Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_file Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID ref_context gc_content t_alt_count t_ref_count RPP30 10556 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 10 92631801 92631801 + Missense_Mutation SNP G G A TCGA-DU-7007-01A-11D-2024-08 TCGA-DU-7007-10A-01D-2024-08 Untested Somatic Phase_I WXS none Illumina GAIIx df228b01-461e-4a51-8c28-88879459fd88 fa26b78b-94df-41be-a392-604dc13d3b93 GGCTCTGCGCGGACTTGTGGA 0.637 69 94 SPA17 53340 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 11 124564278 124564278 + Missense_Mutation SNP G G A TCGA-DU-7007-01A-11D-2024-08 TCGA-DU-7007-10A-01D-2024-08 Untested Somatic Phase_I WXS none Illumina GAIIx df228b01-461e-4a51-8c28-88879459fd88 fa26b78b-94df-41be-a392-604dc13d3b93 CACATAGCCAGAGAGGAGGCA 0.408 17 98 M6PR 4074 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 12 9094479 9094479 + Missense_Mutation SNP C C T TCGA-DU-7007-01A-11D-2024-08 TCGA-DU-7007-10A-01D-2024-08 Untested Somatic Phase_I WXS none Illumina GAIIx df228b01-461e-4a51-8c28-88879459fd88 fa26b78b-94df-41be-a392-604dc13d3b93 TCCCCCACACCACGATATGCT 0.468 57 449 GPRC5D 55507 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 12 13102595 13102595 + Missense_Mutation SNP C C T TCGA-DU-7007-01A-11D-2024-08 TCGA-DU-7007-10A-01D-2024-08 Untested Somatic Phase_I WXS none Illumina GAIIx df228b01-461e-4a51-8c28-88879459fd88 fa26b78b-94df-41be-a392-604dc13d3b93 GCAATGCAGACGACCGGGTCG 0.567 15 86 DNAH10 196385 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 12 124332564 124332564 + Silent SNP C C T TCGA-DU-7007-01A-11D-2024-08 TCGA-DU-7007-10A-01D-2024-08 Untested Somatic Phase_I WXS none Illumina GAIIx df228b01-461e-4a51-8c28-88879459fd88 fa26b78b-94df-41be-a392-604dc13d3b93 CCGGCAAAACCGAGACCACCA 0.552 57 38 COL4A2 1284 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 13 111147702 111147702 + Silent SNP C C T TCGA-DU-7007-01A-11D-2024-08 TCGA-DU-7007-10A-01D-2024-08 Untested Somatic Phase_I WXS none Illumina GAIIx df228b01-461e-4a51-8c28-88879459fd88 fa26b78b-94df-41be-a392-604dc13d3b93 CTGACATCCACGGAGACCCAG 0.557 12 111 NPAP1 23742 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 15 24921762 24921762 + Missense_Mutation SNP C C T TCGA-DU-7007-01A-11D-2024-08 TCGA-DU-7007-10A-01D-2024-08 Untested Somatic Phase_I WXS none Illumina GAIIx df228b01-461e-4a51-8c28-88879459fd88 fa26b78b-94df-41be-a392-604dc13d3b93 CGGATGTGCCCGGCATCTTGG 0.622 12 61 GPR139 124274 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 16 20043246 20043246 + Silent SNP C C G TCGA-DU-7007-01A-11D-2024-08 TCGA-DU-7007-10A-01D-2024-08 Untested Somatic Phase_I WXS none Illumina GAIIx df228b01-461e-4a51-8c28-88879459fd88 fa26b78b-94df-41be-a392-604dc13d3b93 TGGTGCGGAACCGCTTGCTGA 0.502 21 132 TP53 7157 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 17 7579311 7579311 + Splice_Site SNP C C G rs68140816 TCGA-DU-7007-01A-11D-2024-08 TCGA-DU-7007-10A-01D-2024-08 Untested Somatic Phase_I WXS none Illumina GAIIx df228b01-461e-4a51-8c28-88879459fd88 fa26b78b-94df-41be-a392-604dc13d3b93 GGGCAACTGACCGTGCAAGTC 0.532 56 16 HELZ 9931 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 17 65105453 65105453 + Missense_Mutation SNP T T C TCGA-DU-7007-01A-11D-2024-08 TCGA-DU-7007-10A-01D-2024-08 Untested Somatic Phase_I WXS none Illumina GAIIx df228b01-461e-4a51-8c28-88879459fd88 fa26b78b-94df-41be-a392-604dc13d3b93 TCCCGCCTGATATGCAGGAGA 0.527 29 48 TTYH2 94015 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 17 72246149 72246149 + Silent SNP C C T TCGA-DU-7007-01A-11D-2024-08 TCGA-DU-7007-10A-01D-2024-08 Untested Somatic Phase_I WXS none Illumina GAIIx df228b01-461e-4a51-8c28-88879459fd88 fa26b78b-94df-41be-a392-604dc13d3b93 TTGCCGTGCCCCTCTTCTCCA 0.652 38 58 ACER1 125981 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 19 6307219 6307219 + Missense_Mutation SNP G G A TCGA-DU-7007-01A-11D-2024-08 TCGA-DU-7007-10A-01D-2024-08 Untested Somatic Phase_I WXS none Illumina GAIIx df228b01-461e-4a51-8c28-88879459fd88 fa26b78b-94df-41be-a392-604dc13d3b93 CAAAGCAGACGGTCACTGATC 0.542 12 49 GPR32 2854 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 19 51273893 51273893 + Missense_Mutation SNP T T A TCGA-DU-7007-01A-11D-2024-08 TCGA-DU-7007-10A-01D-2024-08 Untested Somatic Phase_I WXS none Illumina GAIIx df228b01-461e-4a51-8c28-88879459fd88 fa26b78b-94df-41be-a392-604dc13d3b93 GAGGCTGCAGTGACAGGCAAC 0.498 7 17 BSDC1 55108 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 1 32842101 32842101 + Silent SNP G G T TCGA-DU-7007-01A-11D-2024-08 TCGA-DU-7007-10A-01D-2024-08 Untested Somatic Phase_I WXS none Illumina GAIIx df228b01-461e-4a51-8c28-88879459fd88 fa26b78b-94df-41be-a392-604dc13d3b93 GCAGCTTTTGGGACAGGTCCT 0.597 42 63 PCIF1 63935 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 20 44567656 44567656 + Silent SNP C C T TCGA-DU-7007-01A-11D-2024-08 TCGA-DU-7007-10A-01D-2024-08 Untested Somatic Phase_I WXS none Illumina GAIIx df228b01-461e-4a51-8c28-88879459fd88 fa26b78b-94df-41be-a392-604dc13d3b93 ATGAGAATCACGGCAGCCCCC 0.602 14 90 APOBEC3H 164668 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 22 39497965 39497965 + Missense_Mutation SNP C C T TCGA-DU-7007-01A-11D-2024-08 TCGA-DU-7007-10A-01D-2024-08 Untested Somatic Phase_I WXS none Illumina GAIIx df228b01-461e-4a51-8c28-88879459fd88 fa26b78b-94df-41be-a392-604dc13d3b93 CACGAGAAACCGCTTTCCTTC 0.537 29 9 TTN 7273 hgsc.bcm.edu;ucsc.edu 37 2 179613099 179613099 + Missense_Mutation SNP A A C TCGA-DU-7007-01A-11D-2024-08 TCGA-DU-7007-10A-01D-2024-08 Untested Somatic Phase_I WXS none Illumina GAIIx df228b01-461e-4a51-8c28-88879459fd88 fa26b78b-94df-41be-a392-604dc13d3b93 GACTGGAAGAAATTTCTTGAC 0.333 23 124 IDH1 3417 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 2 209113112 209113112 + Missense_Mutation SNP C C T rs121913500 TCGA-DU-7007-01A-11D-2024-08 TCGA-DU-7007-10A-01D-2024-08 Untested Somatic Phase_I WXS none Illumina GAIIx df228b01-461e-4a51-8c28-88879459fd88 fa26b78b-94df-41be-a392-604dc13d3b93 ATAAGCATGACGACCTATGAT 0.393 29 42 CNTN3 5067 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 3 74419100 74419100 + Missense_Mutation SNP G G C TCGA-DU-7007-01A-11D-2024-08 TCGA-DU-7007-10A-01D-2024-08 Untested Somatic Phase_I WXS none Illumina GAIIx df228b01-461e-4a51-8c28-88879459fd88 fa26b78b-94df-41be-a392-604dc13d3b93 AAGAGTTTCTGGAAACTGAAC 0.333 12 68 STX19 415117 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 3 93733522 93733522 + Silent SNP A A G TCGA-DU-7007-01A-11D-2024-08 TCGA-DU-7007-10A-01D-2024-08 Untested Somatic Phase_I WXS none Illumina GAIIx df228b01-461e-4a51-8c28-88879459fd88 fa26b78b-94df-41be-a392-604dc13d3b93 TCTGTAAGTAAGCTTTCATTA 0.328 11 66 PLCH1 23007 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 3 155198970 155198970 + Silent SNP G G A TCGA-DU-7007-01A-11D-2024-08 TCGA-DU-7007-10A-01D-2024-08 Untested Somatic Phase_I WXS none Illumina GAIIx df228b01-461e-4a51-8c28-88879459fd88 fa26b78b-94df-41be-a392-604dc13d3b93 TCACTGCAGGGGTGGGTGCTG 0.577 10 68 ZBBX 79740 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 3 166960403 166960403 + Silent SNP G G T TCGA-DU-7007-01A-11D-2024-08 TCGA-DU-7007-10A-01D-2024-08 Untested Somatic Phase_I WXS none Illumina GAIIx df228b01-461e-4a51-8c28-88879459fd88 fa26b78b-94df-41be-a392-604dc13d3b93 ACTCTTCTGAGGTTAAGCTGT 0.368 9 20 SKP2 6502 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 5 36152899 36152899 + Missense_Mutation SNP T T A TCGA-DU-7007-01A-11D-2024-08 TCGA-DU-7007-10A-01D-2024-08 Untested Somatic Phase_I WXS none Illumina GAIIx df228b01-461e-4a51-8c28-88879459fd88 fa26b78b-94df-41be-a392-604dc13d3b93 ATTCCAGACCTGAGTAGCAAC 0.517 17 50 GABRA6 2559 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 5 161118969 161118969 + Missense_Mutation SNP G G A TCGA-DU-7007-01A-11D-2024-08 TCGA-DU-7007-10A-01D-2024-08 Untested Somatic Phase_I WXS none Illumina GAIIx df228b01-461e-4a51-8c28-88879459fd88 fa26b78b-94df-41be-a392-604dc13d3b93 TTTTAACTATGACCACTTTGA 0.403 10 79 DLX5 1749 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 7 96651603 96651603 + Missense_Mutation SNP G G C TCGA-DU-7007-01A-11D-2024-08 TCGA-DU-7007-10A-01D-2024-08 Untested Somatic Phase_I WXS none Illumina GAIIx df228b01-461e-4a51-8c28-88879459fd88 fa26b78b-94df-41be-a392-604dc13d3b93 CTGAAAGCTGGAATAAATAGT 0.498 47 77 PAX4 5078 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 7 127255046 127255046 + Missense_Mutation SNP G G C TCGA-DU-7007-01A-11D-2024-08 TCGA-DU-7007-10A-01D-2024-08 Untested Somatic Phase_I WXS none Illumina GAIIx df228b01-461e-4a51-8c28-88879459fd88 fa26b78b-94df-41be-a392-604dc13d3b93 AGCCACCACAGGGGGTGTAGC 0.582 46 71 KEL 3792 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 7 142655011 142655011 + Missense_Mutation SNP C C T TCGA-DU-7007-01A-11D-2024-08 TCGA-DU-7007-10A-01D-2024-08 Untested Somatic Phase_I WXS none Illumina GAIIx df228b01-461e-4a51-8c28-88879459fd88 fa26b78b-94df-41be-a392-604dc13d3b93 TCTCAGCGTTCGGTTAAAGTT 0.522 16 42 BICD2 23299 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 9 95481306 95481306 + Missense_Mutation SNP C C T TCGA-DU-7007-01A-11D-2024-08 TCGA-DU-7007-10A-01D-2024-08 Untested Somatic Phase_I WXS none Illumina GAIIx df228b01-461e-4a51-8c28-88879459fd88 fa26b78b-94df-41be-a392-604dc13d3b93 CACATGCACACGTGGTGGTAG 0.657 22 67 DBH 1621 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 9 136501814 136501814 + Silent SNP G G A TCGA-DU-7007-01A-11D-2024-08 TCGA-DU-7007-10A-01D-2024-08 Untested Somatic Phase_I WXS none Illumina GAIIx df228b01-461e-4a51-8c28-88879459fd88 fa26b78b-94df-41be-a392-604dc13d3b93 GGACCGATGGGGACACTGCCT 0.617 7 26 COL4A5 1287 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 X 107938508 107938508 + Silent SNP A A T TCGA-DU-7007-01A-11D-2024-08 TCGA-DU-7007-10A-01D-2024-08 Untested Somatic Phase_I WXS none Illumina GAIIx df228b01-461e-4a51-8c28-88879459fd88 fa26b78b-94df-41be-a392-604dc13d3b93 ATACAAGTGCAGGGGCAGAAG 0.488 19 58 ZNF629 23361 broad.mit.edu;ucsc.edu 37 16 30795077 30795077 + Missense_Mutation SNP G G A TCGA-DU-7007-01A-11D-2024-08 TCGA-DU-7007-10A-01D-2024-08 Untested Somatic Phase_I WXS none Illumina GAIIx df228b01-461e-4a51-8c28-88879459fd88 fa26b78b-94df-41be-a392-604dc13d3b93 CACCAGGTGCGAGCTCTGCGT 0.657 4 38 OLFM3 118427 broad.mit.edu;ucsc.edu 37 1 102290602 102290602 + Missense_Mutation SNP C C T TCGA-DU-7007-01A-11D-2024-08 TCGA-DU-7007-10A-01D-2024-08 Untested Somatic Phase_I WXS none Illumina GAIIx df228b01-461e-4a51-8c28-88879459fd88 fa26b78b-94df-41be-a392-604dc13d3b93 CATGCAGTCACGAAGTCTTGT 0.373 7 44 MUC17 140453 broad.mit.edu;ucsc.edu 37 7 100679309 100679309 + Missense_Mutation SNP C C G TCGA-DU-7007-01A-11D-2024-08 TCGA-DU-7007-10A-01D-2024-08 Untested Somatic Phase_I WXS none Illumina GAIIx df228b01-461e-4a51-8c28-88879459fd88 fa26b78b-94df-41be-a392-604dc13d3b93 TTCAACAACTCCTGCTGTCAC 0.473 46 257 COL14A1 7373 broad.mit.edu;ucsc.edu 37 8 121290392 121290392 + Nonsense_Mutation SNP A A T TCGA-DU-7007-01A-11D-2024-08 TCGA-DU-7007-10A-01D-2024-08 Untested Somatic Phase_I WXS none Illumina GAIIx df228b01-461e-4a51-8c28-88879459fd88 fa26b78b-94df-41be-a392-604dc13d3b93 AACAGAATTTAAACTAAATGC 0.378 52 63 CXXC4 80319 broad.mit.edu;ucsc.edu 37 4 105412082 105412082 + Missense_Mutation SNP C C T TCGA-DU-7007-01A-11D-2024-08 TCGA-DU-7007-10A-01D-2024-08 Untested Somatic Phase_I WXS none Illumina GAIIx df228b01-461e-4a51-8c28-88879459fd88 fa26b78b-94df-41be-a392-604dc13d3b93 GCCAGCTCCCCCTGAGGAGGA 0.602 13 61 CCDC33 80125 broad.mit.edu;ucsc.edu 37 15 74554908 74554908 + Nonsense_Mutation SNP C C T TCGA-DU-7007-01A-11D-2024-08 TCGA-DU-7007-10A-01D-2024-08 Untested Somatic Phase_I WXS none Illumina GAIIx df228b01-461e-4a51-8c28-88879459fd88 fa26b78b-94df-41be-a392-604dc13d3b93 GGATGCAGGGCAAGAAGGTAA 0.597 4 13 ROS1 6098 broad.mit.edu;hgsc.bcm.edu 37 6 117746774 117746774 + Frame_Shift_Del DEL T T - TCGA-DU-7007-01A-11D-2024-08 TCGA-DU-7007-10A-01D-2024-08 Untested Somatic Phase_I WXS none Illumina GAIIx df228b01-461e-4a51-8c28-88879459fd88 fa26b78b-94df-41be-a392-604dc13d3b93 CAGCCAAGAGTTGCAAAATTG 0.378 60 90 METAP2 10988 broad.mit.edu;hgsc.bcm.edu 37 12 95868076 95868078 + In_Frame_Del DEL AAG AAG - TCGA-DU-7007-01A-11D-2024-08 TCGA-DU-7007-10A-01D-2024-08 Untested Somatic Phase_I WXS none Illumina GAIIx df228b01-461e-4a51-8c28-88879459fd88 fa26b78b-94df-41be-a392-604dc13d3b93 AAAAAGACGAAAGAAGAAGAAGA 0.557 11 45 ATRX 546 broad.mit.edu 37 X 76814313 76814313 + Nonsense_Mutation SNP G G A TCGA-DU-7007-01A-11D-2024-08 TCGA-DU-7007-10A-01D-2024-08 Untested Somatic Phase_I WXS none Illumina GAIIx df228b01-461e-4a51-8c28-88879459fd88 fa26b78b-94df-41be-a392-604dc13d3b93 ATAAATAATCGTCCTCTGAAA 0.274 15 6