Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_file Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID ref_context gc_content t_alt_count t_ref_count FAT3 120114 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 11 92085432 92085432 + Missense_Mutation SNP G G A TCGA-DU-6395-01A-12D-1705-08 TCGA-DU-6395-10A-01D-1705-08 Untested Somatic Phase_I WXS none Illumina GAIIx 3189bd5c-ac35-4564-bbd1-744e17faf46d 71783be8-05e1-4cf5-9bf1-4f58ce54a273 TAATGCTACCGTGTATGAGAA 0.488 5 39 SYNE2 23224 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 14 64457244 64457244 + Missense_Mutation SNP C C G TCGA-DU-6395-01A-12D-1705-08 TCGA-DU-6395-10A-01D-1705-08 Untested Somatic Phase_I WXS none Illumina GAIIx 3189bd5c-ac35-4564-bbd1-744e17faf46d 71783be8-05e1-4cf5-9bf1-4f58ce54a273 GTTCTCACAACTGGGCTTCAG 0.378 29 131 NLGN2 57555 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 17 7318155 7318155 + Missense_Mutation SNP C C T TCGA-DU-6395-01A-12D-1705-08 TCGA-DU-6395-10A-01D-1705-08 Untested Somatic Phase_I WXS none Illumina GAIIx 3189bd5c-ac35-4564-bbd1-744e17faf46d 71783be8-05e1-4cf5-9bf1-4f58ce54a273 GATCCTCTCCCACCATTCAGA 0.612 13 50 TP53 7157 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 17 7578502 7578502 + Missense_Mutation SNP A A C TCGA-DU-6395-01A-12D-1705-08 TCGA-DU-6395-10A-01D-1705-08 Untested Somatic Phase_I WXS none Illumina GAIIx 3189bd5c-ac35-4564-bbd1-744e17faf46d 71783be8-05e1-4cf5-9bf1-4f58ce54a273 CCACAGCTGCACAGGGCAGGT 0.587 24 36 TP53 7157 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 17 7579362 7579362 + Missense_Mutation SNP A A C TCGA-DU-6395-01A-12D-1705-08 TCGA-DU-6395-10A-01D-1705-08 Untested Somatic Phase_I WXS none Illumina GAIIx 3189bd5c-ac35-4564-bbd1-744e17faf46d 71783be8-05e1-4cf5-9bf1-4f58ce54a273 CCCAGACGGAAACCGTAGCTG 0.612 23 41 TP53 7157 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 17 7579363 7579363 + Silent SNP A A C TCGA-DU-6395-01A-12D-1705-08 TCGA-DU-6395-10A-01D-1705-08 Untested Somatic Phase_I WXS none Illumina GAIIx 3189bd5c-ac35-4564-bbd1-744e17faf46d 71783be8-05e1-4cf5-9bf1-4f58ce54a273 CCAGACGGAAACCGTAGCTGC 0.617 23 39 DLGAP1 9229 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 18 3879577 3879577 + Silent SNP G G A TCGA-DU-6395-01A-12D-1705-08 TCGA-DU-6395-10A-01D-1705-08 Untested Somatic Phase_I WXS none Illumina GAIIx 3189bd5c-ac35-4564-bbd1-744e17faf46d 71783be8-05e1-4cf5-9bf1-4f58ce54a273 CCTTGCCCCCGTTGACGCTGC 0.711 35 94 CDH4 1002 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 20 60419868 60419868 + Missense_Mutation SNP G G A TCGA-DU-6395-01A-12D-1705-08 TCGA-DU-6395-10A-01D-1705-08 Untested Somatic Phase_I WXS none Illumina GAIIx 3189bd5c-ac35-4564-bbd1-744e17faf46d 71783be8-05e1-4cf5-9bf1-4f58ce54a273 GGAGGAGCACGCCTCTTACCA 0.672 10 20 N6AMT1 29104 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 21 30254531 30254531 + Missense_Mutation SNP T T C TCGA-DU-6395-01A-12D-1705-08 TCGA-DU-6395-10A-01D-1705-08 Untested Somatic Phase_I WXS none Illumina GAIIx 3189bd5c-ac35-4564-bbd1-744e17faf46d 71783be8-05e1-4cf5-9bf1-4f58ce54a273 GCGTGCTGTCTCTAGGGTACA 0.358 23 65 COQ10B 80219 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 2 198338608 198338608 + Missense_Mutation SNP T T C TCGA-DU-6395-01A-12D-1705-08 TCGA-DU-6395-10A-01D-1705-08 Untested Somatic Phase_I WXS none Illumina GAIIx 3189bd5c-ac35-4564-bbd1-744e17faf46d 71783be8-05e1-4cf5-9bf1-4f58ce54a273 GAAACAAATATACCTCGGGAG 0.413 38 48 IDH1 3417 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 2 209113112 209113112 + Missense_Mutation SNP C C T rs121913500 TCGA-DU-6395-01A-12D-1705-08 TCGA-DU-6395-10A-01D-1705-08 Untested Somatic Phase_I WXS none Illumina GAIIx 3189bd5c-ac35-4564-bbd1-744e17faf46d 71783be8-05e1-4cf5-9bf1-4f58ce54a273 ATAAGCATGACGACCTATGAT 0.393 34 54 TBC1D9 23158 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 4 141543729 141543729 + Missense_Mutation SNP G G A TCGA-DU-6395-01A-12D-1705-08 TCGA-DU-6395-10A-01D-1705-08 Untested Somatic Phase_I WXS none Illumina GAIIx 3189bd5c-ac35-4564-bbd1-744e17faf46d 71783be8-05e1-4cf5-9bf1-4f58ce54a273 CCGTTGTCCCGGGGCGAGGAG 0.637 22 89 DNAH8 1769 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 6 38893891 38893891 + Missense_Mutation SNP A A T TCGA-DU-6395-01A-12D-1705-08 TCGA-DU-6395-10A-01D-1705-08 Untested Somatic Phase_I WXS none Illumina GAIIx 3189bd5c-ac35-4564-bbd1-744e17faf46d 71783be8-05e1-4cf5-9bf1-4f58ce54a273 GAATGGCATTATTGTGACAAA 0.413 16 127 SHPRH 257218 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 6 146215310 146215310 + Silent SNP T T C TCGA-DU-6395-01A-12D-1705-08 TCGA-DU-6395-10A-01D-1705-08 Untested Somatic Phase_I WXS none Illumina GAIIx 3189bd5c-ac35-4564-bbd1-744e17faf46d 71783be8-05e1-4cf5-9bf1-4f58ce54a273 CACGACTGATTTGTGCAAATT 0.313 4 36 KIAA1324L 222223 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 7 86542420 86542420 + Missense_Mutation SNP G G C TCGA-DU-6395-01A-12D-1705-08 TCGA-DU-6395-10A-01D-1705-08 Untested Somatic Phase_I WXS none Illumina GAIIx 3189bd5c-ac35-4564-bbd1-744e17faf46d 71783be8-05e1-4cf5-9bf1-4f58ce54a273 CGACTGTTCAGAACCGAGGGC 0.517 12 61 DLC1 10395 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 8 12952306 12952306 + Missense_Mutation SNP G G A TCGA-DU-6395-01A-12D-1705-08 TCGA-DU-6395-10A-01D-1705-08 Untested Somatic Phase_I WXS none Illumina GAIIx 3189bd5c-ac35-4564-bbd1-744e17faf46d 71783be8-05e1-4cf5-9bf1-4f58ce54a273 GAGTTTGTTCGTCATTAGTGG 0.448 36 38 TEX15 56154 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 8 30702110 30702110 + Missense_Mutation SNP T T C TCGA-DU-6395-01A-12D-1705-08 TCGA-DU-6395-10A-01D-1705-08 Untested Somatic Phase_I WXS none Illumina GAIIx 3189bd5c-ac35-4564-bbd1-744e17faf46d 71783be8-05e1-4cf5-9bf1-4f58ce54a273 GCTTCTTTTGTAAACAGAATC 0.338 39 43 UBR5 51366 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 8 103359284 103359284 + Silent SNP T T C TCGA-DU-6395-01A-12D-1705-08 TCGA-DU-6395-10A-01D-1705-08 Untested Somatic Phase_I WXS none Illumina GAIIx 3189bd5c-ac35-4564-bbd1-744e17faf46d 71783be8-05e1-4cf5-9bf1-4f58ce54a273 CAGAGGATCCTCCACCACTTC 0.483 83 103 SCAI 286205 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 9 127734030 127734030 + Missense_Mutation SNP C C T TCGA-DU-6395-01A-12D-1705-08 TCGA-DU-6395-10A-01D-1705-08 Untested Somatic Phase_I WXS none Illumina GAIIx 3189bd5c-ac35-4564-bbd1-744e17faf46d 71783be8-05e1-4cf5-9bf1-4f58ce54a273 TTCCCATAGGCCTCTGCGCAT 0.428 57 100 DNAH8 1769 broad.mit.edu;ucsc.edu 37 6 38893890 38893890 + Silent SNP T T A TCGA-DU-6395-01A-12D-1705-08 TCGA-DU-6395-10A-01D-1705-08 Untested Somatic Phase_I WXS none Illumina GAIIx 3189bd5c-ac35-4564-bbd1-744e17faf46d 71783be8-05e1-4cf5-9bf1-4f58ce54a273 AGAATGGCATTATTGTGACAA 0.408 14 122 PDE4C 5143 broad.mit.edu;ucsc.edu 37 19 18329192 18329192 + Silent SNP G G A rs149723522 TCGA-DU-6395-01A-12D-1705-08 TCGA-DU-6395-10A-01D-1705-08 Untested Somatic Phase_I WXS none Illumina GAIIx 3189bd5c-ac35-4564-bbd1-744e17faf46d 71783be8-05e1-4cf5-9bf1-4f58ce54a273 GGGCCACGTCGGCGGCATGTA 0.637 47 81 IGLV5-37 28783 broad.mit.edu;ucsc.edu 37 22 22782218 22782218 + RNA SNP C C T TCGA-DU-6395-01A-12D-1705-08 TCGA-DU-6395-10A-01D-1705-08 Untested Somatic Phase_I WXS none Illumina GAIIx 3189bd5c-ac35-4564-bbd1-744e17faf46d 71783be8-05e1-4cf5-9bf1-4f58ce54a273 TGTACTACTACTCAGACTCAG 0.532 24 45 COL2A1 1280 broad.mit.edu;ucsc.edu 37 12 48370602 48370602 + Missense_Mutation SNP C C T TCGA-DU-6395-01A-12D-1705-08 TCGA-DU-6395-10A-01D-1705-08 Untested Somatic Phase_I WXS none Illumina GAIIx 3189bd5c-ac35-4564-bbd1-744e17faf46d 71783be8-05e1-4cf5-9bf1-4f58ce54a273 CACAGGAGGGCCGGGCAGACC 0.647 5 10 PDIK1L 149420 broad.mit.edu;ucsc.edu 37 1 26448766 26448766 + Missense_Mutation SNP G G A TCGA-DU-6395-01A-12D-1705-08 TCGA-DU-6395-10A-01D-1705-08 Untested Somatic Phase_I WXS none Illumina GAIIx 3189bd5c-ac35-4564-bbd1-744e17faf46d 71783be8-05e1-4cf5-9bf1-4f58ce54a273 TGACATCTTTGCTCTGGGGAT 0.423 29 65 CHRNA3 1136 broad.mit.edu;ucsc.edu 37 15 78893607 78893607 + Silent SNP A A G TCGA-DU-6395-01A-12D-1705-08 TCGA-DU-6395-10A-01D-1705-08 Untested Somatic Phase_I WXS none Illumina GAIIx 3189bd5c-ac35-4564-bbd1-744e17faf46d 71783be8-05e1-4cf5-9bf1-4f58ce54a273 CTTTGGCTTCATTTTGTGCTT 0.408 31 104 PPP3R2 5535 broad.mit.edu;ucsc.edu 37 9 104357209 104357209 + Missense_Mutation SNP A A C TCGA-DU-6395-01A-12D-1705-08 TCGA-DU-6395-10A-01D-1705-08 Untested Somatic Phase_I WXS none Illumina GAIIx 3189bd5c-ac35-4564-bbd1-744e17faf46d 71783be8-05e1-4cf5-9bf1-4f58ce54a273 CCCATTGTGGACATCTGGCAA 0.607 22 48 ATRX 546 broad.mit.edu;hgsc.bcm.edu 37 X 76938777 76938777 + Frame_Shift_Del DEL T T - TCGA-DU-6395-01A-12D-1705-08 TCGA-DU-6395-10A-01D-1705-08 Untested Somatic Phase_I WXS none Illumina GAIIx 3189bd5c-ac35-4564-bbd1-744e17faf46d 71783be8-05e1-4cf5-9bf1-4f58ce54a273 TCTTTACACGTGGGGATCTTC 0.378 147 42