Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_file Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID ref_context gc_content t_alt_count t_ref_count OR10S1 219873 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 11 123847515 123847515 + Missense_Mutation SNP G G A TCGA-DU-6393-01A-11D-1705-08 TCGA-DU-6393-10A-01D-1705-08 Untested Somatic Phase_I WXS none Illumina GAIIx 507dfb6e-244c-408c-a9e4-bce950ceadca 9dd8e0bf-af83-43fa-baf9-c445c02c1014 GTTGAGCATTGGAGTTACGAT 0.542 87 65 GRIN2B 2904 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 12 13716187 13716187 + Nonsense_Mutation SNP G G A TCGA-DU-6393-01A-11D-1705-08 TCGA-DU-6393-10A-01D-1705-08 Untested Somatic Phase_I WXS none Illumina GAIIx 507dfb6e-244c-408c-a9e4-bce950ceadca 9dd8e0bf-af83-43fa-baf9-c445c02c1014 TCCATGAATCGGCCCTTGTCT 0.597 29 31 NPAP1 23742 hgsc.bcm.edu;broad.mit.edu 37 15 24921723 24921723 + Missense_Mutation SNP C C T TCGA-DU-6393-01A-11D-1705-08 TCGA-DU-6393-10A-01D-1705-08 Untested Somatic Phase_I WXS none Illumina GAIIx 507dfb6e-244c-408c-a9e4-bce950ceadca 9dd8e0bf-af83-43fa-baf9-c445c02c1014 CTTGGAAGGCCCTGCCATGCC 0.622 11 0 ADAM10 102 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 15 58925546 58925546 + Missense_Mutation SNP C C T TCGA-DU-6393-01A-11D-1705-08 TCGA-DU-6393-10A-01D-1705-08 Untested Somatic Phase_I WXS none Illumina GAIIx 507dfb6e-244c-408c-a9e4-bce950ceadca 9dd8e0bf-af83-43fa-baf9-c445c02c1014 TTCACATATTCCTCCAGAGCT 0.343 18 6 HEATR3 55027 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 16 50136288 50136288 + Missense_Mutation SNP C C T TCGA-DU-6393-01A-11D-1705-08 TCGA-DU-6393-10A-01D-1705-08 Untested Somatic Phase_I WXS none Illumina GAIIx 507dfb6e-244c-408c-a9e4-bce950ceadca 9dd8e0bf-af83-43fa-baf9-c445c02c1014 GAAAGAGCCTCGATTCAAATT 0.378 34 88 NOS2 4843 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 17 26107803 26107803 + Missense_Mutation SNP C C T TCGA-DU-6393-01A-11D-1705-08 TCGA-DU-6393-10A-01D-1705-08 Untested Somatic Phase_I WXS none Illumina GAIIx 507dfb6e-244c-408c-a9e4-bce950ceadca 9dd8e0bf-af83-43fa-baf9-c445c02c1014 TTGGGATGTTCCATGGCCACC 0.597 15 30 CACNA1G 8913 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 17 48669423 48669423 + Silent SNP C C T TCGA-DU-6393-01A-11D-1705-08 TCGA-DU-6393-10A-01D-1705-08 Untested Somatic Phase_I WXS none Illumina GAIIx 507dfb6e-244c-408c-a9e4-bce950ceadca 9dd8e0bf-af83-43fa-baf9-c445c02c1014 ATTTGCTGGTCGCCATTCTGG 0.572 18 25 MTOR 2475 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 1 11177096 11177096 + Missense_Mutation SNP C C T TCGA-DU-6393-01A-11D-1705-08 TCGA-DU-6393-10A-01D-1705-08 Untested Somatic Phase_I WXS none Illumina GAIIx 507dfb6e-244c-408c-a9e4-bce950ceadca 9dd8e0bf-af83-43fa-baf9-c445c02c1014 CAACCATTGACATGACCGCTA 0.383 34 13 INSL5 10022 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 1 67266844 67266844 + Missense_Mutation SNP G G A rs146406445 byFrequency TCGA-DU-6393-01A-11D-1705-08 TCGA-DU-6393-10A-01D-1705-08 Untested Somatic Phase_I WXS none Illumina GAIIx 507dfb6e-244c-408c-a9e4-bce950ceadca 9dd8e0bf-af83-43fa-baf9-c445c02c1014 TCCTTGCTCCGCACTTCTGAG 0.453 12 21 ASB17 127247 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 1 76387892 76387892 + Missense_Mutation SNP A A G TCGA-DU-6393-01A-11D-1705-08 TCGA-DU-6393-10A-01D-1705-08 Untested Somatic Phase_I WXS none Illumina GAIIx 507dfb6e-244c-408c-a9e4-bce950ceadca 9dd8e0bf-af83-43fa-baf9-c445c02c1014 GTAGAGTACTATTGTTAAGAC 0.358 23 9 TCHH 7062 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 1 152085364 152085364 + Missense_Mutation SNP A A G TCGA-DU-6393-01A-11D-1705-08 TCGA-DU-6393-10A-01D-1705-08 Untested Somatic Phase_I WXS none Illumina GAIIx 507dfb6e-244c-408c-a9e4-bce950ceadca 9dd8e0bf-af83-43fa-baf9-c445c02c1014 GCGATCTTGTAACAGGCTCTC 0.542 98 77 FCRL1 115350 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 1 157766909 157766909 + Missense_Mutation SNP C C T TCGA-DU-6393-01A-11D-1705-08 TCGA-DU-6393-10A-01D-1705-08 Untested Somatic Phase_I WXS none Illumina GAIIx 507dfb6e-244c-408c-a9e4-bce950ceadca 9dd8e0bf-af83-43fa-baf9-c445c02c1014 CCATATGTGTCCCCAGGGTTT 0.403 29 76 KRTAP10-10 353333 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 21 46057415 46057415 + Silent SNP C C T TCGA-DU-6393-01A-11D-1705-08 TCGA-DU-6393-10A-01D-1705-08 Untested Somatic Phase_I WXS none Illumina GAIIx 507dfb6e-244c-408c-a9e4-bce950ceadca 9dd8e0bf-af83-43fa-baf9-c445c02c1014 AGAGCTGCTGCGAGCCCTGCT 0.682 50 84 TTN 7273 hgsc.bcm.edu;ucsc.edu 37 2 179614115 179614115 + Missense_Mutation SNP G G A TCGA-DU-6393-01A-11D-1705-08 TCGA-DU-6393-10A-01D-1705-08 Untested Somatic Phase_I WXS none Illumina GAIIx 507dfb6e-244c-408c-a9e4-bce950ceadca 9dd8e0bf-af83-43fa-baf9-c445c02c1014 GAAGCACCATGCACAAATCTG 0.403 66 72 IDH1 3417 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 2 209113112 209113112 + Missense_Mutation SNP C C T rs121913500 TCGA-DU-6393-01A-11D-1705-08 TCGA-DU-6393-10A-01D-1705-08 Untested Somatic Phase_I WXS none Illumina GAIIx 507dfb6e-244c-408c-a9e4-bce950ceadca 9dd8e0bf-af83-43fa-baf9-c445c02c1014 ATAAGCATGACGACCTATGAT 0.393 23 44 DIS3L2 129563 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 2 233028242 233028242 + Missense_Mutation SNP G G A TCGA-DU-6393-01A-11D-1705-08 TCGA-DU-6393-10A-01D-1705-08 Untested Somatic Phase_I WXS none Illumina GAIIx 507dfb6e-244c-408c-a9e4-bce950ceadca 9dd8e0bf-af83-43fa-baf9-c445c02c1014 AGAGTATGGCGTGGATTTCTC 0.453 15 37 ZBTB20 26137 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 3 114069362 114069362 + Silent SNP G G A TCGA-DU-6393-01A-11D-1705-08 TCGA-DU-6393-10A-01D-1705-08 Untested Somatic Phase_I WXS none Illumina GAIIx 507dfb6e-244c-408c-a9e4-bce950ceadca 9dd8e0bf-af83-43fa-baf9-c445c02c1014 GGAAAGGCTTGGGGCCACTGC 0.627 31 52 BFSP2 8419 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 3 133119336 133119336 + Missense_Mutation SNP C C T TCGA-DU-6393-01A-11D-1705-08 TCGA-DU-6393-10A-01D-1705-08 Untested Somatic Phase_I WXS none Illumina GAIIx 507dfb6e-244c-408c-a9e4-bce950ceadca 9dd8e0bf-af83-43fa-baf9-c445c02c1014 AACACAACTGCGGATGCACCT 0.607 20 28 GPR98 84059 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 5 90000251 90000251 + Missense_Mutation SNP A A T TCGA-DU-6393-01A-11D-1705-08 TCGA-DU-6393-10A-01D-1705-08 Untested Somatic Phase_I WXS none Illumina GAIIx 507dfb6e-244c-408c-a9e4-bce950ceadca 9dd8e0bf-af83-43fa-baf9-c445c02c1014 GGATGACAACATTCCTGAGGA 0.333 5 5 RELN 5649 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 7 103180840 103180840 + Missense_Mutation SNP G G A TCGA-DU-6393-01A-11D-1705-08 TCGA-DU-6393-10A-01D-1705-08 Untested Somatic Phase_I WXS none Illumina GAIIx 507dfb6e-244c-408c-a9e4-bce950ceadca 9dd8e0bf-af83-43fa-baf9-c445c02c1014 TAGGAGCACGGGTTGACTCCT 0.488 52 40 MKRN1 23608 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 7 140154990 140154990 + Missense_Mutation SNP G G A TCGA-DU-6393-01A-11D-1705-08 TCGA-DU-6393-10A-01D-1705-08 Untested Somatic Phase_I WXS none Illumina GAIIx 507dfb6e-244c-408c-a9e4-bce950ceadca 9dd8e0bf-af83-43fa-baf9-c445c02c1014 CCTCCAAATGGGCAGCTCCCA 0.483 10 146 PROSC 11212 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 8 37623846 37623846 + Missense_Mutation SNP C C G TCGA-DU-6393-01A-11D-1705-08 TCGA-DU-6393-10A-01D-1705-08 Untested Somatic Phase_I WXS none Illumina GAIIx 507dfb6e-244c-408c-a9e4-bce950ceadca 9dd8e0bf-af83-43fa-baf9-c445c02c1014 TGGCCACCTACAGAAACAAAA 0.358 54 98 TNFRSF11B 4982 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 8 119945444 119945444 + Silent SNP G G A TCGA-DU-6393-01A-11D-1705-08 TCGA-DU-6393-10A-01D-1705-08 Untested Somatic Phase_I WXS none Illumina GAIIx 507dfb6e-244c-408c-a9e4-bce950ceadca 9dd8e0bf-af83-43fa-baf9-c445c02c1014 GAGGACATTTGTCACACAACA 0.483 94 133 GLIS3 169792 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 9 3829411 3829411 + Missense_Mutation SNP C C G TCGA-DU-6393-01A-11D-1705-08 TCGA-DU-6393-10A-01D-1705-08 Untested Somatic Phase_I WXS none Illumina GAIIx 507dfb6e-244c-408c-a9e4-bce950ceadca 9dd8e0bf-af83-43fa-baf9-c445c02c1014 AGGCACCACACTGCAGGAGCT 0.542 39 1 TAF1L 138474 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 9 32630690 32630690 + Silent SNP A A G TCGA-DU-6393-01A-11D-1705-08 TCGA-DU-6393-10A-01D-1705-08 Untested Somatic Phase_I WXS none Illumina GAIIx 507dfb6e-244c-408c-a9e4-bce950ceadca 9dd8e0bf-af83-43fa-baf9-c445c02c1014 AGTTGAGTCAAATGCTCATCA 0.433 149 11 PCDH11Y 83259 hgsc.bcm.edu;broad.mit.edu 37 Y 5605958 5605958 + Missense_Mutation SNP C C T TCGA-DU-6393-01A-11D-1705-08 TCGA-DU-6393-10A-01D-1705-08 Untested Somatic Phase_I WXS none Illumina GAIIx 507dfb6e-244c-408c-a9e4-bce950ceadca 9dd8e0bf-af83-43fa-baf9-c445c02c1014 GGTGATTCCCCCATTATGGAA 0.373 56 5 CRAT 1384 broad.mit.edu;ucsc.edu 37 9 131857756 131857756 + Missense_Mutation SNP C C T TCGA-DU-6393-01A-11D-1705-08 TCGA-DU-6393-10A-01D-1705-08 Untested Somatic Phase_I WXS none Illumina GAIIx 507dfb6e-244c-408c-a9e4-bce950ceadca 9dd8e0bf-af83-43fa-baf9-c445c02c1014 GCCAGGCGGGCGGCGTTGGTC 0.667 15 19 CABIN1 23523 broad.mit.edu;ucsc.edu 37 22 24567940 24567940 + Missense_Mutation SNP C C T TCGA-DU-6393-01A-11D-1705-08 TCGA-DU-6393-10A-01D-1705-08 Untested Somatic Phase_I WXS none Illumina GAIIx 507dfb6e-244c-408c-a9e4-bce950ceadca 9dd8e0bf-af83-43fa-baf9-c445c02c1014 GAAGCTACCCCCAGCATGGCC 0.647 9 14 TRAV41 28640 broad.mit.edu;ucsc.edu 37 14 22789020 22789020 + RNA SNP A A G TCGA-DU-6393-01A-11D-1705-08 TCGA-DU-6393-10A-01D-1705-08 Untested Somatic Phase_I WXS none Illumina GAIIx 507dfb6e-244c-408c-a9e4-bce950ceadca 9dd8e0bf-af83-43fa-baf9-c445c02c1014 AAGAAGAAGCATGGAAGATTA 0.488 10 21 FNIP1 96459 broad.mit.edu;ucsc.edu 37 5 131013435 131013435 + Missense_Mutation SNP C C T TCGA-DU-6393-01A-11D-1705-08 TCGA-DU-6393-10A-01D-1705-08 Untested Somatic Phase_I WXS none Illumina GAIIx 507dfb6e-244c-408c-a9e4-bce950ceadca 9dd8e0bf-af83-43fa-baf9-c445c02c1014 TGAGTCTTTGCCAACATGTCC 0.383 34 61 QSER1 79832 broad.mit.edu;hgsc.bcm.edu 37 11 32955602 32955603 + In_Frame_Ins INS - - ATT TCGA-DU-6393-01A-11D-1705-08 TCGA-DU-6393-10A-01D-1705-08 Untested Somatic Phase_I WXS none Illumina GAIIx 507dfb6e-244c-408c-a9e4-bce950ceadca 9dd8e0bf-af83-43fa-baf9-c445c02c1014 TCTTCAAAACCATTACAACAAC 0.376 39 111 CIC 23152 broad.mit.edu;hgsc.bcm.edu 37 19 42796321 42796322 + Frame_Shift_Del DEL CT CT - TCGA-DU-6393-01A-11D-1705-08 TCGA-DU-6393-10A-01D-1705-08 Untested Somatic Phase_I WXS none Illumina GAIIx 507dfb6e-244c-408c-a9e4-bce950ceadca 9dd8e0bf-af83-43fa-baf9-c445c02c1014 CTGGACCCACCTCTCAGCCTCA 0.663 24 9