Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_file Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID ref_context gc_content t_alt_count t_ref_count ARMC3 219681 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 10 23287189 23287189 + Missense_Mutation SNP C C A TCGA-DU-6410-01A-11D-1893-08 TCGA-DU-6410-10A-01D-1893-08 Untested Somatic Phase_I WXS none Illumina GAIIx f978b356-f9ee-415d-b39c-a8ef1b221734 2b140fc8-fb90-4bf3-93e2-ce81a83a703a CATGCAGGAGCCCCTGCGCCT 0.493 12 14 APBB1IP 54518 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 10 26802585 26802585 + Missense_Mutation SNP C C T TCGA-DU-6410-01A-11D-1893-08 TCGA-DU-6410-10A-01D-1893-08 Untested Somatic Phase_I WXS none Illumina GAIIx f978b356-f9ee-415d-b39c-a8ef1b221734 2b140fc8-fb90-4bf3-93e2-ce81a83a703a TTTAAAAACCCCCAGGTAAGA 0.348 67 94 ANO5 203859 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 11 22271916 22271916 + Splice_Site SNP A A T TCGA-DU-6410-01A-11D-1893-08 TCGA-DU-6410-10A-01D-1893-08 Untested Somatic Phase_I WXS none Illumina GAIIx f978b356-f9ee-415d-b39c-a8ef1b221734 2b140fc8-fb90-4bf3-93e2-ce81a83a703a TAACACAAGCAGGTAAGTGCA 0.363 20 32 MARK2 2011 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 11 63667348 63667348 + Silent SNP A A G TCGA-DU-6410-01A-11D-1893-08 TCGA-DU-6410-10A-01D-1893-08 Untested Somatic Phase_I WXS none Illumina GAIIx f978b356-f9ee-415d-b39c-a8ef1b221734 2b140fc8-fb90-4bf3-93e2-ce81a83a703a CCTCCCAGGCAGAAAACCTGC 0.498 166 191 SCYL1 57410 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 11 65303494 65303494 + Missense_Mutation SNP C C T TCGA-DU-6410-01A-11D-1893-08 TCGA-DU-6410-10A-01D-1893-08 Untested Somatic Phase_I WXS none Illumina GAIIx f978b356-f9ee-415d-b39c-a8ef1b221734 2b140fc8-fb90-4bf3-93e2-ce81a83a703a TCCCGGGTTGCGGGTGTCCTG 0.597 31 55 PTPRB 5787 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 12 70980859 70980859 + Nonsense_Mutation SNP G G A TCGA-DU-6410-01A-11D-1893-08 TCGA-DU-6410-10A-01D-1893-08 Untested Somatic Phase_I WXS none Illumina GAIIx f978b356-f9ee-415d-b39c-a8ef1b221734 2b140fc8-fb90-4bf3-93e2-ce81a83a703a ATGTATTTTCGTCCAGGCACC 0.378 58 60 MYH4 4622 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 17 10350515 10350515 + Missense_Mutation SNP C C A TCGA-DU-6410-01A-11D-1893-08 TCGA-DU-6410-10A-01D-1893-08 Untested Somatic Phase_I WXS none Illumina GAIIx f978b356-f9ee-415d-b39c-a8ef1b221734 2b140fc8-fb90-4bf3-93e2-ce81a83a703a ATGGCATCATCCAAATGTAGC 0.453 27 47 UTP18 51096 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 17 49371388 49371388 + Missense_Mutation SNP G G A TCGA-DU-6410-01A-11D-1893-08 TCGA-DU-6410-10A-01D-1893-08 Untested Somatic Phase_I WXS none Illumina GAIIx f978b356-f9ee-415d-b39c-a8ef1b221734 2b140fc8-fb90-4bf3-93e2-ce81a83a703a AATGAAAAGGGCAAGGCCCTG 0.333 28 34 RNF213 57674 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 17 78320934 78320934 + Silent SNP G G A rs141391616 TCGA-DU-6410-01A-11D-1893-08 TCGA-DU-6410-10A-01D-1893-08 Untested Somatic Phase_I WXS none Illumina GAIIx f978b356-f9ee-415d-b39c-a8ef1b221734 2b140fc8-fb90-4bf3-93e2-ce81a83a703a GGTACTTTGCGTCCTTTGCCA 0.547 30 23 SOGA2 23255 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 18 8793017 8793017 + Missense_Mutation SNP C C T TCGA-DU-6410-01A-11D-1893-08 TCGA-DU-6410-10A-01D-1893-08 Untested Somatic Phase_I WXS none Illumina GAIIx f978b356-f9ee-415d-b39c-a8ef1b221734 2b140fc8-fb90-4bf3-93e2-ce81a83a703a CCCCGTTTTACCTGAGCAGAG 0.527 122 141 ZNF71 58491 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 19 57133636 57133636 + Silent SNP G G A TCGA-DU-6410-01A-11D-1893-08 TCGA-DU-6410-10A-01D-1893-08 Untested Somatic Phase_I WXS none Illumina GAIIx f978b356-f9ee-415d-b39c-a8ef1b221734 2b140fc8-fb90-4bf3-93e2-ce81a83a703a AGCCCTACGTGTGCGGCGAGT 0.642 32 45 UBE4B 10277 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 1 10182079 10182079 + Missense_Mutation SNP G G A TCGA-DU-6410-01A-11D-1893-08 TCGA-DU-6410-10A-01D-1893-08 Untested Somatic Phase_I WXS none Illumina GAIIx f978b356-f9ee-415d-b39c-a8ef1b221734 2b140fc8-fb90-4bf3-93e2-ce81a83a703a CTCCCATATGGCTTCATTCAG 0.493 13 82 EXTL1 2134 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 1 26361731 26361731 + Missense_Mutation SNP T T C TCGA-DU-6410-01A-11D-1893-08 TCGA-DU-6410-10A-01D-1893-08 Untested Somatic Phase_I WXS none Illumina GAIIx f978b356-f9ee-415d-b39c-a8ef1b221734 2b140fc8-fb90-4bf3-93e2-ce81a83a703a AGCGGCAGCGTTCGGCCACAT 0.642 49 7 ARID1A 8289 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 1 27101342 27101342 + Nonsense_Mutation SNP G G T TCGA-DU-6410-01A-11D-1893-08 TCGA-DU-6410-10A-01D-1893-08 Untested Somatic Phase_I WXS none Illumina GAIIx f978b356-f9ee-415d-b39c-a8ef1b221734 2b140fc8-fb90-4bf3-93e2-ce81a83a703a GGCCAACCACGAAGGCTCGTG 0.642 45 7 CDC20 991 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 1 43824985 43824985 + Silent SNP G G A TCGA-DU-6410-01A-11D-1893-08 TCGA-DU-6410-10A-01D-1893-08 Untested Somatic Phase_I WXS none Illumina GAIIx f978b356-f9ee-415d-b39c-a8ef1b221734 2b140fc8-fb90-4bf3-93e2-ce81a83a703a GCAAAGCCAAGGAAGCCGCAG 0.677 5 38 SNX7 51375 hgsc.bcm.edu;ucsc.edu 37 1 99156680 99156680 + Missense_Mutation SNP A A G TCGA-DU-6410-01A-11D-1893-08 TCGA-DU-6410-10A-01D-1893-08 Untested Somatic Phase_I WXS none Illumina GAIIx f978b356-f9ee-415d-b39c-a8ef1b221734 2b140fc8-fb90-4bf3-93e2-ce81a83a703a AGGAGACGATATCAAGATTTC 0.363 3 26 INTS3 65123 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 1 153745465 153745465 + Missense_Mutation SNP C C T TCGA-DU-6410-01A-11D-1893-08 TCGA-DU-6410-10A-01D-1893-08 Untested Somatic Phase_I WXS none Illumina GAIIx f978b356-f9ee-415d-b39c-a8ef1b221734 2b140fc8-fb90-4bf3-93e2-ce81a83a703a ACCCAAGAGCCGGCGAAAAGC 0.557 62 106 ENTPD6 955 hgsc.bcm.edu;broad.mit.edu 37 20 25201921 25201921 + Missense_Mutation SNP G G C TCGA-DU-6410-01A-11D-1893-08 TCGA-DU-6410-10A-01D-1893-08 Untested Somatic Phase_I WXS none Illumina GAIIx f978b356-f9ee-415d-b39c-a8ef1b221734 2b140fc8-fb90-4bf3-93e2-ce81a83a703a TTTCAAAGGAGAGTGGGAACA 0.517 6 119 DIP2A 23181 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 21 47952057 47952057 + Silent SNP G G T TCGA-DU-6410-01A-11D-1893-08 TCGA-DU-6410-10A-01D-1893-08 Untested Somatic Phase_I WXS none Illumina GAIIx f978b356-f9ee-415d-b39c-a8ef1b221734 2b140fc8-fb90-4bf3-93e2-ce81a83a703a TCGTGTTTCCGAATAGTGACC 0.378 18 32 DDX17 10521 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 22 38890947 38890947 + Missense_Mutation SNP T T C TCGA-DU-6410-01A-11D-1893-08 TCGA-DU-6410-10A-01D-1893-08 Untested Somatic Phase_I WXS none Illumina GAIIx f978b356-f9ee-415d-b39c-a8ef1b221734 2b140fc8-fb90-4bf3-93e2-ce81a83a703a TCAAGCATTCTGTCAGCTTCG 0.428 53 95 EDAR 10913 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 2 109539871 109539871 + Missense_Mutation SNP C C T TCGA-DU-6410-01A-11D-1893-08 TCGA-DU-6410-10A-01D-1893-08 Untested Somatic Phase_I WXS none Illumina GAIIx f978b356-f9ee-415d-b39c-a8ef1b221734 2b140fc8-fb90-4bf3-93e2-ce81a83a703a GCAGACCATGCCATAGATGTT 0.542 54 85 IDH1 3417 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 2 209113112 209113112 + Missense_Mutation SNP C C T rs121913500 TCGA-DU-6410-01A-11D-1893-08 TCGA-DU-6410-10A-01D-1893-08 Untested Somatic Phase_I WXS none Illumina GAIIx f978b356-f9ee-415d-b39c-a8ef1b221734 2b140fc8-fb90-4bf3-93e2-ce81a83a703a ATAAGCATGACGACCTATGAT 0.393 27 44 EPHA3 2042 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 3 89498454 89498454 + Missense_Mutation SNP G G T TCGA-DU-6410-01A-11D-1893-08 TCGA-DU-6410-10A-01D-1893-08 Untested Somatic Phase_I WXS none Illumina GAIIx f978b356-f9ee-415d-b39c-a8ef1b221734 2b140fc8-fb90-4bf3-93e2-ce81a83a703a GATGTATGGAGTTATGGGATT 0.448 54 72 HHLA2 11148 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 3 108074123 108074123 + Missense_Mutation SNP T T C TCGA-DU-6410-01A-11D-1893-08 TCGA-DU-6410-10A-01D-1893-08 Untested Somatic Phase_I WXS none Illumina GAIIx f978b356-f9ee-415d-b39c-a8ef1b221734 2b140fc8-fb90-4bf3-93e2-ce81a83a703a GGATTCTTTTTCTATTAACAG 0.388 12 80 MUC4 4585 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 3 195515511 195515511 + Silent SNP G G A TCGA-DU-6410-01A-11D-1893-08 TCGA-DU-6410-10A-01D-1893-08 Untested Somatic Phase_I WXS none Illumina GAIIx f978b356-f9ee-415d-b39c-a8ef1b221734 2b140fc8-fb90-4bf3-93e2-ce81a83a703a AGGAAGCGTAGGTGACAGGAA 0.572 10 24 ALB 213 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 4 74280861 74280861 + Missense_Mutation SNP C C T rs141343001 TCGA-DU-6410-01A-11D-1893-08 TCGA-DU-6410-10A-01D-1893-08 Untested Somatic Phase_I WXS none Illumina GAIIx f978b356-f9ee-415d-b39c-a8ef1b221734 2b140fc8-fb90-4bf3-93e2-ce81a83a703a CGCTGCAGATCCTCATGAATG 0.398 44 7 MATR3 9782 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 5 138643853 138643853 + Missense_Mutation SNP A A G TCGA-DU-6410-01A-11D-1893-08 TCGA-DU-6410-10A-01D-1893-08 Untested Somatic Phase_I WXS none Illumina GAIIx f978b356-f9ee-415d-b39c-a8ef1b221734 2b140fc8-fb90-4bf3-93e2-ce81a83a703a GACAGTGAGTATGAGAGAATG 0.418 23 64 EHMT2 10919 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 6 31856769 31856769 + Missense_Mutation SNP C C T TCGA-DU-6410-01A-11D-1893-08 TCGA-DU-6410-10A-01D-1893-08 Untested Somatic Phase_I WXS none Illumina GAIIx f978b356-f9ee-415d-b39c-a8ef1b221734 2b140fc8-fb90-4bf3-93e2-ce81a83a703a GGAGAGGGTCCCCTCGCTGGG 0.632 14 15 MTO1 25821 hgsc.bcm.edu;broad.mit.edu 37 6 74191908 74191908 + Missense_Mutation SNP G G A TCGA-DU-6410-01A-11D-1893-08 TCGA-DU-6410-10A-01D-1893-08 Untested Somatic Phase_I WXS none Illumina GAIIx f978b356-f9ee-415d-b39c-a8ef1b221734 2b140fc8-fb90-4bf3-93e2-ce81a83a703a TTTACCAGCCGAGTAGAGTTC 0.527 7 79 AK9 221264 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 6 109854548 109854548 + Missense_Mutation SNP C C T TCGA-DU-6410-01A-11D-1893-08 TCGA-DU-6410-10A-01D-1893-08 Untested Somatic Phase_I WXS none Illumina GAIIx f978b356-f9ee-415d-b39c-a8ef1b221734 2b140fc8-fb90-4bf3-93e2-ce81a83a703a AGGAAGGAGGCGATCAAAAAT 0.383 36 42 KIAA1244 57221 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 6 138657616 138657616 + Missense_Mutation SNP T T C TCGA-DU-6410-01A-11D-1893-08 TCGA-DU-6410-10A-01D-1893-08 Untested Somatic Phase_I WXS none Illumina GAIIx f978b356-f9ee-415d-b39c-a8ef1b221734 2b140fc8-fb90-4bf3-93e2-ce81a83a703a TATGACATCATTGTGTAGCCG 0.552 39 42 CASD1 64921 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 7 94163000 94163000 + Missense_Mutation SNP A A G TCGA-DU-6410-01A-11D-1893-08 TCGA-DU-6410-10A-01D-1893-08 Untested Somatic Phase_I WXS none Illumina GAIIx f978b356-f9ee-415d-b39c-a8ef1b221734 2b140fc8-fb90-4bf3-93e2-ce81a83a703a GTGGTCCATCAAGATTCACAA 0.294 27 63 KLHL38 340359 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 8 124664667 124664667 + Missense_Mutation SNP G G A TCGA-DU-6410-01A-11D-1893-08 TCGA-DU-6410-10A-01D-1893-08 Untested Somatic Phase_I WXS none Illumina GAIIx f978b356-f9ee-415d-b39c-a8ef1b221734 2b140fc8-fb90-4bf3-93e2-ce81a83a703a GGCCGATGCGGCCACCTCTGG 0.567 64 73 FUBP3 8939 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 9 133506050 133506050 + Missense_Mutation SNP G G A TCGA-DU-6410-01A-11D-1893-08 TCGA-DU-6410-10A-01D-1893-08 Untested Somatic Phase_I WXS none Illumina GAIIx f978b356-f9ee-415d-b39c-a8ef1b221734 2b140fc8-fb90-4bf3-93e2-ce81a83a703a CCAGCAGTCAGGGGCGCACGT 0.612 38 68 USP9X 8239 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 X 41057788 41057788 + Missense_Mutation SNP T T C TCGA-DU-6410-01A-11D-1893-08 TCGA-DU-6410-10A-01D-1893-08 Untested Somatic Phase_I WXS none Illumina GAIIx f978b356-f9ee-415d-b39c-a8ef1b221734 2b140fc8-fb90-4bf3-93e2-ce81a83a703a TAGGAATTAATTGATGATTTC 0.318 23 2 CFTR 1080 broad.mit.edu;ucsc.edu 37 7 117304899 117304899 + Missense_Mutation SNP C C T rs115147093 by1000genomes TCGA-DU-6410-01A-11D-1893-08 TCGA-DU-6410-10A-01D-1893-08 Untested Somatic Phase_I WXS none Illumina GAIIx f978b356-f9ee-415d-b39c-a8ef1b221734 2b140fc8-fb90-4bf3-93e2-ce81a83a703a GAACCCAGTGCTCATTTGGAT 0.453 67 235 KRT25 147183 broad.mit.edu;ucsc.edu 37 17 38906790 38906790 + Silent SNP C C T TCGA-DU-6410-01A-11D-1893-08 TCGA-DU-6410-10A-01D-1893-08 Untested Somatic Phase_I WXS none Illumina GAIIx f978b356-f9ee-415d-b39c-a8ef1b221734 2b140fc8-fb90-4bf3-93e2-ce81a83a703a CCTGGATCTGCGCCAGCTGCG 0.562 117 159 OR4K17 390436 broad.mit.edu;ucsc.edu 37 14 20586367 20586367 + Missense_Mutation SNP C C T TCGA-DU-6410-01A-11D-1893-08 TCGA-DU-6410-10A-01D-1893-08 Untested Somatic Phase_I WXS none Illumina GAIIx f978b356-f9ee-415d-b39c-a8ef1b221734 2b140fc8-fb90-4bf3-93e2-ce81a83a703a ATCTAAAGCCCGTTCCACTTT 0.438 49 54 RBPJ 3516 broad.mit.edu;ucsc.edu 37 4 26422326 26422326 + Nonsense_Mutation SNP C C T TCGA-DU-6410-01A-11D-1893-08 TCGA-DU-6410-10A-01D-1893-08 Untested Somatic Phase_I WXS none Illumina GAIIx f978b356-f9ee-415d-b39c-a8ef1b221734 2b140fc8-fb90-4bf3-93e2-ce81a83a703a CAAAAAGAAGCAGTCATTGAA 0.363 25 2 HK1 3098 broad.mit.edu;ucsc.edu 37 10 71136763 71136763 + Missense_Mutation SNP G G A TCGA-DU-6410-01A-11D-1893-08 TCGA-DU-6410-10A-01D-1893-08 Untested Somatic Phase_I WXS none Illumina GAIIx f978b356-f9ee-415d-b39c-a8ef1b221734 2b140fc8-fb90-4bf3-93e2-ce81a83a703a GGCCAAGGAGGGCCTCTTATT 0.537 65 77 USP7 7874 broad.mit.edu;ucsc.edu 37 16 9000424 9000424 + Silent SNP C C T TCGA-DU-6410-01A-11D-1893-08 TCGA-DU-6410-10A-01D-1893-08 Untested Somatic Phase_I WXS none Illumina GAIIx f978b356-f9ee-415d-b39c-a8ef1b221734 2b140fc8-fb90-4bf3-93e2-ce81a83a703a GTGGTAACTGCTCTGGGAATT 0.318 37 37 TARS 6897 broad.mit.edu;ucsc.edu 37 5 33445453 33445453 + Silent SNP A A G TCGA-DU-6410-01A-11D-1893-08 TCGA-DU-6410-10A-01D-1893-08 Untested Somatic Phase_I WXS none Illumina GAIIx f978b356-f9ee-415d-b39c-a8ef1b221734 2b140fc8-fb90-4bf3-93e2-ce81a83a703a AAGAGAAGCAAAAGGAAGGAG 0.423 3 16 IGHV3-30 28439 broad.mit.edu;ucsc.edu 37 14 106791017 106791017 + RNA SNP A A G TCGA-DU-6410-01A-11D-1893-08 TCGA-DU-6410-10A-01D-1893-08 Untested Somatic Phase_I WXS none Illumina GAIIx f978b356-f9ee-415d-b39c-a8ef1b221734 2b140fc8-fb90-4bf3-93e2-ce81a83a703a TCGCACAGTAATACACAGCCG 0.567 157 1166 TATDN2 9797 broad.mit.edu;hgsc.bcm.edu 37 3 10291133 10291135 + In_Frame_Del DEL CTT CTT - rs148201381 TCGA-DU-6410-01A-11D-1893-08 TCGA-DU-6410-10A-01D-1893-08 Untested Somatic Phase_I WXS none Illumina GAIIx f978b356-f9ee-415d-b39c-a8ef1b221734 2b140fc8-fb90-4bf3-93e2-ce81a83a703a CCTCCTCCTCCTTCTCCCCACAT 0.631 61 332