Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_file Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID ref_context gc_content t_alt_count t_ref_count YME1L1 10730 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 10 27411836 27411836 + Missense_Mutation SNP C C A TCGA-DU-5852-01A-11D-1705-08 TCGA-DU-5852-10A-01D-1705-08 Untested Somatic Phase_I WXS none Illumina GAIIx 7c81bf20-05e8-4fae-8585-c192e8084231 f1c56802-8ab9-48c7-856a-af4aac8aebe7 AGATTCAATTCTCTTCCCACC 0.348 32 23 RET 5979 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 10 43595972 43595972 + Missense_Mutation SNP G G A TCGA-DU-5852-01A-11D-1705-08 TCGA-DU-5852-10A-01D-1705-08 Untested Somatic Phase_I WXS none Illumina GAIIx 7c81bf20-05e8-4fae-8585-c192e8084231 f1c56802-8ab9-48c7-856a-af4aac8aebe7 CCAGGCAGCCGGCACGCCCTT 0.627 26 7 COL17A1 1308 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 10 105803313 105803313 + Missense_Mutation SNP C C T TCGA-DU-5852-01A-11D-1705-08 TCGA-DU-5852-10A-01D-1705-08 Untested Somatic Phase_I WXS none Illumina GAIIx 7c81bf20-05e8-4fae-8585-c192e8084231 f1c56802-8ab9-48c7-856a-af4aac8aebe7 CCTGGGGGGCCTGGGACAGTG 0.572 20 7 SLC22A10 387775 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 11 63064782 63064782 + Nonsense_Mutation SNP C C T rs111381363 TCGA-DU-5852-01A-11D-1705-08 TCGA-DU-5852-10A-01D-1705-08 Untested Somatic Phase_I WXS none Illumina GAIIx 7c81bf20-05e8-4fae-8585-c192e8084231 f1c56802-8ab9-48c7-856a-af4aac8aebe7 CAGGTTTGGGCGAAGATTTAT 0.398 42 68 DPP3 10072 hgsc.bcm.edu;ucsc.edu 37 11 66276620 66276620 + Silent SNP C C T TCGA-DU-5852-01A-11D-1705-08 TCGA-DU-5852-10A-01D-1705-08 Untested Somatic Phase_I WXS none Illumina GAIIx 7c81bf20-05e8-4fae-8585-c192e8084231 f1c56802-8ab9-48c7-856a-af4aac8aebe7 CTGAGCGTTTCCCAGAGGATG 0.602 20 37 GAB2 9846 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 11 77931439 77931439 + Missense_Mutation SNP G G A TCGA-DU-5852-01A-11D-1705-08 TCGA-DU-5852-10A-01D-1705-08 Untested Somatic Phase_I WXS none Illumina GAIIx 7c81bf20-05e8-4fae-8585-c192e8084231 f1c56802-8ab9-48c7-856a-af4aac8aebe7 CTCTTCTTAGGGGCAGGACTG 0.577 30 39 HTR3A 3359 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 11 113860240 113860240 + Missense_Mutation SNP C C T TCGA-DU-5852-01A-11D-1705-08 TCGA-DU-5852-10A-01D-1705-08 Untested Somatic Phase_I WXS none Illumina GAIIx 7c81bf20-05e8-4fae-8585-c192e8084231 f1c56802-8ab9-48c7-856a-af4aac8aebe7 CGAGAAGAGCCCGAGGGACAG 0.637 38 62 OR6M1 390261 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 11 123676254 123676254 + Missense_Mutation SNP G G C TCGA-DU-5852-01A-11D-1705-08 TCGA-DU-5852-10A-01D-1705-08 Untested Somatic Phase_I WXS none Illumina GAIIx 7c81bf20-05e8-4fae-8585-c192e8084231 f1c56802-8ab9-48c7-856a-af4aac8aebe7 CGGCCACCTTGTCATAATCCA 0.488 29 54 GDF3 9573 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 12 7843233 7843233 + Silent SNP G G A TCGA-DU-5852-01A-11D-1705-08 TCGA-DU-5852-10A-01D-1705-08 Untested Somatic Phase_I WXS none Illumina GAIIx 7c81bf20-05e8-4fae-8585-c192e8084231 f1c56802-8ab9-48c7-856a-af4aac8aebe7 TGGCAGACAGGTTAAAGTAGA 0.478 20 52 DPPA3 359787 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 12 7867929 7867929 + Nonsense_Mutation SNP G G A TCGA-DU-5852-01A-11D-1705-08 TCGA-DU-5852-10A-01D-1705-08 Untested Somatic Phase_I WXS none Illumina GAIIx 7c81bf20-05e8-4fae-8585-c192e8084231 f1c56802-8ab9-48c7-856a-af4aac8aebe7 GAAGATGAGTGGCTTTACAGC 0.478 13 25 STAT6 6778 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 12 57501513 57501513 + Missense_Mutation SNP C C T TCGA-DU-5852-01A-11D-1705-08 TCGA-DU-5852-10A-01D-1705-08 Untested Somatic Phase_I WXS none Illumina GAIIx 7c81bf20-05e8-4fae-8585-c192e8084231 f1c56802-8ab9-48c7-856a-af4aac8aebe7 GCGTCGGAGCCGACCAGGAAC 0.602 11 37 UBL7 84993 hgsc.bcm.edu;broad.mit.edu 37 15 74751068 74751068 + Silent SNP A A G TCGA-DU-5852-01A-11D-1705-08 TCGA-DU-5852-10A-01D-1705-08 Untested Somatic Phase_I WXS none Illumina GAIIx 7c81bf20-05e8-4fae-8585-c192e8084231 f1c56802-8ab9-48c7-856a-af4aac8aebe7 GTTTGCCAGCAATAAGCTGCT 0.502 8 132 KIAA1199 57214 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 15 81181824 81181824 + Missense_Mutation SNP C C T TCGA-DU-5852-01A-11D-1705-08 TCGA-DU-5852-10A-01D-1705-08 Untested Somatic Phase_I WXS none Illumina GAIIx 7c81bf20-05e8-4fae-8585-c192e8084231 f1c56802-8ab9-48c7-856a-af4aac8aebe7 GTGGAGTGGACGGAGTGGTTC 0.483 26 56 SLCO3A1 28232 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 15 92706193 92706193 + Missense_Mutation SNP G G A TCGA-DU-5852-01A-11D-1705-08 TCGA-DU-5852-10A-01D-1705-08 Untested Somatic Phase_I WXS none Illumina GAIIx 7c81bf20-05e8-4fae-8585-c192e8084231 f1c56802-8ab9-48c7-856a-af4aac8aebe7 AACTATAAACGCTACATCAAA 0.547 28 36 SLC12A3 6559 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 16 56928468 56928468 + Silent SNP C C T TCGA-DU-5852-01A-11D-1705-08 TCGA-DU-5852-10A-01D-1705-08 Untested Somatic Phase_I WXS none Illumina GAIIx 7c81bf20-05e8-4fae-8585-c192e8084231 f1c56802-8ab9-48c7-856a-af4aac8aebe7 TTCCCTATCTCCTTGGCCGCA 0.557 9 9 NUDT7 283927 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 16 77775636 77775636 + Missense_Mutation SNP G G A rs35294368 TCGA-DU-5852-01A-11D-1705-08 TCGA-DU-5852-10A-01D-1705-08 Untested Somatic Phase_I WXS none Illumina GAIIx 7c81bf20-05e8-4fae-8585-c192e8084231 f1c56802-8ab9-48c7-856a-af4aac8aebe7 CTTGGTCACCGTTTTATTAAT 0.473 24 43 CDH13 1012 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 16 83250986 83250986 + Missense_Mutation SNP C C T TCGA-DU-5852-01A-11D-1705-08 TCGA-DU-5852-10A-01D-1705-08 Untested Somatic Phase_I WXS none Illumina GAIIx 7c81bf20-05e8-4fae-8585-c192e8084231 f1c56802-8ab9-48c7-856a-af4aac8aebe7 GTCCAAGTTCCGGCTCACTGG 0.463 23 40 OVCA2 124641 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 17 1946242 1946242 + Silent SNP G G A TCGA-DU-5852-01A-11D-1705-08 TCGA-DU-5852-10A-01D-1705-08 Untested Somatic Phase_I WXS none Illumina GAIIx 7c81bf20-05e8-4fae-8585-c192e8084231 f1c56802-8ab9-48c7-856a-af4aac8aebe7 ATGTTTTTGGGGACACTGACA 0.547 30 53 RANGRF 29098 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 17 8192897 8192897 + Missense_Mutation SNP A A G TCGA-DU-5852-01A-11D-1705-08 TCGA-DU-5852-10A-01D-1705-08 Untested Somatic Phase_I WXS none Illumina GAIIx 7c81bf20-05e8-4fae-8585-c192e8084231 f1c56802-8ab9-48c7-856a-af4aac8aebe7 CTTACCTTCAATCAGCCCCCG 0.567 19 42 SREBF1 6720 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 17 17721591 17721591 + Missense_Mutation SNP G G A TCGA-DU-5852-01A-11D-1705-08 TCGA-DU-5852-10A-01D-1705-08 Untested Somatic Phase_I WXS none Illumina GAIIx 7c81bf20-05e8-4fae-8585-c192e8084231 f1c56802-8ab9-48c7-856a-af4aac8aebe7 GTGGACAGCAGTGCGCAGACT 0.547 17 67 FAM83G 644815 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 17 18881610 18881610 + Missense_Mutation SNP C C T TCGA-DU-5852-01A-11D-1705-08 TCGA-DU-5852-10A-01D-1705-08 Untested Somatic Phase_I WXS none Illumina GAIIx 7c81bf20-05e8-4fae-8585-c192e8084231 f1c56802-8ab9-48c7-856a-af4aac8aebe7 TGGTGCTGGGCGCTGGCCTGG 0.642 7 10 LAMA3 3909 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 18 21402283 21402283 + Missense_Mutation SNP A A T TCGA-DU-5852-01A-11D-1705-08 TCGA-DU-5852-10A-01D-1705-08 Untested Somatic Phase_I WXS none Illumina GAIIx 7c81bf20-05e8-4fae-8585-c192e8084231 f1c56802-8ab9-48c7-856a-af4aac8aebe7 ATTCTGAGATACGTTAACCCT 0.383 24 67 LAMA3 3909 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 18 21402284 21402284 + Silent SNP C C T TCGA-DU-5852-01A-11D-1705-08 TCGA-DU-5852-10A-01D-1705-08 Untested Somatic Phase_I WXS none Illumina GAIIx 7c81bf20-05e8-4fae-8585-c192e8084231 f1c56802-8ab9-48c7-856a-af4aac8aebe7 TTCTGAGATACGTTAACCCTG 0.383 25 67 EPG5 57724 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 18 43496145 43496145 + Silent SNP G G A TCGA-DU-5852-01A-11D-1705-08 TCGA-DU-5852-10A-01D-1705-08 Untested Somatic Phase_I WXS none Illumina GAIIx 7c81bf20-05e8-4fae-8585-c192e8084231 f1c56802-8ab9-48c7-856a-af4aac8aebe7 CCACTTCATTGGGCTGAGTGC 0.473 9 34 LRRC4B 94030 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 19 51020955 51020955 + Missense_Mutation SNP G G A TCGA-DU-5852-01A-11D-1705-08 TCGA-DU-5852-10A-01D-1705-08 Untested Somatic Phase_I WXS none Illumina GAIIx 7c81bf20-05e8-4fae-8585-c192e8084231 f1c56802-8ab9-48c7-856a-af4aac8aebe7 GCTGTAGTGCGCCTTGAAGGC 0.692 7 13 KLK1 3816 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 19 51323240 51323240 + Missense_Mutation SNP T T G TCGA-DU-5852-01A-11D-1705-08 TCGA-DU-5852-10A-01D-1705-08 Untested Somatic Phase_I WXS none Illumina GAIIx 7c81bf20-05e8-4fae-8585-c192e8084231 f1c56802-8ab9-48c7-856a-af4aac8aebe7 TTTGCACTCATCATTAGGCAG 0.547 12 30 KLK15 55554 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 19 51330300 51330300 + Silent SNP G G A TCGA-DU-5852-01A-11D-1705-08 TCGA-DU-5852-10A-01D-1705-08 Untested Somatic Phase_I WXS none Illumina GAIIx 7c81bf20-05e8-4fae-8585-c192e8084231 f1c56802-8ab9-48c7-856a-af4aac8aebe7 ACATGATGTCGTTGCGGTGGC 0.687 38 52 LILRA2 11027 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 19 55086781 55086781 + Silent SNP G G A rs144206436 TCGA-DU-5852-01A-11D-1705-08 TCGA-DU-5852-10A-01D-1705-08 Untested Somatic Phase_I WXS none Illumina GAIIx 7c81bf20-05e8-4fae-8585-c192e8084231 f1c56802-8ab9-48c7-856a-af4aac8aebe7 CCCCCGGGGAGAGCCTGACCC 0.577 37 62 PTPRH 5794 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 19 55713502 55713502 + Missense_Mutation SNP C C T rs147691392 byFrequency TCGA-DU-5852-01A-11D-1705-08 TCGA-DU-5852-10A-01D-1705-08 Untested Somatic Phase_I WXS none Illumina GAIIx 7c81bf20-05e8-4fae-8585-c192e8084231 f1c56802-8ab9-48c7-856a-af4aac8aebe7 TACAAACACCCGGGTTCAAGT 0.542 45 67 SRSF11 9295 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 1 70687521 70687521 + Splice_Site SNP G G A TCGA-DU-5852-01A-11D-1705-08 TCGA-DU-5852-10A-01D-1705-08 Untested Somatic Phase_I WXS none Illumina GAIIx 7c81bf20-05e8-4fae-8585-c192e8084231 f1c56802-8ab9-48c7-856a-af4aac8aebe7 CTTCCCGCCGGAGTGAGTATC 0.587 11 47 ABCA4 24 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 1 94486867 94486867 + Silent SNP G G A rs61750159 TCGA-DU-5852-01A-11D-1705-08 TCGA-DU-5852-10A-01D-1705-08 Untested Somatic Phase_I WXS none Illumina GAIIx 7c81bf20-05e8-4fae-8585-c192e8084231 f1c56802-8ab9-48c7-856a-af4aac8aebe7 CATACTCCTCGGGGCTCCTGT 0.557 47 95 F5 2153 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 1 169512193 169512193 + Missense_Mutation SNP C C T TCGA-DU-5852-01A-11D-1705-08 TCGA-DU-5852-10A-01D-1705-08 Untested Somatic Phase_I WXS none Illumina GAIIx 7c81bf20-05e8-4fae-8585-c192e8084231 f1c56802-8ab9-48c7-856a-af4aac8aebe7 AGGTTCTAAACGATCATGCAT 0.403 86 171 SLC35F3 148641 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 1 234041367 234041367 + Missense_Mutation SNP C C T rs146928346 TCGA-DU-5852-01A-11D-1705-08 TCGA-DU-5852-10A-01D-1705-08 Untested Somatic Phase_I WXS none Illumina GAIIx 7c81bf20-05e8-4fae-8585-c192e8084231 f1c56802-8ab9-48c7-856a-af4aac8aebe7 GTGGACGAGGCGATTAAGGAG 0.647 21 45 OR14C36 127066 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 1 248512354 248512354 + Missense_Mutation SNP C C T rs145207343 TCGA-DU-5852-01A-11D-1705-08 TCGA-DU-5852-10A-01D-1705-08 Untested Somatic Phase_I WXS none Illumina GAIIx 7c81bf20-05e8-4fae-8585-c192e8084231 f1c56802-8ab9-48c7-856a-af4aac8aebe7 ATTTCTAAGGCGGGATGTGTA 0.473 22 31 PROKR2 128674 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 20 5283062 5283062 + Missense_Mutation SNP G G A TCGA-DU-5852-01A-11D-1705-08 TCGA-DU-5852-10A-01D-1705-08 Untested Somatic Phase_I WXS none Illumina GAIIx 7c81bf20-05e8-4fae-8585-c192e8084231 f1c56802-8ab9-48c7-856a-af4aac8aebe7 AATCTGCTCCGTCTGGAACCC 0.607 6 24 ITCH 83737 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 20 33068913 33068913 + Silent SNP C C T TCGA-DU-5852-01A-11D-1705-08 TCGA-DU-5852-10A-01D-1705-08 Untested Somatic Phase_I WXS none Illumina GAIIx 7c81bf20-05e8-4fae-8585-c192e8084231 f1c56802-8ab9-48c7-856a-af4aac8aebe7 TGTACTTCTCCGTTGACAAAG 0.313 33 71 NDUFAF7 55471 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 2 37468832 37468832 + Missense_Mutation SNP G G T TCGA-DU-5852-01A-11D-1705-08 TCGA-DU-5852-10A-01D-1705-08 Untested Somatic Phase_I WXS none Illumina GAIIx 7c81bf20-05e8-4fae-8585-c192e8084231 f1c56802-8ab9-48c7-856a-af4aac8aebe7 TAAAGAGAAGGTCCCGTTAGA 0.423 16 27 USP34 9736 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 2 61468710 61468710 + Silent SNP C C T TCGA-DU-5852-01A-11D-1705-08 TCGA-DU-5852-10A-01D-1705-08 Untested Somatic Phase_I WXS none Illumina GAIIx 7c81bf20-05e8-4fae-8585-c192e8084231 f1c56802-8ab9-48c7-856a-af4aac8aebe7 GTAACTCTGACGAAACATCAA 0.328 14 29 PAX8 7849 hgsc.bcm.edu;broad.mit.edu 37 2 114002201 114002201 + Splice_Site SNP C C A TCGA-DU-5852-01A-11D-1705-08 TCGA-DU-5852-10A-01D-1705-08 Untested Somatic Phase_I WXS none Illumina GAIIx 7c81bf20-05e8-4fae-8585-c192e8084231 f1c56802-8ab9-48c7-856a-af4aac8aebe7 TCTCGTAGTACCTACTCCAAT 0.552 32 124 HRH1 3269 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 3 11301013 11301013 + Missense_Mutation SNP G G A rs139664451 byFrequency TCGA-DU-5852-01A-11D-1705-08 TCGA-DU-5852-10A-01D-1705-08 Untested Somatic Phase_I WXS none Illumina GAIIx 7c81bf20-05e8-4fae-8585-c192e8084231 f1c56802-8ab9-48c7-856a-af4aac8aebe7 TCACTGGGCCGTCCTCTCTGC 0.552 94 113 PBRM1 55193 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 3 52651430 52651430 + Missense_Mutation SNP G G A TCGA-DU-5852-01A-11D-1705-08 TCGA-DU-5852-10A-01D-1705-08 Untested Somatic Phase_I WXS none Illumina GAIIx 7c81bf20-05e8-4fae-8585-c192e8084231 f1c56802-8ab9-48c7-856a-af4aac8aebe7 TAATAATCAGGATAGTCCTTT 0.363 23 38 BRD2 6046 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 6 32947789 32947789 + Missense_Mutation SNP T T A TCGA-DU-5852-01A-11D-1705-08 TCGA-DU-5852-10A-01D-1705-08 Untested Somatic Phase_I WXS none Illumina GAIIx 7c81bf20-05e8-4fae-8585-c192e8084231 f1c56802-8ab9-48c7-856a-af4aac8aebe7 GGAGCCCTCTTTACGTGATTC 0.483 14 35 PACSIN1 29993 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 6 34498365 34498365 + Splice_Site SNP G G A TCGA-DU-5852-01A-11D-1705-08 TCGA-DU-5852-10A-01D-1705-08 Untested Somatic Phase_I WXS none Illumina GAIIx 7c81bf20-05e8-4fae-8585-c192e8084231 f1c56802-8ab9-48c7-856a-af4aac8aebe7 ACCGCGGCAGGTGAGTGCCTC 0.582 9 11 FILIP1 27145 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 6 76024624 76024624 + Silent SNP C C T TCGA-DU-5852-01A-11D-1705-08 TCGA-DU-5852-10A-01D-1705-08 Untested Somatic Phase_I WXS none Illumina GAIIx 7c81bf20-05e8-4fae-8585-c192e8084231 f1c56802-8ab9-48c7-856a-af4aac8aebe7 GAGAAAACCTCGAAGCCTTGT 0.418 60 88 HACE1 57531 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 6 105232863 105232863 + Missense_Mutation SNP G G A TCGA-DU-5852-01A-11D-1705-08 TCGA-DU-5852-10A-01D-1705-08 Untested Somatic Phase_I WXS none Illumina GAIIx 7c81bf20-05e8-4fae-8585-c192e8084231 f1c56802-8ab9-48c7-856a-af4aac8aebe7 TTCTTACCCCGGAGGCATCTG 0.348 23 46 EGFR 1956 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 7 55221710 55221710 + Missense_Mutation SNP C C T TCGA-DU-5852-01A-11D-1705-08 TCGA-DU-5852-10A-01D-1705-08 Untested Somatic Phase_I WXS none Illumina GAIIx 7c81bf20-05e8-4fae-8585-c192e8084231 f1c56802-8ab9-48c7-856a-af4aac8aebe7 ATAGGTCTGCCGCAAATTCCG 0.582 46 156 AUTS2 26053 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 7 70231260 70231260 + Missense_Mutation SNP C C A TCGA-DU-5852-01A-11D-1705-08 TCGA-DU-5852-10A-01D-1705-08 Untested Somatic Phase_I WXS none Illumina GAIIx 7c81bf20-05e8-4fae-8585-c192e8084231 f1c56802-8ab9-48c7-856a-af4aac8aebe7 agcacacCTTCACGCCGTTCC 0.657 16 18 STAG3 10734 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 7 99795727 99795727 + Missense_Mutation SNP G G A TCGA-DU-5852-01A-11D-1705-08 TCGA-DU-5852-10A-01D-1705-08 Untested Somatic Phase_I WXS none Illumina GAIIx 7c81bf20-05e8-4fae-8585-c192e8084231 f1c56802-8ab9-48c7-856a-af4aac8aebe7 TGGTTTCCATGGTCATGGACA 0.463 29 64 CUL1 8454 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 7 148451085 148451085 + Missense_Mutation SNP G G A TCGA-DU-5852-01A-11D-1705-08 TCGA-DU-5852-10A-01D-1705-08 Untested Somatic Phase_I WXS none Illumina GAIIx 7c81bf20-05e8-4fae-8585-c192e8084231 f1c56802-8ab9-48c7-856a-af4aac8aebe7 TATAACTACTGTACTAGTGTT 0.403 15 24 LETM2 137994 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 8 38250441 38250441 + Silent SNP C C T TCGA-DU-5852-01A-11D-1705-08 TCGA-DU-5852-10A-01D-1705-08 Untested Somatic Phase_I WXS none Illumina GAIIx 7c81bf20-05e8-4fae-8585-c192e8084231 f1c56802-8ab9-48c7-856a-af4aac8aebe7 TTTGGATTGACGCCAAAGTTG 0.393 22 48 DCAF4L2 138009 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 8 88885200 88885200 + Missense_Mutation SNP G G C TCGA-DU-5852-01A-11D-1705-08 TCGA-DU-5852-10A-01D-1705-08 Untested Somatic Phase_I WXS none Illumina GAIIx 7c81bf20-05e8-4fae-8585-c192e8084231 f1c56802-8ab9-48c7-856a-af4aac8aebe7 TAGCAGTCCTGGCCCACGGCC 0.572 19 38 SLC45A4 57210 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 8 142228890 142228890 + Silent SNP G G A TCGA-DU-5852-01A-11D-1705-08 TCGA-DU-5852-10A-01D-1705-08 Untested Somatic Phase_I WXS none Illumina GAIIx 7c81bf20-05e8-4fae-8585-c192e8084231 f1c56802-8ab9-48c7-856a-af4aac8aebe7 CCTCGTCTGGGAAGGCAGGGA 0.677 32 100 SECISBP2 79048 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 9 91954798 91954798 + Missense_Mutation SNP A A G TCGA-DU-5852-01A-11D-1705-08 TCGA-DU-5852-10A-01D-1705-08 Untested Somatic Phase_I WXS none Illumina GAIIx 7c81bf20-05e8-4fae-8585-c192e8084231 f1c56802-8ab9-48c7-856a-af4aac8aebe7 GAATTTCCCAACCTGGCAGTT 0.398 13 91 ACE2 59272 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 X 15580079 15580079 + Silent SNP T T C TCGA-DU-5852-01A-11D-1705-08 TCGA-DU-5852-10A-01D-1705-08 Untested Somatic Phase_I WXS none Illumina GAIIx 7c81bf20-05e8-4fae-8585-c192e8084231 f1c56802-8ab9-48c7-856a-af4aac8aebe7 GATTATTTTCTCCTTTGCTAA 0.323 44 79 FAM47C 442444 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 X 37027911 37027911 + Silent SNP G G A TCGA-DU-5852-01A-11D-1705-08 TCGA-DU-5852-10A-01D-1705-08 Untested Somatic Phase_I WXS none Illumina GAIIx 7c81bf20-05e8-4fae-8585-c192e8084231 f1c56802-8ab9-48c7-856a-af4aac8aebe7 ATCTCTGCCCGGAGCCTCCAG 0.622 21 39 CACNA1F 778 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 X 49088176 49088176 + Missense_Mutation SNP G G A TCGA-DU-5852-01A-11D-1705-08 TCGA-DU-5852-10A-01D-1705-08 Untested Somatic Phase_I WXS none Illumina GAIIx 7c81bf20-05e8-4fae-8585-c192e8084231 f1c56802-8ab9-48c7-856a-af4aac8aebe7 CCGTCGCAGAGGATTGGCCAG 0.602 14 42 NLGN3 54413 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 X 70389237 70389237 + Nonsense_Mutation SNP C C T TCGA-DU-5852-01A-11D-1705-08 TCGA-DU-5852-10A-01D-1705-08 Untested Somatic Phase_I WXS none Illumina GAIIx 7c81bf20-05e8-4fae-8585-c192e8084231 f1c56802-8ab9-48c7-856a-af4aac8aebe7 ACCAAGGGTCCGAGATCATTA 0.527 5 11 BTK 695 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 X 100613413 100613413 + Silent SNP C C A TCGA-DU-5852-01A-11D-1705-08 TCGA-DU-5852-10A-01D-1705-08 Untested Somatic Phase_I WXS none Illumina GAIIx 7c81bf20-05e8-4fae-8585-c192e8084231 f1c56802-8ab9-48c7-856a-af4aac8aebe7 GACGTATCACCCCTTGAGGGT 0.473 42 73 GPR112 139378 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 X 135405491 135405491 + Missense_Mutation SNP G G A TCGA-DU-5852-01A-11D-1705-08 TCGA-DU-5852-10A-01D-1705-08 Untested Somatic Phase_I WXS none Illumina GAIIx 7c81bf20-05e8-4fae-8585-c192e8084231 f1c56802-8ab9-48c7-856a-af4aac8aebe7 AGTTAGTTGGGAAGAAGACGT 0.438 35 138 SPANXN1 494118 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 X 144337223 144337223 + Silent SNP C C T TCGA-DU-5852-01A-11D-1705-08 TCGA-DU-5852-10A-01D-1705-08 Untested Somatic Phase_I WXS none Illumina GAIIx 7c81bf20-05e8-4fae-8585-c192e8084231 f1c56802-8ab9-48c7-856a-af4aac8aebe7 ACTTAGCCCCCGAACCGAGTT 0.403 35 57 F8 2157 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 X 154065952 154065952 + Nonsense_Mutation SNP G G A rs137852354 TCGA-DU-5852-01A-11D-1705-08 TCGA-DU-5852-10A-01D-1705-08 Untested Somatic Phase_I WXS none Illumina GAIIx 7c81bf20-05e8-4fae-8585-c192e8084231 f1c56802-8ab9-48c7-856a-af4aac8aebe7 GGGTGAATTCGAAGGTAGCGA 0.527 8 24 PPM1J 333926 broad.mit.edu;ucsc.edu 37 1 113252867 113252867 + Missense_Mutation SNP C C T rs113935705 byFrequency TCGA-DU-5852-01A-11D-1705-08 TCGA-DU-5852-10A-01D-1705-08 Untested Somatic Phase_I WXS none Illumina GAIIx 7c81bf20-05e8-4fae-8585-c192e8084231 f1c56802-8ab9-48c7-856a-af4aac8aebe7 GTTGGGGAGACGCCAGCCACG 0.622 34 67 MYOCD 93649 broad.mit.edu;ucsc.edu 37 17 12656007 12656007 + Missense_Mutation SNP G G A TCGA-DU-5852-01A-11D-1705-08 TCGA-DU-5852-10A-01D-1705-08 Untested Somatic Phase_I WXS none Illumina GAIIx 7c81bf20-05e8-4fae-8585-c192e8084231 f1c56802-8ab9-48c7-856a-af4aac8aebe7 CCTGTCAGTCGCTGGGTCCCT 0.627 24 47 TTC3 7267 broad.mit.edu;ucsc.edu 37 21 38536430 38536430 + Missense_Mutation SNP T T G TCGA-DU-5852-01A-11D-1705-08 TCGA-DU-5852-10A-01D-1705-08 Untested Somatic Phase_I WXS none Illumina GAIIx 7c81bf20-05e8-4fae-8585-c192e8084231 f1c56802-8ab9-48c7-856a-af4aac8aebe7 TTCGAAGCTCTCTATGACCAA 0.398 14 59 PLCG1 5335 broad.mit.edu;ucsc.edu 37 20 39802384 39802384 + Missense_Mutation SNP G G A TCGA-DU-5852-01A-11D-1705-08 TCGA-DU-5852-10A-01D-1705-08 Untested Somatic Phase_I WXS none Illumina GAIIx 7c81bf20-05e8-4fae-8585-c192e8084231 f1c56802-8ab9-48c7-856a-af4aac8aebe7 CGTGGTGTATGAGGAAGACAT 0.517 12 109 C10orf71 0 broad.mit.edu;ucsc.edu 37 10 50531225 50531225 + Missense_Mutation SNP C C T TCGA-DU-5852-01A-11D-1705-08 TCGA-DU-5852-10A-01D-1705-08 Untested Somatic Phase_I WXS none Illumina GAIIx 7c81bf20-05e8-4fae-8585-c192e8084231 f1c56802-8ab9-48c7-856a-af4aac8aebe7 AGCTACCAGCCAGGCAGGAAG 0.547 5 11 USE1 55850 broad.mit.edu;ucsc.edu 37 19 17327047 17327047 + Missense_Mutation SNP G G A TCGA-DU-5852-01A-11D-1705-08 TCGA-DU-5852-10A-01D-1705-08 Untested Somatic Phase_I WXS none Illumina GAIIx 7c81bf20-05e8-4fae-8585-c192e8084231 f1c56802-8ab9-48c7-856a-af4aac8aebe7 CACAGCCAGAGAGCGAGTGCC 0.607 17 21 SLC35F1 222553 broad.mit.edu;ucsc.edu 37 6 118635328 118635328 + Missense_Mutation SNP A A C TCGA-DU-5852-01A-11D-1705-08 TCGA-DU-5852-10A-01D-1705-08 Untested Somatic Phase_I WXS none Illumina GAIIx 7c81bf20-05e8-4fae-8585-c192e8084231 f1c56802-8ab9-48c7-856a-af4aac8aebe7 TTGTGGACTTACCGACCACAG 0.597 31 56 NRD1 4898 broad.mit.edu;ucsc.edu 37 1 52301821 52301821 + Missense_Mutation SNP C C T TCGA-DU-5852-01A-11D-1705-08 TCGA-DU-5852-10A-01D-1705-08 Untested Somatic Phase_I WXS none Illumina GAIIx 7c81bf20-05e8-4fae-8585-c192e8084231 f1c56802-8ab9-48c7-856a-af4aac8aebe7 AAAAAGTGTGCCAGCCCCGGC 0.418 3 33 KLRAP1 10748 broad.mit.edu;ucsc.edu 37 12 10746526 10746526 + RNA SNP C C T TCGA-DU-5852-01A-11D-1705-08 TCGA-DU-5852-10A-01D-1705-08 Untested Somatic Phase_I WXS none Illumina GAIIx 7c81bf20-05e8-4fae-8585-c192e8084231 f1c56802-8ab9-48c7-856a-af4aac8aebe7 CTGTTTACATCCCTTCCAGTC 0.363 12 59 SLC9A6 10479 broad.mit.edu;ucsc.edu 37 X 135112296 135112296 + Missense_Mutation SNP G G C TCGA-DU-5852-01A-11D-1705-08 TCGA-DU-5852-10A-01D-1705-08 Untested Somatic Phase_I WXS none Illumina GAIIx 7c81bf20-05e8-4fae-8585-c192e8084231 f1c56802-8ab9-48c7-856a-af4aac8aebe7 TTTAGGGTTGGTGTTGATTCA 0.358 22 74 SLAMF7 57823 broad.mit.edu;ucsc.edu 37 1 160719612 160719612 + Splice_Site SNP G G A TCGA-DU-5852-01A-11D-1705-08 TCGA-DU-5852-10A-01D-1705-08 Untested Somatic Phase_I WXS none Illumina GAIIx 7c81bf20-05e8-4fae-8585-c192e8084231 f1c56802-8ab9-48c7-856a-af4aac8aebe7 CTCTCACAGAGCACCTGTCAA 0.493 54 93 GPR115 221393 broad.mit.edu;ucsc.edu 37 6 47680159 47680159 + Nonsense_Mutation SNP C C T TCGA-DU-5852-01A-11D-1705-08 TCGA-DU-5852-10A-01D-1705-08 Untested Somatic Phase_I WXS none Illumina GAIIx 7c81bf20-05e8-4fae-8585-c192e8084231 f1c56802-8ab9-48c7-856a-af4aac8aebe7 TCTAGACTTTCGAGCTCCAGA 0.423 51 120 POLR2G 5436 broad.mit.edu;ucsc.edu 37 11 62530370 62530370 + Missense_Mutation SNP G G A TCGA-DU-5852-01A-11D-1705-08 TCGA-DU-5852-10A-01D-1705-08 Untested Somatic Phase_I WXS none Illumina GAIIx 7c81bf20-05e8-4fae-8585-c192e8084231 f1c56802-8ab9-48c7-856a-af4aac8aebe7 CACCACCATTGACAATATTGG 0.468 35 66 AIM2 9447 broad.mit.edu;hgsc.bcm.edu 37 1 159032502 159032504 + In_Frame_Del DEL TAA TAA - TCGA-DU-5852-01A-11D-1705-08 TCGA-DU-5852-10A-01D-1705-08 Untested Somatic Phase_I WXS none Illumina GAIIx 7c81bf20-05e8-4fae-8585-c192e8084231 f1c56802-8ab9-48c7-856a-af4aac8aebe7 TTTTTGGCCTTAATAACCTGGAT 0.399 17 54 ATRX 546 ucsc.edu 37 X 76764056 76764056 + Missense_Mutation SNP A A T TCGA-DU-5852-01A-11D-1705-08 TCGA-DU-5852-10A-01D-1705-08 Untested Somatic Phase_I WXS none Illumina GAIIx 7c81bf20-05e8-4fae-8585-c192e8084231 f1c56802-8ab9-48c7-856a-af4aac8aebe7 TGCTGATTGTACTGCTGCTGG 0.413 88 152 EGFR 1956 broad.mit.edu 37 7 55268101 55268101 + Missense_Mutation SNP A A T TCGA-DU-5852-01A-11D-1705-08 TCGA-DU-5852-10A-01D-1705-08 Untested Somatic Phase_I WXS none Illumina GAIIx 7c81bf20-05e8-4fae-8585-c192e8084231 f1c56802-8ab9-48c7-856a-af4aac8aebe7 CTACCTTGTCATTCAGGTACA 0.517 25 1274