Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_file Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID ref_context gc_content t_alt_count t_ref_count UBE4A 9354 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 11 118239407 118239407 + Silent SNP C C T TCGA-DU-7019-01A-11D-2024-08 TCGA-DU-7019-10A-01D-2024-08 Untested Somatic Phase_I WXS none Illumina GAIIx 16d72485-c192-4735-97fc-e46e71bc0209 f211dabd-dc6e-4168-a894-6a2c1eeb90f8 TGGATGAATTCGATTACTCTG 0.433 84 171 DNAH10 196385 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 12 124335566 124335566 + Silent SNP C C T TCGA-DU-7019-01A-11D-2024-08 TCGA-DU-7019-10A-01D-2024-08 Untested Somatic Phase_I WXS none Illumina GAIIx 16d72485-c192-4735-97fc-e46e71bc0209 f211dabd-dc6e-4168-a894-6a2c1eeb90f8 TGATCGTGCCCGACCTGCAGC 0.632 17 49 TBC1D4 9882 hgsc.bcm.edu;broad.mit.edu 37 13 76055900 76055900 + Missense_Mutation SNP C C T TCGA-DU-7019-01A-11D-2024-08 TCGA-DU-7019-10A-01D-2024-08 Untested Somatic Phase_I WXS none Illumina GAIIx 16d72485-c192-4735-97fc-e46e71bc0209 f211dabd-dc6e-4168-a894-6a2c1eeb90f8 CTGGGCGGCTCCATAACTCTC 0.731 5 6 OR3A2 4995 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 17 3181606 3181606 + Silent SNP G G A TCGA-DU-7019-01A-11D-2024-08 TCGA-DU-7019-10A-01D-2024-08 Untested Somatic Phase_I WXS none Illumina GAIIx 16d72485-c192-4735-97fc-e46e71bc0209 f211dabd-dc6e-4168-a894-6a2c1eeb90f8 CCACAGCAAAGAGCAGCAGCT 0.537 38 66 TP53 7157 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 17 7578406 7578406 + Missense_Mutation SNP C C T rs28934578 TCGA-DU-7019-01A-11D-2024-08 TCGA-DU-7019-10A-01D-2024-08 Untested Somatic Phase_I WXS none Illumina GAIIx 16d72485-c192-4735-97fc-e46e71bc0209 f211dabd-dc6e-4168-a894-6a2c1eeb90f8 GTGGGGGCAGCGCCTCACAAC 0.652 57 21 WRAP53 55135 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 17 7592042 7592042 + Missense_Mutation SNP T T C TCGA-DU-7019-01A-11D-2024-08 TCGA-DU-7019-10A-01D-2024-08 Untested Somatic Phase_I WXS none Illumina GAIIx 16d72485-c192-4735-97fc-e46e71bc0209 f211dabd-dc6e-4168-a894-6a2c1eeb90f8 AGCCCATCCTTCTCCCCACGC 0.587 20 59 SUMO2 6613 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 17 73177151 73177151 + Splice_Site SNP C C G TCGA-DU-7019-01A-11D-2024-08 TCGA-DU-7019-10A-01D-2024-08 Untested Somatic Phase_I WXS none Illumina GAIIx 16d72485-c192-4735-97fc-e46e71bc0209 f211dabd-dc6e-4168-a894-6a2c1eeb90f8 GAATTCCTCACCTGTCGTTCA 0.363 18 47 C19orf26 0 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 19 1231248 1231248 + Missense_Mutation SNP G G A TCGA-DU-7019-01A-11D-2024-08 TCGA-DU-7019-10A-01D-2024-08 Untested Somatic Phase_I WXS none Illumina GAIIx 16d72485-c192-4735-97fc-e46e71bc0209 f211dabd-dc6e-4168-a894-6a2c1eeb90f8 GCCCGCTGCCGCTGGAAGTGG 0.667 34 63 NWD1 284434 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 19 16860740 16860740 + Silent SNP C C T TCGA-DU-7019-01A-11D-2024-08 TCGA-DU-7019-10A-01D-2024-08 Untested Somatic Phase_I WXS none Illumina GAIIx 16d72485-c192-4735-97fc-e46e71bc0209 f211dabd-dc6e-4168-a894-6a2c1eeb90f8 GCAGAAACTTCGAGTCTCTCG 0.617 16 138 PVR 5817 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 19 45153147 45153147 + Missense_Mutation SNP G G A TCGA-DU-7019-01A-11D-2024-08 TCGA-DU-7019-10A-01D-2024-08 Untested Somatic Phase_I WXS none Illumina GAIIx 16d72485-c192-4735-97fc-e46e71bc0209 f211dabd-dc6e-4168-a894-6a2c1eeb90f8 CCCATGGCCCGCTGCGTCTCC 0.612 23 144 ZC3H4 23211 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 19 47575123 47575123 + Silent SNP G G A TCGA-DU-7019-01A-11D-2024-08 TCGA-DU-7019-10A-01D-2024-08 Untested Somatic Phase_I WXS none Illumina GAIIx 16d72485-c192-4735-97fc-e46e71bc0209 f211dabd-dc6e-4168-a894-6a2c1eeb90f8 GCGGGATAGGGGGCATCATTC 0.622 15 32 LILRA1 11024 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 19 55106273 55106273 + Missense_Mutation SNP C C T TCGA-DU-7019-01A-11D-2024-08 TCGA-DU-7019-10A-01D-2024-08 Untested Somatic Phase_I WXS none Illumina GAIIx 16d72485-c192-4735-97fc-e46e71bc0209 f211dabd-dc6e-4168-a894-6a2c1eeb90f8 CTGGATTACACGGATCCCACA 0.562 51 90 CLCNKB 1188 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 1 16378309 16378309 + Silent SNP C C T TCGA-DU-7019-01A-11D-2024-08 TCGA-DU-7019-10A-01D-2024-08 Untested Somatic Phase_I WXS none Illumina GAIIx 16d72485-c192-4735-97fc-e46e71bc0209 f211dabd-dc6e-4168-a894-6a2c1eeb90f8 GGGGTATGCTCTGGCAGGTGA 0.622 30 54 SLC24A3 57419 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 20 19677486 19677486 + Missense_Mutation SNP G G A TCGA-DU-7019-01A-11D-2024-08 TCGA-DU-7019-10A-01D-2024-08 Untested Somatic Phase_I WXS none Illumina GAIIx 16d72485-c192-4735-97fc-e46e71bc0209 f211dabd-dc6e-4168-a894-6a2c1eeb90f8 CGTCATCATGGGGATCACCTT 0.592 15 35 KRTAP19-2 337969 hgsc.bcm.edu;broad.mit.edu 37 21 31859568 31859568 + Missense_Mutation SNP C C T TCGA-DU-7019-01A-11D-2024-08 TCGA-DU-7019-10A-01D-2024-08 Untested Somatic Phase_I WXS none Illumina GAIIx 16d72485-c192-4735-97fc-e46e71bc0209 f211dabd-dc6e-4168-a894-6a2c1eeb90f8 CAGCCATCTCCACAGCCTCTG 0.512 8 156 KCNJ15 3772 hgsc.bcm.edu;broad.mit.edu 37 21 39671533 39671533 + Missense_Mutation SNP C C T TCGA-DU-7019-01A-11D-2024-08 TCGA-DU-7019-10A-01D-2024-08 Untested Somatic Phase_I WXS none Illumina GAIIx 16d72485-c192-4735-97fc-e46e71bc0209 f211dabd-dc6e-4168-a894-6a2c1eeb90f8 CTCACTGGGGCGTTTCTCTTT 0.493 10 113 RASL10A 10633 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 22 29709887 29709887 + Silent SNP G G A TCGA-DU-7019-01A-11D-2024-08 TCGA-DU-7019-10A-01D-2024-08 Untested Somatic Phase_I WXS none Illumina GAIIx 16d72485-c192-4735-97fc-e46e71bc0209 f211dabd-dc6e-4168-a894-6a2c1eeb90f8 GGGCCTTCACGTAGTCGAAAC 0.652 5 39 EIF3L 51386 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 22 38270462 38270462 + Silent SNP C C T TCGA-DU-7019-01A-11D-2024-08 TCGA-DU-7019-10A-01D-2024-08 Untested Somatic Phase_I WXS none Illumina GAIIx 16d72485-c192-4735-97fc-e46e71bc0209 f211dabd-dc6e-4168-a894-6a2c1eeb90f8 GGCTTCTCCGCCTGCACTCCC 0.552 34 38 DNAH7 56171 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 2 196765182 196765182 + Missense_Mutation SNP A A G TCGA-DU-7019-01A-11D-2024-08 TCGA-DU-7019-10A-01D-2024-08 Untested Somatic Phase_I WXS none Illumina GAIIx 16d72485-c192-4735-97fc-e46e71bc0209 f211dabd-dc6e-4168-a894-6a2c1eeb90f8 ATCATGGCATAGTCAGGTACC 0.418 11 150 IDH1 3417 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 2 209113112 209113112 + Missense_Mutation SNP C C T rs121913500 TCGA-DU-7019-01A-11D-2024-08 TCGA-DU-7019-10A-01D-2024-08 Untested Somatic Phase_I WXS none Illumina GAIIx 16d72485-c192-4735-97fc-e46e71bc0209 f211dabd-dc6e-4168-a894-6a2c1eeb90f8 ATAAGCATGACGACCTATGAT 0.393 28 42 FANCD2OS 115795 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 3 10146220 10146220 + Missense_Mutation SNP C C T TCGA-DU-7019-01A-11D-2024-08 TCGA-DU-7019-10A-01D-2024-08 Untested Somatic Phase_I WXS none Illumina GAIIx 16d72485-c192-4735-97fc-e46e71bc0209 f211dabd-dc6e-4168-a894-6a2c1eeb90f8 GTTCATCGTGCGCAACTCTGA 0.532 6 55 SCN5A 6331 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 3 38598771 38598771 + Missense_Mutation SNP G G A TCGA-DU-7019-01A-11D-2024-08 TCGA-DU-7019-10A-01D-2024-08 Untested Somatic Phase_I WXS none Illumina GAIIx 16d72485-c192-4735-97fc-e46e71bc0209 f211dabd-dc6e-4168-a894-6a2c1eeb90f8 GCCTTTAAATGTTGCCTGGGA 0.498 7 36 KIAA1211 57482 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 4 57182125 57182125 + Silent SNP G G A TCGA-DU-7019-01A-11D-2024-08 TCGA-DU-7019-10A-01D-2024-08 Untested Somatic Phase_I WXS none Illumina GAIIx 16d72485-c192-4735-97fc-e46e71bc0209 f211dabd-dc6e-4168-a894-6a2c1eeb90f8 TCACGACCTCGTCGGACAGCG 0.537 25 72 PRMT10 90826 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 4 148594115 148594115 + Silent SNP G G T TCGA-DU-7019-01A-11D-2024-08 TCGA-DU-7019-10A-01D-2024-08 Untested Somatic Phase_I WXS none Illumina GAIIx 16d72485-c192-4735-97fc-e46e71bc0209 f211dabd-dc6e-4168-a894-6a2c1eeb90f8 AATACCTTTCGGGAATATGTT 0.328 37 103 PRPS1L1 221823 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 7 18067044 18067044 + Missense_Mutation SNP G G A TCGA-DU-7019-01A-11D-2024-08 TCGA-DU-7019-10A-01D-2024-08 Untested Somatic Phase_I WXS none Illumina GAIIx 16d72485-c192-4735-97fc-e46e71bc0209 f211dabd-dc6e-4168-a894-6a2c1eeb90f8 GATATGATCCGCACCTGCTAT 0.473 45 77 LRRC8A 56262 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 9 131671134 131671134 + Missense_Mutation SNP A A G TCGA-DU-7019-01A-11D-2024-08 TCGA-DU-7019-10A-01D-2024-08 Untested Somatic Phase_I WXS none Illumina GAIIx 16d72485-c192-4735-97fc-e46e71bc0209 f211dabd-dc6e-4168-a894-6a2c1eeb90f8 GTGGTCACAGATGTGGGCGTG 0.572 12 29 CNKSR2 22866 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 X 21534627 21534627 + Missense_Mutation SNP G G T TCGA-DU-7019-01A-11D-2024-08 TCGA-DU-7019-10A-01D-2024-08 Untested Somatic Phase_I WXS none Illumina GAIIx 16d72485-c192-4735-97fc-e46e71bc0209 f211dabd-dc6e-4168-a894-6a2c1eeb90f8 GAAAAATTTGGTGAATGCACT 0.398 25 12 ZKSCAN2 342357 broad.mit.edu;ucsc.edu 37 16 25251836 25251836 + Silent SNP G G A TCGA-DU-7019-01A-11D-2024-08 TCGA-DU-7019-10A-01D-2024-08 Untested Somatic Phase_I WXS none Illumina GAIIx 16d72485-c192-4735-97fc-e46e71bc0209 f211dabd-dc6e-4168-a894-6a2c1eeb90f8 GATGCACAACGGCTTTCCCTA 0.473 26 51 TPR 7175 broad.mit.edu;hgsc.bcm.edu 37 1 186302356 186302358 + In_Frame_Del DEL GAG GAG - TCGA-DU-7019-01A-11D-2024-08 TCGA-DU-7019-10A-01D-2024-08 Untested Somatic Phase_I WXS none Illumina GAIIx 16d72485-c192-4735-97fc-e46e71bc0209 f211dabd-dc6e-4168-a894-6a2c1eeb90f8 GGCTCAATCTGAGGATGACTCTG 0.443 24 88 SNX16 64089 broad.mit.edu;hgsc.bcm.edu 37 8 82752142 82752144 + In_Frame_Del DEL CTT CTT - rs142163451 TCGA-DU-7019-01A-11D-2024-08 TCGA-DU-7019-10A-01D-2024-08 Untested Somatic Phase_I WXS none Illumina GAIIx 16d72485-c192-4735-97fc-e46e71bc0209 f211dabd-dc6e-4168-a894-6a2c1eeb90f8 AAAAGAAGAACTTCTTTGATTTC 0.389 40 153 HAP1 9001 broad.mit.edu;hgsc.bcm.edu 37 17 39881249 39881249 + Frame_Shift_Del DEL C C - TCGA-DU-7019-01A-11D-2024-08 TCGA-DU-7019-10A-01D-2024-08 Untested Somatic Phase_I WXS none Illumina GAIIx 16d72485-c192-4735-97fc-e46e71bc0209 f211dabd-dc6e-4168-a894-6a2c1eeb90f8 CCTTCCTCAGCCGGCACCTTC 0.627 84 324 SMARCA4 6597 broad.mit.edu;hgsc.bcm.edu 37 19 11106926 11106928 + In_Frame_Del DEL AGA AGA - TCGA-DU-7019-01A-11D-2024-08 TCGA-DU-7019-10A-01D-2024-08 Untested Somatic Phase_I WXS none Illumina GAIIx 16d72485-c192-4735-97fc-e46e71bc0209 f211dabd-dc6e-4168-a894-6a2c1eeb90f8 CTCATCGACCAGAAGAAGGACAA 0.576 52 162 KCNG1 3755 broad.mit.edu;hgsc.bcm.edu 37 20 49626525 49626527 + In_Frame_Del DEL GAA GAA - TCGA-DU-7019-01A-11D-2024-08 TCGA-DU-7019-10A-01D-2024-08 Untested Somatic Phase_I WXS none Illumina GAIIx 16d72485-c192-4735-97fc-e46e71bc0209 f211dabd-dc6e-4168-a894-6a2c1eeb90f8 GGTTGCGGTCGAAGAAGAACTCG 0.645 13 49 NXF4 55999 broad.mit.edu;hgsc.bcm.edu 37 X 101818628 101818630 + RNA DEL ATT ATT - TCGA-DU-7019-01A-11D-2024-08 TCGA-DU-7019-10A-01D-2024-08 Untested Somatic Phase_I WXS none Illumina GAIIx 16d72485-c192-4735-97fc-e46e71bc0209 f211dabd-dc6e-4168-a894-6a2c1eeb90f8 CCTGCCTGACATTATAGAGAAGG 0.458 13 15