Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_file Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID ref_context gc_content t_alt_count t_ref_count TRIM51 84767 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 11 55655604 55655604 + Nonsense_Mutation SNP C C T TCGA-DU-5872-01A-11D-1705-08 TCGA-DU-5872-10A-01D-1705-08 Untested Somatic Phase_I WXS none Illumina GAIIx d597128b-776d-4925-908d-e5e1e4b18f8b ded34f93-720b-42b6-8a5c-680d6beab0e7 GGAAAGGCTGCGAAAGGAGGG 0.433 22 42 PRICKLE1 144165 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 12 42858963 42858963 + Silent SNP A A G TCGA-DU-5872-01A-11D-1705-08 TCGA-DU-5872-10A-01D-1705-08 Untested Somatic Phase_I WXS none Illumina GAIIx d597128b-776d-4925-908d-e5e1e4b18f8b ded34f93-720b-42b6-8a5c-680d6beab0e7 GAAGGAAGGGACATCCCAACA 0.522 19 27 TP53 7157 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 17 7578394 7578394 + Missense_Mutation SNP T T C TCGA-DU-5872-01A-11D-1705-08 TCGA-DU-5872-10A-01D-1705-08 Untested Somatic Phase_I WXS none Illumina GAIIx d597128b-776d-4925-908d-e5e1e4b18f8b ded34f93-720b-42b6-8a5c-680d6beab0e7 GCAGCGCTCATGGTGGGGGCA 0.642 45 15 PSMD12 5718 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 17 65341917 65341917 + Silent SNP T T A TCGA-DU-5872-01A-11D-1705-08 TCGA-DU-5872-10A-01D-1705-08 Untested Somatic Phase_I WXS none Illumina GAIIx d597128b-776d-4925-908d-e5e1e4b18f8b ded34f93-720b-42b6-8a5c-680d6beab0e7 GAACCAAATCTGACTGTTCAT 0.358 27 38 LAMA3 3909 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 18 21425086 21425086 + Silent SNP T T G TCGA-DU-5872-01A-11D-1705-08 TCGA-DU-5872-10A-01D-1705-08 Untested Somatic Phase_I WXS none Illumina GAIIx d597128b-776d-4925-908d-e5e1e4b18f8b ded34f93-720b-42b6-8a5c-680d6beab0e7 GCTTTTACCTTGAGTGAGTAT 0.493 16 20 RERE 473 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 1 8421423 8421423 + Missense_Mutation SNP A A G TCGA-DU-5872-01A-11D-1705-08 TCGA-DU-5872-10A-01D-1705-08 Untested Somatic Phase_I WXS none Illumina GAIIx d597128b-776d-4925-908d-e5e1e4b18f8b ded34f93-720b-42b6-8a5c-680d6beab0e7 GGGGCTGGGGATGCTCGGGGA 0.627 23 39 TAS1R2 80834 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 1 19166820 19166820 + Nonsense_Mutation SNP G G T TCGA-DU-5872-01A-11D-1705-08 TCGA-DU-5872-10A-01D-1705-08 Untested Somatic Phase_I WXS none Illumina GAIIx d597128b-776d-4925-908d-e5e1e4b18f8b ded34f93-720b-42b6-8a5c-680d6beab0e7 GCCCCCAGCCGAGCGAACTAT 0.647 26 45 COL11A1 1301 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 1 103380351 103380351 + Missense_Mutation SNP C C T TCGA-DU-5872-01A-11D-1705-08 TCGA-DU-5872-10A-01D-1705-08 Untested Somatic Phase_I WXS none Illumina GAIIx d597128b-776d-4925-908d-e5e1e4b18f8b ded34f93-720b-42b6-8a5c-680d6beab0e7 TTTCTCTCCTCTTTCTCCTTT 0.453 12 22 PIAS3 10401 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 1 145585437 145585437 + Missense_Mutation SNP C C G TCGA-DU-5872-01A-11D-1705-08 TCGA-DU-5872-10A-01D-1705-08 Untested Somatic Phase_I WXS none Illumina GAIIx d597128b-776d-4925-908d-e5e1e4b18f8b ded34f93-720b-42b6-8a5c-680d6beab0e7 GACCCCTTCTCACTTTCTGGG 0.637 52 55 FAM161A 84140 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 2 62067511 62067511 + Missense_Mutation SNP C C A TCGA-DU-5872-01A-11D-1705-08 TCGA-DU-5872-10A-01D-1705-08 Untested Somatic Phase_I WXS none Illumina GAIIx d597128b-776d-4925-908d-e5e1e4b18f8b ded34f93-720b-42b6-8a5c-680d6beab0e7 CGAATATAATCCTCAACACAA 0.408 68 118 BUB1 699 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 2 111423902 111423902 + Missense_Mutation SNP T T C TCGA-DU-5872-01A-11D-1705-08 TCGA-DU-5872-10A-01D-1705-08 Untested Somatic Phase_I WXS none Illumina GAIIx d597128b-776d-4925-908d-e5e1e4b18f8b ded34f93-720b-42b6-8a5c-680d6beab0e7 TGATGCAACTTCTTATGAAGT 0.428 12 25 WDR33 55339 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 2 128522748 128522748 + Splice_Site SNP C C G TCGA-DU-5872-01A-11D-1705-08 TCGA-DU-5872-10A-01D-1705-08 Untested Somatic Phase_I WXS none Illumina GAIIx d597128b-776d-4925-908d-e5e1e4b18f8b ded34f93-720b-42b6-8a5c-680d6beab0e7 TTATCATTACCTGTAATATTG 0.398 13 13 IDH1 3417 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 2 209113112 209113112 + Missense_Mutation SNP C C T rs121913500 TCGA-DU-5872-01A-11D-1705-08 TCGA-DU-5872-10A-01D-1705-08 Untested Somatic Phase_I WXS none Illumina GAIIx d597128b-776d-4925-908d-e5e1e4b18f8b ded34f93-720b-42b6-8a5c-680d6beab0e7 ATAAGCATGACGACCTATGAT 0.393 32 47 SPP2 6694 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 2 234969077 234969077 + Missense_Mutation SNP G G A TCGA-DU-5872-01A-11D-1705-08 TCGA-DU-5872-10A-01D-1705-08 Untested Somatic Phase_I WXS none Illumina GAIIx d597128b-776d-4925-908d-e5e1e4b18f8b ded34f93-720b-42b6-8a5c-680d6beab0e7 GTGCATGCTCGCTGCAGCTGG 0.577 23 40 HDAC4 9759 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 2 239976491 239976491 + Silent SNP G G A TCGA-DU-5872-01A-11D-1705-08 TCGA-DU-5872-10A-01D-1705-08 Untested Somatic Phase_I WXS none Illumina GAIIx d597128b-776d-4925-908d-e5e1e4b18f8b ded34f93-720b-42b6-8a5c-680d6beab0e7 CGTTTGCATTGGGTCTTTGCT 0.507 37 70 PROS1 5627 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 3 93624931 93624931 + Missense_Mutation SNP T T C TCGA-DU-5872-01A-11D-1705-08 TCGA-DU-5872-10A-01D-1705-08 Untested Somatic Phase_I WXS none Illumina GAIIx d597128b-776d-4925-908d-e5e1e4b18f8b ded34f93-720b-42b6-8a5c-680d6beab0e7 TTTCCATCTTTGCAGCTCATA 0.408 69 107 PLCH1 23007 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 3 155200741 155200741 + Missense_Mutation SNP A A G TCGA-DU-5872-01A-11D-1705-08 TCGA-DU-5872-10A-01D-1705-08 Untested Somatic Phase_I WXS none Illumina GAIIx d597128b-776d-4925-908d-e5e1e4b18f8b ded34f93-720b-42b6-8a5c-680d6beab0e7 ATCTTTGTGGAGCAGAGCACT 0.453 28 53 SPATA16 83893 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 3 172631478 172631478 + Silent SNP A A G TCGA-DU-5872-01A-11D-1705-08 TCGA-DU-5872-10A-01D-1705-08 Untested Somatic Phase_I WXS none Illumina GAIIx d597128b-776d-4925-908d-e5e1e4b18f8b ded34f93-720b-42b6-8a5c-680d6beab0e7 ACACACGTTCATTATTGTTTC 0.373 26 40 TRRAP 8295 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 7 98545941 98545941 + Missense_Mutation SNP C C T TCGA-DU-5872-01A-11D-1705-08 TCGA-DU-5872-10A-01D-1705-08 Untested Somatic Phase_I WXS none Illumina GAIIx d597128b-776d-4925-908d-e5e1e4b18f8b ded34f93-720b-42b6-8a5c-680d6beab0e7 GTCATGAAAACGGAGCGGGCG 0.498 34 84 CRYGN 155051 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 7 151135095 151135095 + Missense_Mutation SNP C C T rs148445096 TCGA-DU-5872-01A-11D-1705-08 TCGA-DU-5872-10A-01D-1705-08 Untested Somatic Phase_I WXS none Illumina GAIIx d597128b-776d-4925-908d-e5e1e4b18f8b ded34f93-720b-42b6-8a5c-680d6beab0e7 TCCTACAGGCCGACAGGAGCC 0.627 27 34 CA9 768 hgsc.bcm.edu;ucsc.edu 37 9 35674208 35674208 + Silent SNP T T C rs137897809 by1000genomes TCGA-DU-5872-01A-11D-1705-08 TCGA-DU-5872-10A-01D-1705-08 Untested Somatic Phase_I WXS none Illumina GAIIx d597128b-776d-4925-908d-e5e1e4b18f8b ded34f93-720b-42b6-8a5c-680d6beab0e7 AGGATCTACCTGGAGAGGAGG 0.542 7 15 RORB 6096 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 9 77257427 77257427 + Missense_Mutation SNP G G C TCGA-DU-5872-01A-11D-1705-08 TCGA-DU-5872-10A-01D-1705-08 Untested Somatic Phase_I WXS none Illumina GAIIx d597128b-776d-4925-908d-e5e1e4b18f8b ded34f93-720b-42b6-8a5c-680d6beab0e7 ggcagcagcagAGTGGGGAGG 0.592 11 38 SETX 23064 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 9 135205145 135205145 + Missense_Mutation SNP T T C TCGA-DU-5872-01A-11D-1705-08 TCGA-DU-5872-10A-01D-1705-08 Untested Somatic Phase_I WXS none Illumina GAIIx d597128b-776d-4925-908d-e5e1e4b18f8b ded34f93-720b-42b6-8a5c-680d6beab0e7 GCAGGAGAGATTTTACATGCA 0.353 28 38 CCDC160 347475 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 X 133379653 133379653 + Missense_Mutation SNP C C T TCGA-DU-5872-01A-11D-1705-08 TCGA-DU-5872-10A-01D-1705-08 Untested Somatic Phase_I WXS none Illumina GAIIx d597128b-776d-4925-908d-e5e1e4b18f8b ded34f93-720b-42b6-8a5c-680d6beab0e7 GGCAAAGATCCGCGGAGAGCT 0.383 9 13 PLXNA3 55558 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 X 153688767 153688767 + Missense_Mutation SNP A A G rs142949704 TCGA-DU-5872-01A-11D-1705-08 TCGA-DU-5872-10A-01D-1705-08 Untested Somatic Phase_I WXS none Illumina GAIIx d597128b-776d-4925-908d-e5e1e4b18f8b ded34f93-720b-42b6-8a5c-680d6beab0e7 CCCGCCCCCCAGCATGCGCGT 0.672 10 15 ZNF451 26036 broad.mit.edu;ucsc.edu 37 6 57012701 57012701 + Nonsense_Mutation SNP G G A TCGA-DU-5872-01A-11D-1705-08 TCGA-DU-5872-10A-01D-1705-08 Untested Somatic Phase_I WXS none Illumina GAIIx d597128b-776d-4925-908d-e5e1e4b18f8b ded34f93-720b-42b6-8a5c-680d6beab0e7 GGGGTAAATGGCAATGCCGGA 0.418 40 58 CPO 130749 broad.mit.edu;ucsc.edu 37 2 207814342 207814342 + Splice_Site SNP T T C TCGA-DU-5872-01A-11D-1705-08 TCGA-DU-5872-10A-01D-1705-08 Untested Somatic Phase_I WXS none Illumina GAIIx d597128b-776d-4925-908d-e5e1e4b18f8b ded34f93-720b-42b6-8a5c-680d6beab0e7 CCTTTGCAGATCCTTAGCCCA 0.473 25 41 AKAP4 8852 broad.mit.edu;ucsc.edu 37 X 49957597 49957597 + Silent SNP A A G TCGA-DU-5872-01A-11D-1705-08 TCGA-DU-5872-10A-01D-1705-08 Untested Somatic Phase_I WXS none Illumina GAIIx d597128b-776d-4925-908d-e5e1e4b18f8b ded34f93-720b-42b6-8a5c-680d6beab0e7 CACTTTGGCCACCTCCACACT 0.488 31 66 ATRX 546 broad.mit.edu;ucsc.edu 37 X 76813106 76813106 + Missense_Mutation SNP T T G TCGA-DU-5872-01A-11D-1705-08 TCGA-DU-5872-10A-01D-1705-08 Untested Somatic Phase_I WXS none Illumina GAIIx d597128b-776d-4925-908d-e5e1e4b18f8b ded34f93-720b-42b6-8a5c-680d6beab0e7 AATCTTATCTTCCATGGTTCC 0.338 35 65 COL1A2 1278 broad.mit.edu;ucsc.edu 37 7 94057712 94057712 + Missense_Mutation SNP C C T TCGA-DU-5872-01A-11D-1705-08 TCGA-DU-5872-10A-01D-1705-08 Untested Somatic Phase_I WXS none Illumina GAIIx d597128b-776d-4925-908d-e5e1e4b18f8b ded34f93-720b-42b6-8a5c-680d6beab0e7 TGAAAACATCCCAGCCAAGAA 0.488 34 100