Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_file Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID ref_context gc_content t_alt_count t_ref_count OR4X1 390113 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 11 48285724 48285724 + Missense_Mutation SNP C C A TCGA-DU-6542-01A-11D-1893-08 TCGA-DU-6542-10A-01D-1893-08 Untested Somatic Phase_I WXS none Illumina GAIIx 96dd5230-96ed-40d9-a861-339fdb8a9842 d6e9d687-e7e6-475b-8290-ddea4d015a92 CCCTCCATTTCTTTGGTGGCA 0.498 33 58 OR5M9 390162 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 11 56230846 56230846 + Missense_Mutation SNP G G C TCGA-DU-6542-01A-11D-1893-08 TCGA-DU-6542-10A-01D-1893-08 Untested Somatic Phase_I WXS none Illumina GAIIx 96dd5230-96ed-40d9-a861-339fdb8a9842 d6e9d687-e7e6-475b-8290-ddea4d015a92 CCCCAGGAGAGTAAATTCTGT 0.418 9 42 TP53 7157 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 17 7578190 7578190 + Missense_Mutation SNP T T C rs121912666 TCGA-DU-6542-01A-11D-1893-08 TCGA-DU-6542-10A-01D-1893-08 Untested Somatic Phase_I WXS none Illumina GAIIx 96dd5230-96ed-40d9-a861-339fdb8a9842 d6e9d687-e7e6-475b-8290-ddea4d015a92 AGGCGGCTCATAGGGCACCAC 0.557 28 4 ABCC3 8714 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 17 48733300 48733300 + Silent SNP C C T TCGA-DU-6542-01A-11D-1893-08 TCGA-DU-6542-10A-01D-1893-08 Untested Somatic Phase_I WXS none Illumina GAIIx 96dd5230-96ed-40d9-a861-339fdb8a9842 d6e9d687-e7e6-475b-8290-ddea4d015a92 CCCTGCCCTGCTACTTGCTCT 0.597 9 65 APPBP2 10513 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 17 58556547 58556547 + Missense_Mutation SNP C C G TCGA-DU-6542-01A-11D-1893-08 TCGA-DU-6542-10A-01D-1893-08 Untested Somatic Phase_I WXS none Illumina GAIIx 96dd5230-96ed-40d9-a861-339fdb8a9842 d6e9d687-e7e6-475b-8290-ddea4d015a92 AATGAAGCATCTCATCGTGTA 0.383 33 59 PLA2G2D 26279 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 1 20442002 20442002 + Missense_Mutation SNP C C T TCGA-DU-6542-01A-11D-1893-08 TCGA-DU-6542-10A-01D-1893-08 Untested Somatic Phase_I WXS none Illumina GAIIx 96dd5230-96ed-40d9-a861-339fdb8a9842 d6e9d687-e7e6-475b-8290-ddea4d015a92 GTACTCACAGCAGTGGATGTT 0.547 33 48 INADL 10207 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 1 62586854 62586854 + Splice_Site SNP G G A TCGA-DU-6542-01A-11D-1893-08 TCGA-DU-6542-10A-01D-1893-08 Untested Somatic Phase_I WXS none Illumina GAIIx 96dd5230-96ed-40d9-a861-339fdb8a9842 d6e9d687-e7e6-475b-8290-ddea4d015a92 TTCTTTCAGGGTAGTCAGCAG 0.493 50 87 TNN 63923 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 1 175046809 175046809 + Silent SNP C C A TCGA-DU-6542-01A-11D-1893-08 TCGA-DU-6542-10A-01D-1893-08 Untested Somatic Phase_I WXS none Illumina GAIIx 96dd5230-96ed-40d9-a861-339fdb8a9842 d6e9d687-e7e6-475b-8290-ddea4d015a92 AGAACATCATCTTCAGGCACA 0.607 28 37 HMCN1 83872 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 1 186045567 186045567 + Silent SNP A A T TCGA-DU-6542-01A-11D-1893-08 TCGA-DU-6542-10A-01D-1893-08 Untested Somatic Phase_I WXS none Illumina GAIIx 96dd5230-96ed-40d9-a861-339fdb8a9842 d6e9d687-e7e6-475b-8290-ddea4d015a92 TAGTTCCTCCAAGTTTTCAGA 0.378 13 22 CCDC173 129881 hgsc.bcm.edu;broad.mit.edu 37 2 170537668 170537668 + Missense_Mutation SNP G G C TCGA-DU-6542-01A-11D-1893-08 TCGA-DU-6542-10A-01D-1893-08 Untested Somatic Phase_I WXS none Illumina GAIIx 96dd5230-96ed-40d9-a861-339fdb8a9842 d6e9d687-e7e6-475b-8290-ddea4d015a92 TGGAATTATGGTGACCTGCTG 0.388 40 52 TTN 7273 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 2 179422678 179422678 + Missense_Mutation SNP G G C TCGA-DU-6542-01A-11D-1893-08 TCGA-DU-6542-10A-01D-1893-08 Untested Somatic Phase_I WXS none Illumina GAIIx 96dd5230-96ed-40d9-a861-339fdb8a9842 d6e9d687-e7e6-475b-8290-ddea4d015a92 GGCCTGTCTAGCACAACAATG 0.448 21 260 IDH1 3417 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 2 209113112 209113112 + Missense_Mutation SNP C C T rs121913500 TCGA-DU-6542-01A-11D-1893-08 TCGA-DU-6542-10A-01D-1893-08 Untested Somatic Phase_I WXS none Illumina GAIIx 96dd5230-96ed-40d9-a861-339fdb8a9842 d6e9d687-e7e6-475b-8290-ddea4d015a92 ATAAGCATGACGACCTATGAT 0.393 20 50 UGT1A6 54578 hgsc.bcm.edu;broad.mit.edu 37 2 234602346 234602346 + Silent SNP C C T TCGA-DU-6542-01A-11D-1893-08 TCGA-DU-6542-10A-01D-1893-08 Untested Somatic Phase_I WXS none Illumina GAIIx 96dd5230-96ed-40d9-a861-339fdb8a9842 d6e9d687-e7e6-475b-8290-ddea4d015a92 ATGAAGAACTCGCATCAGCTG 0.393 13 181 SNED1 25992 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 2 242003028 242003028 + Missense_Mutation SNP C C T TCGA-DU-6542-01A-11D-1893-08 TCGA-DU-6542-10A-01D-1893-08 Untested Somatic Phase_I WXS none Illumina GAIIx 96dd5230-96ed-40d9-a861-339fdb8a9842 d6e9d687-e7e6-475b-8290-ddea4d015a92 CGAGCTCACCCGTGCAGAAAT 0.622 5 13 WDR52 55779 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 3 113098287 113098287 + Missense_Mutation SNP A A G TCGA-DU-6542-01A-11D-1893-08 TCGA-DU-6542-10A-01D-1893-08 Untested Somatic Phase_I WXS none Illumina GAIIx 96dd5230-96ed-40d9-a861-339fdb8a9842 d6e9d687-e7e6-475b-8290-ddea4d015a92 tcctcctGAAATTCTTTTTCT 0.453 31 57 VEGFC 7424 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 4 177605151 177605151 + Missense_Mutation SNP G G C TCGA-DU-6542-01A-11D-1893-08 TCGA-DU-6542-10A-01D-1893-08 Untested Somatic Phase_I WXS none Illumina GAIIx 96dd5230-96ed-40d9-a861-339fdb8a9842 d6e9d687-e7e6-475b-8290-ddea4d015a92 GAAAATCCTGGCTCACAAGCC 0.418 51 56 VEGFC 7424 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 4 177605165 177605165 + Missense_Mutation SNP T T C TCGA-DU-6542-01A-11D-1893-08 TCGA-DU-6542-10A-01D-1893-08 Untested Somatic Phase_I WXS none Illumina GAIIx 96dd5230-96ed-40d9-a861-339fdb8a9842 d6e9d687-e7e6-475b-8290-ddea4d015a92 ACAAGCCTTCTGGCGGTTCGT 0.418 51 59 DDX43 55510 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 6 74117789 74117789 + Missense_Mutation SNP A A G TCGA-DU-6542-01A-11D-1893-08 TCGA-DU-6542-10A-01D-1893-08 Untested Somatic Phase_I WXS none Illumina GAIIx 96dd5230-96ed-40d9-a861-339fdb8a9842 d6e9d687-e7e6-475b-8290-ddea4d015a92 TCTGCAAATGAGTAACTTCGT 0.388 26 12 ABCF2 10061 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 7 150911221 150911221 + Silent SNP G G A TCGA-DU-6542-01A-11D-1893-08 TCGA-DU-6542-10A-01D-1893-08 Untested Somatic Phase_I WXS none Illumina GAIIx 96dd5230-96ed-40d9-a861-339fdb8a9842 d6e9d687-e7e6-475b-8290-ddea4d015a92 AAGCCAGGATGTCTCCAGGCC 0.542 26 46 PTPRD 5789 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 9 8376664 8376664 + Silent SNP C C T TCGA-DU-6542-01A-11D-1893-08 TCGA-DU-6542-10A-01D-1893-08 Untested Somatic Phase_I WXS none Illumina GAIIx 96dd5230-96ed-40d9-a861-339fdb8a9842 d6e9d687-e7e6-475b-8290-ddea4d015a92 TATCAAGCAGCGTTACTTGAA 0.453 16 46 P2RY6 5031 broad.mit.edu;ucsc.edu 37 11 73007739 73007739 + Missense_Mutation SNP C C T TCGA-DU-6542-01A-11D-1893-08 TCGA-DU-6542-10A-01D-1893-08 Untested Somatic Phase_I WXS none Illumina GAIIx 96dd5230-96ed-40d9-a861-339fdb8a9842 d6e9d687-e7e6-475b-8290-ddea4d015a92 CGGGCCCTGACCCGCACGGCC 0.612 53 193 TRIM48 79097 broad.mit.edu;ucsc.edu 37 11 55035824 55035824 + Splice_Site SNP A A G TCGA-DU-6542-01A-11D-1893-08 TCGA-DU-6542-10A-01D-1893-08 Untested Somatic Phase_I WXS none Illumina GAIIx 96dd5230-96ed-40d9-a861-339fdb8a9842 d6e9d687-e7e6-475b-8290-ddea4d015a92 TTTTTTTTACAGGCTTTTGGA 0.343 31 52 CELSR3 1951 broad.mit.edu;ucsc.edu 37 3 48694173 48694173 + Missense_Mutation SNP G G A TCGA-DU-6542-01A-11D-1893-08 TCGA-DU-6542-10A-01D-1893-08 Untested Somatic Phase_I WXS none Illumina GAIIx 96dd5230-96ed-40d9-a861-339fdb8a9842 d6e9d687-e7e6-475b-8290-ddea4d015a92 CCTCCCTCGCGCCGCGCGCAG 0.726 5 7 TRPV5 56302 broad.mit.edu;ucsc.edu 37 7 142609711 142609711 + Silent SNP G G A TCGA-DU-6542-01A-11D-1893-08 TCGA-DU-6542-10A-01D-1893-08 Untested Somatic Phase_I WXS none Illumina GAIIx 96dd5230-96ed-40d9-a861-339fdb8a9842 d6e9d687-e7e6-475b-8290-ddea4d015a92 CCATCATGGCGATGAACAAGT 0.542 15 109 CLCN6 1185 broad.mit.edu;hgsc.bcm.edu 37 1 11883807 11883810 + Frame_Shift_Del DEL TGAA TGAA - TCGA-DU-6542-01A-11D-1893-08 TCGA-DU-6542-10A-01D-1893-08 Untested Somatic Phase_I WXS none Illumina GAIIx 96dd5230-96ed-40d9-a861-339fdb8a9842 d6e9d687-e7e6-475b-8290-ddea4d015a92 AAATGCTATCTGAATGGCGTAAAG 0.554 29 78