Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	ref_context	gc_content	t_alt_count	t_ref_count
FAM178A	55719	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	10	102683830	102683830	+	Missense_Mutation	SNP	G	G	C			TCGA-DU-5853-01A-11D-1893-08	TCGA-DU-5853-10A-01D-1893-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	0750c06c-d62b-42d9-804a-a9b9d76b90ed	fb0e600b-10e0-43fb-b877-0981c762da9b	AAAAGCAAGAGAGTCCTTCCT	0.398	6	50
KRT8	3856	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	12	53293635	53293635	+	Missense_Mutation	SNP	C	C	T			TCGA-DU-5853-01A-11D-1893-08	TCGA-DU-5853-10A-01D-1893-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	0750c06c-d62b-42d9-804a-a9b9d76b90ed	fb0e600b-10e0-43fb-b877-0981c762da9b	AGTCTTTGTGCGCCGCAGGTC	0.602	30	37
SLC5A8	160728	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	12	101577979	101577979	+	Missense_Mutation	SNP	C	C	A			TCGA-DU-5853-01A-11D-1893-08	TCGA-DU-5853-10A-01D-1893-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	0750c06c-d62b-42d9-804a-a9b9d76b90ed	fb0e600b-10e0-43fb-b877-0981c762da9b	TGCAGAATGTCCAGTACCAAA	0.348	9	49
SERPINA9	327657	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	14	94929626	94929626	+	Missense_Mutation	SNP	T	T	A			TCGA-DU-5853-01A-11D-1893-08	TCGA-DU-5853-10A-01D-1893-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	0750c06c-d62b-42d9-804a-a9b9d76b90ed	fb0e600b-10e0-43fb-b877-0981c762da9b	CACAGCCTTGTGGGTTGCCTG	0.502	15	79
TP53	7157	hgsc.bcm.edu;broad.mit.edu	37	17	7577121	7577121	+	Missense_Mutation	SNP	G	G	A	rs121913343		TCGA-DU-5853-01A-11D-1893-08	TCGA-DU-5853-10A-01D-1893-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	0750c06c-d62b-42d9-804a-a9b9d76b90ed	fb0e600b-10e0-43fb-b877-0981c762da9b	GCACAAACACGCACCTCAAAG	0.542	34	5
MUC16	94025	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	19	9046747	9046747	+	Silent	SNP	T	T	A			TCGA-DU-5853-01A-11D-1893-08	TCGA-DU-5853-10A-01D-1893-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	0750c06c-d62b-42d9-804a-a9b9d76b90ed	fb0e600b-10e0-43fb-b877-0981c762da9b	TCACTACCCCTGGTATACTGG	0.512	17	160
NKX2-2	4821	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	20	21492966	21492966	+	Missense_Mutation	SNP	C	C	G			TCGA-DU-5853-01A-11D-1893-08	TCGA-DU-5853-10A-01D-1893-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	0750c06c-d62b-42d9-804a-a9b9d76b90ed	fb0e600b-10e0-43fb-b877-0981c762da9b	GCTCGTAGGTCTGCGCCTTGG	0.692	16	29
PATZ1	23598	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	22	31740738	31740738	+	Missense_Mutation	SNP	C	C	T			TCGA-DU-5853-01A-11D-1893-08	TCGA-DU-5853-10A-01D-1893-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	0750c06c-d62b-42d9-804a-a9b9d76b90ed	fb0e600b-10e0-43fb-b877-0981c762da9b	CCTCAGGCCCCCTGGGGACCC	0.652	7	20
SEMA4F	10505	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	2	74901749	74901749	+	Missense_Mutation	SNP	G	G	A			TCGA-DU-5853-01A-11D-1893-08	TCGA-DU-5853-10A-01D-1893-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	0750c06c-d62b-42d9-804a-a9b9d76b90ed	fb0e600b-10e0-43fb-b877-0981c762da9b	GCTGTGCTTCGACCTGAGCTT	0.562	23	246
IDH1	3417	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	2	209113112	209113112	+	Missense_Mutation	SNP	C	C	T	rs121913500		TCGA-DU-5853-01A-11D-1893-08	TCGA-DU-5853-10A-01D-1893-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	0750c06c-d62b-42d9-804a-a9b9d76b90ed	fb0e600b-10e0-43fb-b877-0981c762da9b	ATAAGCATGACGACCTATGAT	0.393	43	49
SCN10A	6336	hgsc.bcm.edu;broad.mit.edu	37	3	38793869	38793869	+	Missense_Mutation	SNP	G	G	T			TCGA-DU-5853-01A-11D-1893-08	TCGA-DU-5853-10A-01D-1893-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	0750c06c-d62b-42d9-804a-a9b9d76b90ed	fb0e600b-10e0-43fb-b877-0981c762da9b	AGCCCCGATGGCTTTCGTGGT	0.602	7	89
GPR31	2853	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	6	167570606	167570606	+	Silent	SNP	G	G	A			TCGA-DU-5853-01A-11D-1893-08	TCGA-DU-5853-10A-01D-1893-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	0750c06c-d62b-42d9-804a-a9b9d76b90ed	fb0e600b-10e0-43fb-b877-0981c762da9b	TGGCCAGGAAGCAGGGCAGAA	0.592	11	129
NOS3	4846	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	7	150693876	150693876	+	Missense_Mutation	SNP	C	C	T			TCGA-DU-5853-01A-11D-1893-08	TCGA-DU-5853-10A-01D-1893-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	0750c06c-d62b-42d9-804a-a9b9d76b90ed	fb0e600b-10e0-43fb-b877-0981c762da9b	CCACGAACAGCGGCTTCAAGA	0.657	9	30
KMT2C	58508	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	7	151842271	151842271	+	Missense_Mutation	SNP	T	T	G			TCGA-DU-5853-01A-11D-1893-08	TCGA-DU-5853-10A-01D-1893-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	0750c06c-d62b-42d9-804a-a9b9d76b90ed	fb0e600b-10e0-43fb-b877-0981c762da9b	GGCACTCATTTTAGGTTCAGA	0.448	18	142
ATRX	546	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	X	76845411	76845411	+	Splice_Site	SNP	C	C	T			TCGA-DU-5853-01A-11D-1893-08	TCGA-DU-5853-10A-01D-1893-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	0750c06c-d62b-42d9-804a-a9b9d76b90ed	fb0e600b-10e0-43fb-b877-0981c762da9b	GAAAACAAGGCTAAAAAAACA	0.323	23	7
ATP5B	506	broad.mit.edu;ucsc.edu	37	12	57036472	57036472	+	Silent	SNP	G	G	C			TCGA-DU-5853-01A-11D-1893-08	TCGA-DU-5853-10A-01D-1893-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	0750c06c-d62b-42d9-804a-a9b9d76b90ed	fb0e600b-10e0-43fb-b877-0981c762da9b	AACCAGCCTGGGTGAAGCGAA	0.483	27	72
UNC93A	54346	broad.mit.edu;ucsc.edu	37	6	167717405	167717405	+	Splice_Site	SNP	A	A	G			TCGA-DU-5853-01A-11D-1893-08	TCGA-DU-5853-10A-01D-1893-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	0750c06c-d62b-42d9-804a-a9b9d76b90ed	fb0e600b-10e0-43fb-b877-0981c762da9b	ATGTCCTTTCAGGGAGTGGTG	0.537	31	115
DCST1	149095	broad.mit.edu;ucsc.edu	37	1	155013046	155013046	+	Silent	SNP	C	C	T	rs141235792		TCGA-DU-5853-01A-11D-1893-08	TCGA-DU-5853-10A-01D-1893-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	0750c06c-d62b-42d9-804a-a9b9d76b90ed	fb0e600b-10e0-43fb-b877-0981c762da9b	ACAACACCCGCGCAGCTTGGC	0.617	4	10