c09ae-f5aa-4b68-89d8-65eb6bc57683 GACTAAAAACCGAAAACTGTA 0.328 21 69 IMPG1 3617 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 6 76657112 76657112 + Missense_Mutation SNP C C T TCGA-DU-5849-01A-11D-1705-08 TCGA-DU-5849-10A-01D-1705-08 Untested Somatic Phase_I WXS none Illumina GAIIx bcde1486-c728-4841-ab69-c8cb16706fc2 189c09ae-f5aa-4b68-89d8-65eb6bc57683 TCCAAGACCCCGTGCACAGCC 0.448 13 49 GIMAP5 55340 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 7 150439615 150439615 + Missense_Mutation SNP G G A TCGA-DU-5849-01A-11D-1705-08 TCGA-DU-5849-10A-01D-1705-08 Untested Somatic Phase_I WXS none Illumina GAIIx bcde1486-c728-4841-ab69-c8cb16706fc2 189c09ae-f5aa-4b68-89d8-65eb6bc57683 GGACACAGTGGCCATCAGGAA 0.592 63 71 EPPK1 83481 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 8 144945366 144945366 + Missense_Mutation SNP G G A TCGA-DU-5849-01A-11D-1705-08 TCGA-DU-5849-10A-01D-1705-08 Untested Somatic Phase_I WXS none Illumina GAIIx bcde1486-c728-4841-ab69-c8cb16706fc2 189c09ae-f5aa-4b68-89d8-65eb6bc57683 GTGACAGCGCGCTCAGCCGAC 0.617 9 42 SPATA31D1 389763 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 9 84606296 84606296 + Nonsense_Mutation SNP T T A TCGA-DU-5849-01A-11D-1705-08 TCGA-DU-5849-10A-01D-1705-08 Untested Somatic Phase_I WXS none Illumina GAIIx bcde1486-c728-4841-ab69-c8cb16706fc2 189c09ae-f5aa-4b68-89d8-65eb6bc57683 CCATCTGCTTTACCACCGGAA 0.468 58 232 SMC2 10592 hgsc.bcm.edu;broad.mit.edu 37 9 106860785 106860785 + Missense_Mutation SNP G G C TCGA-DU-5849-01A-11D-1705-08 TCGA-DU-5849-10A-01D-1705-08 Untested Somatic Phase_I WXS none Illumina GAIIx bcde1486-c728-4841-ab69-c8cb16706fc2 189c09ae-f5aa-4b68-89d8-65eb6bc57683 AACAACACCAGAGTACAGGAT 0.338 7 122 NXF3 56000 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 X 102338548 102338548 + Missense_Mutation SNP C C T TCGA-DU-5849-01A-11D-1705-08 TCGA-DU-5849-10A-01D-1705-08 Untested Somatic Phase_I WXS none Illumina GAIIx bcde1486-c728-4841-ab69-c8cb16706fc2 189c09ae-f5aa-4b68-89d8-65eb6bc57683 TCAACTGGGACGAAGGGTACA 0.458 40 61 RALGAPA2 57186 broad.mit.edu;ucsc.edu 37 20 20616214 20616214 + Missense_Mutation SNP C C T TCGA-DU-5849-01A-11D-1705-08 TCGA-DU-5849-10A-01D-1705-08 Untested Somatic Phase_I WXS none Illumina GAIIx bcde1486-c728-4841-ab69-c8cb16706fc2 189c09ae-f5aa-4b68-89d8-65eb6bc57683 TTCTCATTGTCTCGAGTGGTA 0.343 21 147 KRTAP10-12 386685 broad.mit.edu;ucsc.edu 37 21 46117735 46117735 + Missense_Mutation SNP C C T TCGA-DU-5849-01A-11D-1705-08 TCGA-DU-5849-10A-01D-1705-08 Untested Somatic Phase_I WXS none Illumina GAIIx bcde1486-c728-4841-ab69-c8cb16706fc2 189c09ae-f5aa-4b68-89d8-65eb6bc57683 CAGACCCGCCCGCCGCGTGCC 0.716 22 63 PRKDC 5591 broad.mit.edu;ucsc.edu 37 8 48744441 48744441 + Missense_Mutation SNP C C A TCGA-DU-5849-01A-11D-1705-08 TCGA-DU-5849-10A-01D-1705-08 Untested Somatic Phase_I WXS none Illumina GAIIx bcde1486-c728-4841-ab69-c8cb16706fc2 189c09ae-f5aa-4b68-89d8-65eb6bc57683 CCTGGTCCCTCATAAACCGTC 0.542 28 167 TRPV2 51393 broad.mit.edu;ucsc.edu 37 17 16336965 16336965 + Silent SNP C C T TCGA-DU-5849-01A-11D-1705-08 TCGA-DU-5849-10A-01D-1705-08 Untested Somatic Phase_I WXS none Illumina GAIIx bcde1486-c728-4841-ab69-c8cb16706fc2 189c09ae-f5aa-4b68-89d8-65eb6bc57683 TGATGCTGACCGTTGGCACTA 0.587 17 73 TICAM1 148022 broad.mit.edu;ucsc.edu 37 19 4817206 4817206 + Missense_Mutation SNP T T C TCGA-DU-5849-01A-11D-1705-08 TCGA-DU-5849-10A-01D-1705-08 Untested Somatic Phase_I WXS none Illumina GAIIx bcde1486-c728-4841-ab69-c8cb16706fc2 189c09ae-f5aa-4b68-89d8-65eb6bc57683 CACAAAGTTATAGAATTTCTG 0.592 22 25 COPA 1314 broad.mit.edu;ucsc.edu 37 1 160268752 160268752 + Silent SNP T T C TCGA-DU-5849-01A-11D-1705-08 TCGA-DU-5849-10A-01D-1705-08 Untested Somatic Phase_I WXS none Illumina GAIIx bcde1486-c728-4841-ab69-c8cb16706fc2 189c09ae-f5aa-4b68-89d8-65eb6bc57683 ACTGGCCAACTAGTTTGGCAT 0.443 17 65 DDA1 79016 broad.mit.edu;ucsc.edu 37 19 17425150 17425150 + Nonsense_Mutation SNP C C T TCGA-DU-5849-01A-11D-1705-08 TCGA-DU-5849-10A-01D-1705-08 Untested Somatic Phase_I WXS none Illumina GAIIx bcde1486-c728-4841-ab69-c8cb16706fc2 189c09ae-f5aa-4b68-89d8-65eb6bc57683 CCTGCAGAACCGACGGCCCTC 0.607 5 38 NOTCH1 4851 ucsc.edu 37 9 139400002 139400002 + Missense_Mutation SNP C C T TCGA-DU-5849-01A-11D-1705-08 TCGA-DU-5849-10A-01D-1705-08 Untested Somatic Phase_I WXS none Illumina GAIIx bcde1486-c728-4841-ab69-c8cb16706fc2 189c09ae-f5aa-4b68-89d8-65eb6bc57683 GGGCAGCTCGCACGCCTCCTC 0.682 2 24