Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_file Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID ref_context gc_content t_alt_count t_ref_count SLCO1B1 10599 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 12 21329781 21329781 + Missense_Mutation SNP T T C TCGA-DU-6401-01A-11D-1705-08 TCGA-DU-6401-10A-01D-1705-08 Untested Somatic Phase_I WXS none Illumina GAIIx 3a81f733-b3a3-4578-b925-a663612bc92c 194434ed-46e0-4ce9-9f8f-38593d2d09c7 ACTTGTTTAATTAATCAAATT 0.274 39 43 DYNC1H1 1778 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 14 102508452 102508452 + Missense_Mutation SNP A A G TCGA-DU-6401-01A-11D-1705-08 TCGA-DU-6401-10A-01D-1705-08 Untested Somatic Phase_I WXS none Illumina GAIIx 3a81f733-b3a3-4578-b925-a663612bc92c 194434ed-46e0-4ce9-9f8f-38593d2d09c7 GATCACTTCAATTGCAATCGG 0.537 12 18 ITGAD 3681 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 16 31419095 31419095 + Silent SNP C C T TCGA-DU-6401-01A-11D-1705-08 TCGA-DU-6401-10A-01D-1705-08 Untested Somatic Phase_I WXS none Illumina GAIIx 3a81f733-b3a3-4578-b925-a663612bc92c 194434ed-46e0-4ce9-9f8f-38593d2d09c7 AGGTGGGACACGCTTTCCAGG 0.617 17 21 TP53 7157 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 17 7574018 7574018 + Missense_Mutation SNP G G A TCGA-DU-6401-01A-11D-1705-08 TCGA-DU-6401-10A-01D-1705-08 Untested Somatic Phase_I WXS none Illumina GAIIx 3a81f733-b3a3-4578-b925-a663612bc92c 194434ed-46e0-4ce9-9f8f-38593d2d09c7 ATCTCGAAGCGCTCACGCCCA 0.522 20 8 TMC6 11322 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 17 76116777 76116777 + Missense_Mutation SNP C C T TCGA-DU-6401-01A-11D-1705-08 TCGA-DU-6401-10A-01D-1705-08 Untested Somatic Phase_I WXS none Illumina GAIIx 3a81f733-b3a3-4578-b925-a663612bc92c 194434ed-46e0-4ce9-9f8f-38593d2d09c7 AACATGAGGACGAAGTCCATC 0.637 29 109 CEACAM5 1048 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 19 42224879 42224879 + Silent SNP G G A TCGA-DU-6401-01A-11D-1705-08 TCGA-DU-6401-10A-01D-1705-08 Untested Somatic Phase_I WXS none Illumina GAIIx 3a81f733-b3a3-4578-b925-a663612bc92c 194434ed-46e0-4ce9-9f8f-38593d2d09c7 CCCCAGACTCGTCTTACCTTT 0.547 45 69 DHDDS 79947 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 1 26772898 26772898 + Missense_Mutation SNP G G A TCGA-DU-6401-01A-11D-1705-08 TCGA-DU-6401-10A-01D-1705-08 Untested Somatic Phase_I WXS none Illumina GAIIx 3a81f733-b3a3-4578-b925-a663612bc92c 194434ed-46e0-4ce9-9f8f-38593d2d09c7 TGCACAAGCTGTACAGGCCAC 0.517 46 92 CELSR1 9620 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 22 46929726 46929726 + Missense_Mutation SNP G G C TCGA-DU-6401-01A-11D-1705-08 TCGA-DU-6401-10A-01D-1705-08 Untested Somatic Phase_I WXS none Illumina GAIIx 3a81f733-b3a3-4578-b925-a663612bc92c 194434ed-46e0-4ce9-9f8f-38593d2d09c7 TGTTGGACTTGTTGGTGACAT 0.592 82 103 IDH1 3417 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 2 209113113 209113113 + Missense_Mutation SNP G G T rs121913499 TCGA-DU-6401-01A-11D-1705-08 TCGA-DU-6401-10A-01D-1705-08 Untested Somatic Phase_I WXS none Illumina GAIIx 3a81f733-b3a3-4578-b925-a663612bc92c 194434ed-46e0-4ce9-9f8f-38593d2d09c7 TAAGCATGACGACCTATGATG 0.398 28 53 SLIT2 9353 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 4 20490510 20490510 + Missense_Mutation SNP G G A TCGA-DU-6401-01A-11D-1705-08 TCGA-DU-6401-10A-01D-1705-08 Untested Somatic Phase_I WXS none Illumina GAIIx 3a81f733-b3a3-4578-b925-a663612bc92c 194434ed-46e0-4ce9-9f8f-38593d2d09c7 CTTCGCCAAAGGCCTCGGGTT 0.498 35 180 LAMA2 3908 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 6 129419503 129419503 + Silent SNP T T C TCGA-DU-6401-01A-11D-1705-08 TCGA-DU-6401-10A-01D-1705-08 Untested Somatic Phase_I WXS none Illumina GAIIx 3a81f733-b3a3-4578-b925-a663612bc92c 194434ed-46e0-4ce9-9f8f-38593d2d09c7 ATGCCAAAGATGATGAGGTCA 0.443 9 64 TNFAIP3 7128 hgsc.bcm.edu;broad.mit.edu 37 6 138199814 138199814 + Missense_Mutation SNP G G A TCGA-DU-6401-01A-11D-1705-08 TCGA-DU-6401-10A-01D-1705-08 Untested Somatic Phase_I WXS none Illumina GAIIx 3a81f733-b3a3-4578-b925-a663612bc92c 194434ed-46e0-4ce9-9f8f-38593d2d09c7 TCAGAGAGGCGGCAAAAGAAT 0.557 7 84 ENPP2 5168 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 8 120596283 120596283 + Silent SNP A A G TCGA-DU-6401-01A-11D-1705-08 TCGA-DU-6401-10A-01D-1705-08 Untested Somatic Phase_I WXS none Illumina GAIIx 3a81f733-b3a3-4578-b925-a663612bc92c 194434ed-46e0-4ce9-9f8f-38593d2d09c7 AAACATCCAAAGGTTTCCTAA 0.348 66 63 KCNT1 57582 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 9 138657002 138657002 + Missense_Mutation SNP G G T TCGA-DU-6401-01A-11D-1705-08 TCGA-DU-6401-10A-01D-1705-08 Untested Somatic Phase_I WXS none Illumina GAIIx 3a81f733-b3a3-4578-b925-a663612bc92c 194434ed-46e0-4ce9-9f8f-38593d2d09c7 ACCTTCTCATGGACTTCCTGA 0.642 11 98 CXorf23 0 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 X 19983583 19983583 + Missense_Mutation SNP G G T TCGA-DU-6401-01A-11D-1705-08 TCGA-DU-6401-10A-01D-1705-08 Untested Somatic Phase_I WXS none Illumina GAIIx 3a81f733-b3a3-4578-b925-a663612bc92c 194434ed-46e0-4ce9-9f8f-38593d2d09c7 AGCTTAGGACGTTTGTGACGA 0.458 41 36 HDAC6 10013 hgsc.bcm.edu;broad.mit.edu 37 X 48682452 48682452 + Missense_Mutation SNP A A G TCGA-DU-6401-01A-11D-1705-08 TCGA-DU-6401-10A-01D-1705-08 Untested Somatic Phase_I WXS none Illumina GAIIx 3a81f733-b3a3-4578-b925-a663612bc92c 194434ed-46e0-4ce9-9f8f-38593d2d09c7 AATCCAAGAGAATTGGGTGTG 0.592 6 50 GLUD2 2747 hgsc.bcm.edu;broad.mit.edu 37 X 120182836 120182836 + Missense_Mutation SNP G G A TCGA-DU-6401-01A-11D-1705-08 TCGA-DU-6401-10A-01D-1705-08 Untested Somatic Phase_I WXS none Illumina GAIIx 3a81f733-b3a3-4578-b925-a663612bc92c 194434ed-46e0-4ce9-9f8f-38593d2d09c7 TTGAATGCTGGAGGAGTGACA 0.418 22 214 ZFYVE26 23503 broad.mit.edu;ucsc.edu 37 14 68251787 68251787 + Missense_Mutation SNP C C T TCGA-DU-6401-01A-11D-1705-08 TCGA-DU-6401-10A-01D-1705-08 Untested Somatic Phase_I WXS none Illumina GAIIx 3a81f733-b3a3-4578-b925-a663612bc92c 194434ed-46e0-4ce9-9f8f-38593d2d09c7 AGGCTCAGAGCTCAAACTTTG 0.502 75 111 MAP2K3 5606 broad.mit.edu;ucsc.edu 37 17 21217496 21217496 + Missense_Mutation SNP C C T rs35755743 TCGA-DU-6401-01A-11D-1705-08 TCGA-DU-6401-10A-01D-1705-08 Untested Somatic Phase_I WXS none Illumina GAIIx 3a81f733-b3a3-4578-b925-a663612bc92c 194434ed-46e0-4ce9-9f8f-38593d2d09c7 ACCAAGAAGACGGACATTGCT 0.617 65 317 LPAR4 2846 broad.mit.edu;ucsc.edu 37 X 78010568 78010568 + Missense_Mutation SNP A A G TCGA-DU-6401-01A-11D-1705-08 TCGA-DU-6401-10A-01D-1705-08 Untested Somatic Phase_I WXS none Illumina GAIIx 3a81f733-b3a3-4578-b925-a663612bc92c 194434ed-46e0-4ce9-9f8f-38593d2d09c7 CTGTTTCCGCATGAAAATGAG 0.358 50 260 PTCD1 26024 broad.mit.edu;ucsc.edu 37 7 99026819 99026819 + Silent SNP G G A TCGA-DU-6401-01A-11D-1705-08 TCGA-DU-6401-10A-01D-1705-08 Untested Somatic Phase_I WXS none Illumina GAIIx 3a81f733-b3a3-4578-b925-a663612bc92c 194434ed-46e0-4ce9-9f8f-38593d2d09c7 GCCCTTTGTGGATGATTTCCT 0.557 10 92 XPO6 23214 broad.mit.edu;ucsc.edu 37 16 28137080 28137080 + Missense_Mutation SNP G G A TCGA-DU-6401-01A-11D-1705-08 TCGA-DU-6401-10A-01D-1705-08 Untested Somatic Phase_I WXS none Illumina GAIIx 3a81f733-b3a3-4578-b925-a663612bc92c 194434ed-46e0-4ce9-9f8f-38593d2d09c7 TCGGCCAGGCGGCCCACGGCC 0.582 29 117 ESCO2 157570 broad.mit.edu;hgsc.bcm.edu 37 8 27634263 27634266 + Frame_Shift_Del DEL TAAG TAAG - TCGA-DU-6401-01A-11D-1705-08 TCGA-DU-6401-10A-01D-1705-08 Untested Somatic Phase_I WXS none Illumina GAIIx 3a81f733-b3a3-4578-b925-a663612bc92c 194434ed-46e0-4ce9-9f8f-38593d2d09c7 GTTTAACTGCTAAGTATCAACCAA 0.353 23 38 ATRX 546 broad.mit.edu;hgsc.bcm.edu 37 X 76939673 76939674 + Frame_Shift_Ins INS - - T TCGA-DU-6401-01A-11D-1705-08 TCGA-DU-6401-10A-01D-1705-08 Untested Somatic Phase_I WXS none Illumina GAIIx 3a81f733-b3a3-4578-b925-a663612bc92c 194434ed-46e0-4ce9-9f8f-38593d2d09c7 GTCTCAATCAGTTTTTTTGCCT 0.366 52 94