Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_file Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID ref_context gc_content t_alt_count t_ref_count PC 5091 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 11 66636386 66636386 + Missense_Mutation SNP C C T TCGA-DU-7008-01A-11D-2024-08 TCGA-DU-7008-10A-01D-2024-08 Untested Somatic Phase_I WXS none Illumina GAIIx 3c15983e-ae64-402f-908c-72a55f792e06 1b8094fc-ab39-4fd4-bf93-6cc777c62e61 GTAGTGCTTGCCGTGCCTGTC 0.677 32 48 PPHLN1 51535 hgsc.bcm.edu;broad.mit.edu 37 12 42835164 42835164 + Silent SNP G G A TCGA-DU-7008-01A-11D-2024-08 TCGA-DU-7008-10A-01D-2024-08 Untested Somatic Phase_I WXS none Illumina GAIIx 3c15983e-ae64-402f-908c-72a55f792e06 1b8094fc-ab39-4fd4-bf93-6cc777c62e61 TGAAAATGCTGATTGAAAAAG 0.368 8 116 TP53 7157 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 17 7577129 7577129 + Missense_Mutation SNP A A G TCGA-DU-7008-01A-11D-2024-08 TCGA-DU-7008-10A-01D-2024-08 Untested Somatic Phase_I WXS none Illumina GAIIx 3c15983e-ae64-402f-908c-72a55f792e06 1b8094fc-ab39-4fd4-bf93-6cc777c62e61 ACGCACCTCAAAGCTGTTCCG 0.537 8 11 PIEZO2 63895 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 18 10671757 10671757 + Missense_Mutation SNP A A T TCGA-DU-7008-01A-11D-2024-08 TCGA-DU-7008-10A-01D-2024-08 Untested Somatic Phase_I WXS none Illumina GAIIx 3c15983e-ae64-402f-908c-72a55f792e06 1b8094fc-ab39-4fd4-bf93-6cc777c62e61 AGGACAACTGAAGCATATAAT 0.318 12 92 ZNF791 163049 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 19 12739849 12739849 + Silent SNP G G T TCGA-DU-7008-01A-11D-2024-08 TCGA-DU-7008-10A-01D-2024-08 Untested Somatic Phase_I WXS none Illumina GAIIx 3c15983e-ae64-402f-908c-72a55f792e06 1b8094fc-ab39-4fd4-bf93-6cc777c62e61 AGGAATGCGGGAAGGCCTTTA 0.388 41 63 ZNF571 51276 hgsc.bcm.edu;ucsc.edu 37 19 38055540 38055540 + Missense_Mutation SNP C C T TCGA-DU-7008-01A-11D-2024-08 TCGA-DU-7008-10A-01D-2024-08 Untested Somatic Phase_I WXS none Illumina GAIIx 3c15983e-ae64-402f-908c-72a55f792e06 1b8094fc-ab39-4fd4-bf93-6cc777c62e61 TTGTGAAGGACATCTAAAGTC 0.373 12 31 TMEM82 388595 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 1 16074101 16074101 + Missense_Mutation SNP C C A TCGA-DU-7008-01A-11D-2024-08 TCGA-DU-7008-10A-01D-2024-08 Untested Somatic Phase_I WXS none Illumina GAIIx 3c15983e-ae64-402f-908c-72a55f792e06 1b8094fc-ab39-4fd4-bf93-6cc777c62e61 CTCGGCACCCCAGTCCCAGAG 0.602 26 65 OR2T11 127077 hgsc.bcm.edu;broad.mit.edu 37 1 248789593 248789593 + Silent SNP C C T TCGA-DU-7008-01A-11D-2024-08 TCGA-DU-7008-10A-01D-2024-08 Untested Somatic Phase_I WXS none Illumina GAIIx 3c15983e-ae64-402f-908c-72a55f792e06 1b8094fc-ab39-4fd4-bf93-6cc777c62e61 TAAGCATGGGCGTGACAATGG 0.488 11 111 PPP1R16B 26051 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 20 37536526 37536526 + Silent SNP C C T TCGA-DU-7008-01A-11D-2024-08 TCGA-DU-7008-10A-01D-2024-08 Untested Somatic Phase_I WXS none Illumina GAIIx 3c15983e-ae64-402f-908c-72a55f792e06 1b8094fc-ab39-4fd4-bf93-6cc777c62e61 GAAGTCACAGCTGAGGCACAA 0.592 18 44 KRTAP13-4 284827 hgsc.bcm.edu;ucsc.edu 37 21 31802769 31802769 + Missense_Mutation SNP C C T TCGA-DU-7008-01A-11D-2024-08 TCGA-DU-7008-10A-01D-2024-08 Untested Somatic Phase_I WXS none Illumina GAIIx 3c15983e-ae64-402f-908c-72a55f792e06 1b8094fc-ab39-4fd4-bf93-6cc777c62e61 TGGGAGCCCGCCAGCTGCCAG 0.617 9 89 LMF2 91289 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 22 50944111 50944111 + Missense_Mutation SNP G G A rs149785243 TCGA-DU-7008-01A-11D-2024-08 TCGA-DU-7008-10A-01D-2024-08 Untested Somatic Phase_I WXS none Illumina GAIIx 3c15983e-ae64-402f-908c-72a55f792e06 1b8094fc-ab39-4fd4-bf93-6cc777c62e61 ACAGGTGGCCGTCTTCTTGCG 0.642 17 30 SF3B1 23451 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 2 198268407 198268407 + Missense_Mutation SNP A A G TCGA-DU-7008-01A-11D-2024-08 TCGA-DU-7008-10A-01D-2024-08 Untested Somatic Phase_I WXS none Illumina GAIIx 3c15983e-ae64-402f-908c-72a55f792e06 1b8094fc-ab39-4fd4-bf93-6cc777c62e61 AGTGTAGGAGACATCAGCAGA 0.408 27 22 IDH1 3417 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 2 209113112 209113112 + Missense_Mutation SNP C C T rs121913500 TCGA-DU-7008-01A-11D-2024-08 TCGA-DU-7008-10A-01D-2024-08 Untested Somatic Phase_I WXS none Illumina GAIIx 3c15983e-ae64-402f-908c-72a55f792e06 1b8094fc-ab39-4fd4-bf93-6cc777c62e61 ATAAGCATGACGACCTATGAT 0.393 27 53 HTR2B 3357 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 2 231973908 231973908 + Nonsense_Mutation SNP G G A TCGA-DU-7008-01A-11D-2024-08 TCGA-DU-7008-10A-01D-2024-08 Untested Somatic Phase_I WXS none Illumina GAIIx 3c15983e-ae64-402f-908c-72a55f792e06 1b8094fc-ab39-4fd4-bf93-6cc777c62e61 GTTAGGCGTTGAGGTGGCTTG 0.453 44 64 MAP3K13 9175 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 3 185161416 185161416 + Silent SNP A A G TCGA-DU-7008-01A-11D-2024-08 TCGA-DU-7008-10A-01D-2024-08 Untested Somatic Phase_I WXS none Illumina GAIIx 3c15983e-ae64-402f-908c-72a55f792e06 1b8094fc-ab39-4fd4-bf93-6cc777c62e61 GTGATCTCAAATCACCTAAGT 0.378 39 61 FAT1 2195 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 4 187524637 187524637 + Silent SNP A A G TCGA-DU-7008-01A-11D-2024-08 TCGA-DU-7008-10A-01D-2024-08 Untested Somatic Phase_I WXS none Illumina GAIIx 3c15983e-ae64-402f-908c-72a55f792e06 1b8094fc-ab39-4fd4-bf93-6cc777c62e61 ACTGCAAACTAACAATCTGTA 0.478 7 26 HSD17B4 3295 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 5 118867014 118867014 + Silent SNP G G A TCGA-DU-7008-01A-11D-2024-08 TCGA-DU-7008-10A-01D-2024-08 Untested Somatic Phase_I WXS none Illumina GAIIx 3c15983e-ae64-402f-908c-72a55f792e06 1b8094fc-ab39-4fd4-bf93-6cc777c62e61 GCCGCCTAAAGGATATTGGGC 0.403 39 50 FAT2 2196 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 5 150925553 150925553 + Missense_Mutation SNP A A G TCGA-DU-7008-01A-11D-2024-08 TCGA-DU-7008-10A-01D-2024-08 Untested Somatic Phase_I WXS none Illumina GAIIx 3c15983e-ae64-402f-908c-72a55f792e06 1b8094fc-ab39-4fd4-bf93-6cc777c62e61 CTGGGTGGAAATAAGGCCAGA 0.443 68 66 TIMD4 91937 hgsc.bcm.edu;broad.mit.edu 37 5 156349194 156349194 + Missense_Mutation SNP T T A TCGA-DU-7008-01A-11D-2024-08 TCGA-DU-7008-10A-01D-2024-08 Untested Somatic Phase_I WXS none Illumina GAIIx 3c15983e-ae64-402f-908c-72a55f792e06 1b8094fc-ab39-4fd4-bf93-6cc777c62e61 GAGATGGGCATTTCATTCTTC 0.517 6 68 KLHDC3 116138 hgsc.bcm.edu;broad.mit.edu 37 6 42986679 42986679 + Missense_Mutation SNP G G A TCGA-DU-7008-01A-11D-2024-08 TCGA-DU-7008-10A-01D-2024-08 Untested Somatic Phase_I WXS none Illumina GAIIx 3c15983e-ae64-402f-908c-72a55f792e06 1b8094fc-ab39-4fd4-bf93-6cc777c62e61 TGTATTGTTGGTGACAAGATT 0.512 8 127 XK 7504 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 X 37587096 37587096 + Missense_Mutation SNP T T A TCGA-DU-7008-01A-11D-2024-08 TCGA-DU-7008-10A-01D-2024-08 Untested Somatic Phase_I WXS none Illumina GAIIx 3c15983e-ae64-402f-908c-72a55f792e06 1b8094fc-ab39-4fd4-bf93-6cc777c62e61 TGGGTGGTGGTTATAATACTC 0.498 13 30 USP11 8237 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 X 47101045 47101045 + Missense_Mutation SNP G G A TCGA-DU-7008-01A-11D-2024-08 TCGA-DU-7008-10A-01D-2024-08 Untested Somatic Phase_I WXS none Illumina GAIIx 3c15983e-ae64-402f-908c-72a55f792e06 1b8094fc-ab39-4fd4-bf93-6cc777c62e61 CCTTAATCGGGTGAAGAAGAA 0.557 36 29 XKRX 402415 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 X 100169558 100169558 + Missense_Mutation SNP T T A TCGA-DU-7008-01A-11D-2024-08 TCGA-DU-7008-10A-01D-2024-08 Untested Somatic Phase_I WXS none Illumina GAIIx 3c15983e-ae64-402f-908c-72a55f792e06 1b8094fc-ab39-4fd4-bf93-6cc777c62e61 TCAGTAACACTTTCACTCCAA 0.423 97 123 PDZD4 57595 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 X 153069774 153069774 + Silent SNP G G T TCGA-DU-7008-01A-11D-2024-08 TCGA-DU-7008-10A-01D-2024-08 Untested Somatic Phase_I WXS none Illumina GAIIx 3c15983e-ae64-402f-908c-72a55f792e06 1b8094fc-ab39-4fd4-bf93-6cc777c62e61 CGTGCTTCTTGGGCTCGCTGG 0.652 18 47 GNPDA1 10007 broad.mit.edu;ucsc.edu 37 5 141381656 141381656 + Missense_Mutation SNP A A G TCGA-DU-7008-01A-11D-2024-08 TCGA-DU-7008-10A-01D-2024-08 Untested Somatic Phase_I WXS none Illumina GAIIx 3c15983e-ae64-402f-908c-72a55f792e06 1b8094fc-ab39-4fd4-bf93-6cc777c62e61 TTGATACTGTACAAGGGGTCC 0.388 13 36 SLC25A53 401612 broad.mit.edu;ucsc.edu 37 X 103349504 103349504 + Missense_Mutation SNP C C T TCGA-DU-7008-01A-11D-2024-08 TCGA-DU-7008-10A-01D-2024-08 Untested Somatic Phase_I WXS none Illumina GAIIx 3c15983e-ae64-402f-908c-72a55f792e06 1b8094fc-ab39-4fd4-bf93-6cc777c62e61 AGCTTGCTTGCGACCATCCTG 0.587 72 106 OR9A2 135924 broad.mit.edu;ucsc.edu 37 7 142723665 142723665 + Silent SNP G G A TCGA-DU-7008-01A-11D-2024-08 TCGA-DU-7008-10A-01D-2024-08 Untested Somatic Phase_I WXS none Illumina GAIIx 3c15983e-ae64-402f-908c-72a55f792e06 1b8094fc-ab39-4fd4-bf93-6cc777c62e61 GAGTGTTATCGCAGGACAGTT 0.393 49 191 NUMA1 4926 broad.mit.edu;ucsc.edu 37 11 71718269 71718269 + Missense_Mutation SNP C C T TCGA-DU-7008-01A-11D-2024-08 TCGA-DU-7008-10A-01D-2024-08 Untested Somatic Phase_I WXS none Illumina GAIIx 3c15983e-ae64-402f-908c-72a55f792e06 1b8094fc-ab39-4fd4-bf93-6cc777c62e61 CTGCGTGGTGCGCCGACGAGC 0.632 4 24 SMARCA4 6597 broad.mit.edu;hgsc.bcm.edu 37 19 11144096 11144098 + In_Frame_Del DEL AGA AGA - TCGA-DU-7008-01A-11D-2024-08 TCGA-DU-7008-10A-01D-2024-08 Untested Somatic Phase_I WXS none Illumina GAIIx 3c15983e-ae64-402f-908c-72a55f792e06 1b8094fc-ab39-4fd4-bf93-6cc777c62e61 AACGTGGACCAGAAGGTGATCCA 0.616 48 104 IL4I1 259307 broad.mit.edu;hgsc.bcm.edu 37 19 50394683 50394685 + In_Frame_Del DEL CTT CTT - TCGA-DU-7008-01A-11D-2024-08 TCGA-DU-7008-10A-01D-2024-08 Untested Somatic Phase_I WXS none Illumina GAIIx 3c15983e-ae64-402f-908c-72a55f792e06 1b8094fc-ab39-4fd4-bf93-6cc777c62e61 GCCTTTCAAACTTCTTCATCGCC 0.571 22 104 ATRX 546 broad.mit.edu;hgsc.bcm.edu 37 X 76940037 76940038 + Frame_Shift_Ins INS - - T TCGA-DU-7008-01A-11D-2024-08 TCGA-DU-7008-10A-01D-2024-08 Untested Somatic Phase_I WXS none Illumina GAIIx 3c15983e-ae64-402f-908c-72a55f792e06 1b8094fc-ab39-4fd4-bf93-6cc777c62e61 TGCAGAAAGCATTATGGCAAAA 0.381 121 136