Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_file Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID ref_context gc_content t_alt_count t_ref_count ITIH2 3698 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 10 7780699 7780699 + Silent SNP G G A TCGA-DU-5855-01A-11D-1705-08 TCGA-DU-5855-10A-01D-1705-08 Untested Somatic Phase_I WXS none Illumina GAIIx d77baeae-05d1-4edc-ba95-7292fcc375fb 603f649f-20bf-409c-88f4-ba1b89933074 TAGAGTCCACGCCACCCCCAC 0.562 12 44 RAG1 5896 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 11 36596675 36596675 + Silent SNP C C T TCGA-DU-5855-01A-11D-1705-08 TCGA-DU-5855-10A-01D-1705-08 Untested Somatic Phase_I WXS none Illumina GAIIx d77baeae-05d1-4edc-ba95-7292fcc375fb 603f649f-20bf-409c-88f4-ba1b89933074 GAATGGGAGACGTGAGTGAGA 0.468 11 34 SORL1 6653 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 11 121421301 121421301 + Missense_Mutation SNP A A G TCGA-DU-5855-01A-11D-1705-08 TCGA-DU-5855-10A-01D-1705-08 Untested Somatic Phase_I WXS none Illumina GAIIx d77baeae-05d1-4edc-ba95-7292fcc375fb 603f649f-20bf-409c-88f4-ba1b89933074 CAGCTACCGGAAGATTTCTGG 0.557 7 65 KCNMB4 27345 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 12 70824288 70824288 + Missense_Mutation SNP G G A TCGA-DU-5855-01A-11D-1705-08 TCGA-DU-5855-10A-01D-1705-08 Untested Somatic Phase_I WXS none Illumina GAIIx d77baeae-05d1-4edc-ba95-7292fcc375fb 603f649f-20bf-409c-88f4-ba1b89933074 CTTCTGCATCGCACTCATGAT 0.488 19 152 HECTD4 283450 hgsc.bcm.edu;broad.mit.edu 37 12 112617095 112617095 + Silent SNP G G C TCGA-DU-5855-01A-11D-1705-08 TCGA-DU-5855-10A-01D-1705-08 Untested Somatic Phase_I WXS none Illumina GAIIx d77baeae-05d1-4edc-ba95-7292fcc375fb 603f649f-20bf-409c-88f4-ba1b89933074 AAATGTCAGAGACTCTGATGG 0.542 6 14 SOHLH2 54937 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 13 36776075 36776075 + Silent SNP A A G TCGA-DU-5855-01A-11D-1705-08 TCGA-DU-5855-10A-01D-1705-08 Untested Somatic Phase_I WXS none Illumina GAIIx d77baeae-05d1-4edc-ba95-7292fcc375fb 603f649f-20bf-409c-88f4-ba1b89933074 CCTTCAAGAGAACCATGTTGA 0.423 23 71 FNDC3A 22862 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 13 49710555 49710555 + Missense_Mutation SNP G G A TCGA-DU-5855-01A-11D-1705-08 TCGA-DU-5855-10A-01D-1705-08 Untested Somatic Phase_I WXS none Illumina GAIIx d77baeae-05d1-4edc-ba95-7292fcc375fb 603f649f-20bf-409c-88f4-ba1b89933074 TTGAAGGATCGCCAAGGAACA 0.388 27 26 NGDN 25983 hgsc.bcm.edu;broad.mit.edu 37 14 23940135 23940135 + Silent SNP A A G TCGA-DU-5855-01A-11D-1705-08 TCGA-DU-5855-10A-01D-1705-08 Untested Somatic Phase_I WXS none Illumina GAIIx d77baeae-05d1-4edc-ba95-7292fcc375fb 603f649f-20bf-409c-88f4-ba1b89933074 TAACTGCACAAGTGAAATCAC 0.368 6 101 RP11-407N17.3 0 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 14 39784908 39784908 + Missense_Mutation SNP G G A TCGA-DU-5855-01A-11D-1705-08 TCGA-DU-5855-10A-01D-1705-08 Untested Somatic Phase_I WXS none Illumina GAIIx d77baeae-05d1-4edc-ba95-7292fcc375fb 603f649f-20bf-409c-88f4-ba1b89933074 TGAGAAAAAAGCACATGATAA 0.254 26 88 EIF2AK4 440275 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 15 40241413 40241413 + Missense_Mutation SNP C C T TCGA-DU-5855-01A-11D-1705-08 TCGA-DU-5855-10A-01D-1705-08 Untested Somatic Phase_I WXS none Illumina GAIIx d77baeae-05d1-4edc-ba95-7292fcc375fb 603f649f-20bf-409c-88f4-ba1b89933074 GCTGGAAAGGCGGGCTCAGGA 0.537 47 79 BUB1B 701 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 15 40509802 40509802 + Silent SNP C C T rs139066741 by1000genomes TCGA-DU-5855-01A-11D-1705-08 TCGA-DU-5855-10A-01D-1705-08 Untested Somatic Phase_I WXS none Illumina GAIIx d77baeae-05d1-4edc-ba95-7292fcc375fb 603f649f-20bf-409c-88f4-ba1b89933074 TTACCCTCAGCGGCTTTCGGA 0.443 95 305 TP53 7157 hgsc.bcm.edu;broad.mit.edu 37 17 7577121 7577121 + Missense_Mutation SNP G G A rs121913343 TCGA-DU-5855-01A-11D-1705-08 TCGA-DU-5855-10A-01D-1705-08 Untested Somatic Phase_I WXS none Illumina GAIIx d77baeae-05d1-4edc-ba95-7292fcc375fb 603f649f-20bf-409c-88f4-ba1b89933074 GCACAAACACGCACCTCAAAG 0.542 23 3 CTC1 80169 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 17 8132163 8132163 + Missense_Mutation SNP T T C TCGA-DU-5855-01A-11D-1705-08 TCGA-DU-5855-10A-01D-1705-08 Untested Somatic Phase_I WXS none Illumina GAIIx d77baeae-05d1-4edc-ba95-7292fcc375fb 603f649f-20bf-409c-88f4-ba1b89933074 CACATGGTGATTCCTACAGGT 0.567 4 20 PSMD3 5709 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 17 38151212 38151212 + Missense_Mutation SNP C C G TCGA-DU-5855-01A-11D-1705-08 TCGA-DU-5855-10A-01D-1705-08 Untested Somatic Phase_I WXS none Illumina GAIIx d77baeae-05d1-4edc-ba95-7292fcc375fb 603f649f-20bf-409c-88f4-ba1b89933074 TCCAGGTGCACAAGCTTCTCA 0.572 19 45 CCR7 1236 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 17 38711759 38711759 + Silent SNP G G A TCGA-DU-5855-01A-11D-1705-08 TCGA-DU-5855-10A-01D-1705-08 Untested Somatic Phase_I WXS none Illumina GAIIx d77baeae-05d1-4edc-ba95-7292fcc375fb 603f649f-20bf-409c-88f4-ba1b89933074 AGTGGACACCGAAGACCCAGG 0.552 19 20 HDAC5 10014 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 17 42169818 42169818 + Missense_Mutation SNP G G A rs138137922 TCGA-DU-5855-01A-11D-1705-08 TCGA-DU-5855-10A-01D-1705-08 Untested Somatic Phase_I WXS none Illumina GAIIx d77baeae-05d1-4edc-ba95-7292fcc375fb 603f649f-20bf-409c-88f4-ba1b89933074 CCATCCTTGCGACGCAGGAGG 0.537 10 13 KLHL14 57565 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 18 30349844 30349844 + Silent SNP C C T TCGA-DU-5855-01A-11D-1705-08 TCGA-DU-5855-10A-01D-1705-08 Untested Somatic Phase_I WXS none Illumina GAIIx d77baeae-05d1-4edc-ba95-7292fcc375fb 603f649f-20bf-409c-88f4-ba1b89933074 TCTGGAAGAGCGCCAGCTCCG 0.657 10 30 FCGBP 8857 hgsc.bcm.edu;broad.mit.edu 37 19 40408740 40408740 + Missense_Mutation SNP C C T TCGA-DU-5855-01A-11D-1705-08 TCGA-DU-5855-10A-01D-1705-08 Untested Somatic Phase_I WXS none Illumina GAIIx d77baeae-05d1-4edc-ba95-7292fcc375fb 603f649f-20bf-409c-88f4-ba1b89933074 AGGTCGTAGGCCACACGCAGG 0.587 16 32 MST1L 11223 hgsc.bcm.edu;broad.mit.edu 37 1 17084292 17084292 + RNA SNP A A G TCGA-DU-5855-01A-11D-1705-08 TCGA-DU-5855-10A-01D-1705-08 Untested Somatic Phase_I WXS none Illumina GAIIx d77baeae-05d1-4edc-ba95-7292fcc375fb 603f649f-20bf-409c-88f4-ba1b89933074 TGGTCCCTGGAGGCACCACAT 0.587 27 181 MST1L 11223 hgsc.bcm.edu;broad.mit.edu 37 1 17084293 17084293 + RNA SNP G G T TCGA-DU-5855-01A-11D-1705-08 TCGA-DU-5855-10A-01D-1705-08 Untested Somatic Phase_I WXS none Illumina GAIIx d77baeae-05d1-4edc-ba95-7292fcc375fb 603f649f-20bf-409c-88f4-ba1b89933074 GGTCCCTGGAGGCACCACATA 0.587 26 179 SCMH1 22955 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 1 41579187 41579187 + Silent SNP C C T TCGA-DU-5855-01A-11D-1705-08 TCGA-DU-5855-10A-01D-1705-08 Untested Somatic Phase_I WXS none Illumina GAIIx d77baeae-05d1-4edc-ba95-7292fcc375fb 603f649f-20bf-409c-88f4-ba1b89933074 TGTGGGAAGGCGATGGTGGCT 0.443 14 24 CFHR5 81494 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 1 196973949 196973949 + Missense_Mutation SNP T T C TCGA-DU-5855-01A-11D-1705-08 TCGA-DU-5855-10A-01D-1705-08 Untested Somatic Phase_I WXS none Illumina GAIIx d77baeae-05d1-4edc-ba95-7292fcc375fb 603f649f-20bf-409c-88f4-ba1b89933074 AAATAAACAGTGGTCAGAACC 0.378 25 58 HHIPL2 79802 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 1 222717481 222717481 + Silent SNP C C T TCGA-DU-5855-01A-11D-1705-08 TCGA-DU-5855-10A-01D-1705-08 Untested Somatic Phase_I WXS none Illumina GAIIx d77baeae-05d1-4edc-ba95-7292fcc375fb 603f649f-20bf-409c-88f4-ba1b89933074 TCCGGAGAGGCGTCTGGGTGT 0.597 40 159 PRND 23627 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 20 4705632 4705632 + Silent SNP C C T TCGA-DU-5855-01A-11D-1705-08 TCGA-DU-5855-10A-01D-1705-08 Untested Somatic Phase_I WXS none Illumina GAIIx d77baeae-05d1-4edc-ba95-7292fcc375fb 603f649f-20bf-409c-88f4-ba1b89933074 TCAAGCATTGCGAGTTTTGGT 0.602 8 38 PLCG1 5335 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 20 39795459 39795459 + Missense_Mutation SNP A A G TCGA-DU-5855-01A-11D-1705-08 TCGA-DU-5855-10A-01D-1705-08 Untested Somatic Phase_I WXS none Illumina GAIIx d77baeae-05d1-4edc-ba95-7292fcc375fb 603f649f-20bf-409c-88f4-ba1b89933074 AAGCTGCGCTATCCCATCAAC 0.562 33 55 MAP3K19 80122 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 2 135744754 135744754 + Missense_Mutation SNP G G A TCGA-DU-5855-01A-11D-1705-08 TCGA-DU-5855-10A-01D-1705-08 Untested Somatic Phase_I WXS none Illumina GAIIx d77baeae-05d1-4edc-ba95-7292fcc375fb 603f649f-20bf-409c-88f4-ba1b89933074 TTTATGCATGGTAGGCTTAAT 0.423 16 98 IFIH1 64135 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 2 163134056 163134056 + Missense_Mutation SNP A A C TCGA-DU-5855-01A-11D-1705-08 TCGA-DU-5855-10A-01D-1705-08 Untested Somatic Phase_I WXS none Illumina GAIIx d77baeae-05d1-4edc-ba95-7292fcc375fb 603f649f-20bf-409c-88f4-ba1b89933074 TATGACTGCAAACTTCTTATC 0.353 17 19 IDH1 3417 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 2 209113112 209113112 + Missense_Mutation SNP C C T rs121913500 TCGA-DU-5855-01A-11D-1705-08 TCGA-DU-5855-10A-01D-1705-08 Untested Somatic Phase_I WXS none Illumina GAIIx d77baeae-05d1-4edc-ba95-7292fcc375fb 603f649f-20bf-409c-88f4-ba1b89933074 ATAAGCATGACGACCTATGAT 0.393 24 52 FLNB 2317 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 3 58094210 58094210 + Missense_Mutation SNP A A G TCGA-DU-5855-01A-11D-1705-08 TCGA-DU-5855-10A-01D-1705-08 Untested Somatic Phase_I WXS none Illumina GAIIx d77baeae-05d1-4edc-ba95-7292fcc375fb 603f649f-20bf-409c-88f4-ba1b89933074 CCAGGTTTGGAGAAATCTGGA 0.448 12 21 LEKR1 389170 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 3 156763496 156763496 + Missense_Mutation SNP A A G TCGA-DU-5855-01A-11D-1705-08 TCGA-DU-5855-10A-01D-1705-08 Untested Somatic Phase_I WXS none Illumina GAIIx d77baeae-05d1-4edc-ba95-7292fcc375fb 603f649f-20bf-409c-88f4-ba1b89933074 GAGACTAGACAGAGACTGGCT 0.547 31 58 IGF2BP2 10644 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 3 185393095 185393095 + Silent SNP G G A TCGA-DU-5855-01A-11D-1705-08 TCGA-DU-5855-10A-01D-1705-08 Untested Somatic Phase_I WXS none Illumina GAIIx d77baeae-05d1-4edc-ba95-7292fcc375fb 603f649f-20bf-409c-88f4-ba1b89933074 TTAACAGCCAGCATATCATTT 0.463 17 134 ANK2 287 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 4 114280346 114280346 + Silent SNP C C T TCGA-DU-5855-01A-11D-1705-08 TCGA-DU-5855-10A-01D-1705-08 Untested Somatic Phase_I WXS none Illumina GAIIx d77baeae-05d1-4edc-ba95-7292fcc375fb 603f649f-20bf-409c-88f4-ba1b89933074 CTGTTGAGACCGAGCACTCAG 0.473 17 77 SEC24D 9871 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 4 119649799 119649799 + Silent SNP G G A TCGA-DU-5855-01A-11D-1705-08 TCGA-DU-5855-10A-01D-1705-08 Untested Somatic Phase_I WXS none Illumina GAIIx d77baeae-05d1-4edc-ba95-7292fcc375fb 603f649f-20bf-409c-88f4-ba1b89933074 ACTTCAGGCAGCAATGTCTTA 0.303 9 51 GFM2 84340 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 5 74034187 74034187 + Missense_Mutation SNP A A C TCGA-DU-5855-01A-11D-1705-08 TCGA-DU-5855-10A-01D-1705-08 Untested Somatic Phase_I WXS none Illumina GAIIx d77baeae-05d1-4edc-ba95-7292fcc375fb 603f649f-20bf-409c-88f4-ba1b89933074 GCAGTCAATGAAGGGATTTCT 0.333 88 83 PCDHAC1 56135 hgsc.bcm.edu;broad.mit.edu 37 5 140308171 140308171 + Missense_Mutation SNP T T C TCGA-DU-5855-01A-11D-1705-08 TCGA-DU-5855-10A-01D-1705-08 Untested Somatic Phase_I WXS none Illumina GAIIx d77baeae-05d1-4edc-ba95-7292fcc375fb 603f649f-20bf-409c-88f4-ba1b89933074 AATGGTTCTGTCCCAGTGGAA 0.473 7 108 STK10 6793 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 5 171520604 171520604 + Missense_Mutation SNP C C T TCGA-DU-5855-01A-11D-1705-08 TCGA-DU-5855-10A-01D-1705-08 Untested Somatic Phase_I WXS none Illumina GAIIx d77baeae-05d1-4edc-ba95-7292fcc375fb 603f649f-20bf-409c-88f4-ba1b89933074 GTCTCCAGGGCGCTGCTGTTG 0.647 10 56 NPC1L1 29881 hgsc.bcm.edu;ucsc.edu 37 7 44579068 44579068 + Missense_Mutation SNP C C T rs79803700 byFrequency TCGA-DU-5855-01A-11D-1705-08 TCGA-DU-5855-10A-01D-1705-08 Untested Somatic Phase_I WXS none Illumina GAIIx d77baeae-05d1-4edc-ba95-7292fcc375fb 603f649f-20bf-409c-88f4-ba1b89933074 TTGTCCCTGGCGGGGGCCACA 0.602 19 98 LMTK2 22853 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 7 97823142 97823142 + Missense_Mutation SNP G G A TCGA-DU-5855-01A-11D-1705-08 TCGA-DU-5855-10A-01D-1705-08 Untested Somatic Phase_I WXS none Illumina GAIIx d77baeae-05d1-4edc-ba95-7292fcc375fb 603f649f-20bf-409c-88f4-ba1b89933074 GAGGTCCCGGGAACCTCCCCA 0.607 29 39 COG5 10466 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 7 107204267 107204267 + Silent SNP G G C TCGA-DU-5855-01A-11D-1705-08 TCGA-DU-5855-10A-01D-1705-08 Untested Somatic Phase_I WXS none Illumina GAIIx d77baeae-05d1-4edc-ba95-7292fcc375fb 603f649f-20bf-409c-88f4-ba1b89933074 GAAGTTCCCGGACTGTAGCTG 0.667 11 24 PLXNA4 91584 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 7 131848964 131848964 + Silent SNP G G A TCGA-DU-5855-01A-11D-1705-08 TCGA-DU-5855-10A-01D-1705-08 Untested Somatic Phase_I WXS none Illumina GAIIx d77baeae-05d1-4edc-ba95-7292fcc375fb 603f649f-20bf-409c-88f4-ba1b89933074 AGCGGGCCTCGCCCGTGATGG 0.592 8 32 SHH 6469 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 7 155599004 155599004 + Missense_Mutation SNP C C T TCGA-DU-5855-01A-11D-1705-08 TCGA-DU-5855-10A-01D-1705-08 Untested Somatic Phase_I WXS none Illumina GAIIx d77baeae-05d1-4edc-ba95-7292fcc375fb 603f649f-20bf-409c-88f4-ba1b89933074 TTTCACCGAGCAGTGGATATG 0.622 25 88 EPPK1 83481 hgsc.bcm.edu;broad.mit.edu 37 8 144942235 144942235 + Silent SNP G G A TCGA-DU-5855-01A-11D-1705-08 TCGA-DU-5855-10A-01D-1705-08 Untested Somatic Phase_I WXS none Illumina GAIIx d77baeae-05d1-4edc-ba95-7292fcc375fb 603f649f-20bf-409c-88f4-ba1b89933074 TGTTGGGGTCGAAGAAGCCCT 0.622 35 58 SVEP1 79987 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 9 113139596 113139596 + Missense_Mutation SNP C C A TCGA-DU-5855-01A-11D-1705-08 TCGA-DU-5855-10A-01D-1705-08 Untested Somatic Phase_I WXS none Illumina GAIIx d77baeae-05d1-4edc-ba95-7292fcc375fb 603f649f-20bf-409c-88f4-ba1b89933074 CAGGAACAAGCATTTGGGCGT 0.507 20 45 MAGEB10 139422 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 X 27840125 27840125 + Silent SNP C C T TCGA-DU-5855-01A-11D-1705-08 TCGA-DU-5855-10A-01D-1705-08 Untested Somatic Phase_I WXS none Illumina GAIIx d77baeae-05d1-4edc-ba95-7292fcc375fb 603f649f-20bf-409c-88f4-ba1b89933074 GGTTATATGACGGAATTGAGC 0.468 8 44 ARHGEF6 9459 hgsc.bcm.edu;broad.mit.edu 37 X 135825810 135825810 + Nonsense_Mutation SNP C C A TCGA-DU-5855-01A-11D-1705-08 TCGA-DU-5855-10A-01D-1705-08 Untested Somatic Phase_I WXS none Illumina GAIIx d77baeae-05d1-4edc-ba95-7292fcc375fb 603f649f-20bf-409c-88f4-ba1b89933074 AATGTGCCTTCCCACCAGCCT 0.408 13 222 MAGEC3 139081 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 X 140969496 140969496 + Missense_Mutation SNP C C A TCGA-DU-5855-01A-11D-1705-08 TCGA-DU-5855-10A-01D-1705-08 Untested Somatic Phase_I WXS none Illumina GAIIx d77baeae-05d1-4edc-ba95-7292fcc375fb 603f649f-20bf-409c-88f4-ba1b89933074 CCAGAACCGCCTCCTGATTCT 0.502 32 215 TMEM9 252839 broad.mit.edu;ucsc.edu 37 1 201112999 201112999 + Missense_Mutation SNP G G C TCGA-DU-5855-01A-11D-1705-08 TCGA-DU-5855-10A-01D-1705-08 Untested Somatic Phase_I WXS none Illumina GAIIx d77baeae-05d1-4edc-ba95-7292fcc375fb 603f649f-20bf-409c-88f4-ba1b89933074 CCGGCTTTCGGATCAGAGGGT 0.572 4 42 FOSB 2354 broad.mit.edu;ucsc.edu 37 19 45974181 45974181 + Missense_Mutation SNP C C T TCGA-DU-5855-01A-11D-1705-08 TCGA-DU-5855-10A-01D-1705-08 Untested Somatic Phase_I WXS none Illumina GAIIx d77baeae-05d1-4edc-ba95-7292fcc375fb 603f649f-20bf-409c-88f4-ba1b89933074 AGCCCGAGCCCGGCCTAGGAG 0.632 15 28 MDM4 4194 broad.mit.edu;ucsc.edu 37 1 204518349 204518349 + Missense_Mutation SNP A A C TCGA-DU-5855-01A-11D-1705-08 TCGA-DU-5855-10A-01D-1705-08 Untested Somatic Phase_I WXS none Illumina GAIIx d77baeae-05d1-4edc-ba95-7292fcc375fb 603f649f-20bf-409c-88f4-ba1b89933074 TTCAAAGTTAACCCATTCTCT 0.428 15 121 KRT73 319101 broad.mit.edu;ucsc.edu 37 12 53008406 53008406 + Missense_Mutation SNP G G A TCGA-DU-5855-01A-11D-1705-08 TCGA-DU-5855-10A-01D-1705-08 Untested Somatic Phase_I WXS none Illumina GAIIx d77baeae-05d1-4edc-ba95-7292fcc375fb 603f649f-20bf-409c-88f4-ba1b89933074 TCCATCCAGGGCATCCACCTT 0.542 5 47 ATRX 546 broad.mit.edu;ucsc.edu 37 X 76909629 76909629 + Nonsense_Mutation SNP G G A TCGA-DU-5855-01A-11D-1705-08 TCGA-DU-5855-10A-01D-1705-08 Untested Somatic Phase_I WXS none Illumina GAIIx d77baeae-05d1-4edc-ba95-7292fcc375fb 603f649f-20bf-409c-88f4-ba1b89933074 TTAATACGTCGCCTTTTCTTT 0.328 41 102 ASB9 140462 broad.mit.edu;ucsc.edu 37 X 15272893 15272893 + Missense_Mutation SNP G G A TCGA-DU-5855-01A-11D-1705-08 TCGA-DU-5855-10A-01D-1705-08 Untested Somatic Phase_I WXS none Illumina GAIIx d77baeae-05d1-4edc-ba95-7292fcc375fb 603f649f-20bf-409c-88f4-ba1b89933074 CTTCACACAAGAGAGATGACC 0.443 25 205 PTPRF 5792 broad.mit.edu;ucsc.edu 37 1 44079328 44079328 + Missense_Mutation SNP C C T TCGA-DU-5855-01A-11D-1705-08 TCGA-DU-5855-10A-01D-1705-08 Untested Somatic Phase_I WXS none Illumina GAIIx d77baeae-05d1-4edc-ba95-7292fcc375fb 603f649f-20bf-409c-88f4-ba1b89933074 ACCGACCTGGCGGACAACATC 0.597 19 45 ARID2 196528 broad.mit.edu;hgsc.bcm.edu 37 12 46245951 46245960 + Frame_Shift_Del DEL ATCAAAAGTG ATCAAAAGTG - TCGA-DU-5855-01A-11D-1705-08 TCGA-DU-5855-10A-01D-1705-08 Untested Somatic Phase_I WXS none Illumina GAIIx d77baeae-05d1-4edc-ba95-7292fcc375fb 603f649f-20bf-409c-88f4-ba1b89933074 CATGCAAGATATCAAAAGTGATTTGAGAAA 0.357 19 41