Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_file Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID ref_context gc_content t_alt_count t_ref_count LRRC18 474354 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 10 50122058 50122058 + Missense_Mutation SNP C C T TCGA-DU-7302-01A-11D-2086-08 TCGA-DU-7302-10A-01D-2086-08 Untested Somatic Phase_I WXS none Illumina GAIIx cda7efe2-081f-427a-b863-c894647a16cf 9d8cc8bc-2c5a-42b2-9b91-8bbf43ca81bb GTCACTAAGGCGCAGAATACA 0.507 25 54 CDH23 64072 hgsc.bcm.edu;broad.mit.edu 37 10 73544798 73544798 + Missense_Mutation SNP C C T TCGA-DU-7302-01A-11D-2086-08 TCGA-DU-7302-10A-01D-2086-08 Untested Somatic Phase_I WXS none Illumina GAIIx cda7efe2-081f-427a-b863-c894647a16cf 9d8cc8bc-2c5a-42b2-9b91-8bbf43ca81bb CTGCAATGCACGCCTCACCTT 0.602 11 124 CCDC89 220388 hgsc.bcm.edu;broad.mit.edu 37 11 85397064 85397064 + Missense_Mutation SNP G G A TCGA-DU-7302-01A-11D-2086-08 TCGA-DU-7302-10A-01D-2086-08 Untested Somatic Phase_I WXS none Illumina GAIIx cda7efe2-081f-427a-b863-c894647a16cf 9d8cc8bc-2c5a-42b2-9b91-8bbf43ca81bb CTTAAACTCCGTCTCCTCTTC 0.552 5 62 KCNJ1 3758 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 11 128710111 128710111 + Missense_Mutation SNP C C T TCGA-DU-7302-01A-11D-2086-08 TCGA-DU-7302-10A-01D-2086-08 Untested Somatic Phase_I WXS none Illumina GAIIx cda7efe2-081f-427a-b863-c894647a16cf 9d8cc8bc-2c5a-42b2-9b91-8bbf43ca81bb AAGCGAGTGACGACCCATTTC 0.408 11 106 VWF 7450 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 12 6128787 6128787 + Missense_Mutation SNP G G A rs61749370 TCGA-DU-7302-01A-11D-2086-08 TCGA-DU-7302-10A-01D-2086-08 Untested Somatic Phase_I WXS none Illumina GAIIx cda7efe2-081f-427a-b863-c894647a16cf 9d8cc8bc-2c5a-42b2-9b91-8bbf43ca81bb ATCGTGCAACGGCGGTTCCGA 0.612 26 51 AL021546.6 0 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 12 120894951 120894951 + Missense_Mutation SNP C C T TCGA-DU-7302-01A-11D-2086-08 TCGA-DU-7302-10A-01D-2086-08 Untested Somatic Phase_I WXS none Illumina GAIIx cda7efe2-081f-427a-b863-c894647a16cf 9d8cc8bc-2c5a-42b2-9b91-8bbf43ca81bb ACTCCCATCGCGTCGTGGAGG 0.478 19 37 TGM7 116179 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 15 43584939 43584939 + Missense_Mutation SNP G G A TCGA-DU-7302-01A-11D-2086-08 TCGA-DU-7302-10A-01D-2086-08 Untested Somatic Phase_I WXS none Illumina GAIIx cda7efe2-081f-427a-b863-c894647a16cf 9d8cc8bc-2c5a-42b2-9b91-8bbf43ca81bb TAGGATGAAAGTTCCCAGCGG 0.478 70 97 ACSBG1 23205 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 15 78475123 78475123 + Nonsense_Mutation SNP C C T TCGA-DU-7302-01A-11D-2086-08 TCGA-DU-7302-10A-01D-2086-08 Untested Somatic Phase_I WXS none Illumina GAIIx cda7efe2-081f-427a-b863-c894647a16cf 9d8cc8bc-2c5a-42b2-9b91-8bbf43ca81bb CAACTGTTTCCAGATCTGCAT 0.463 24 40 TMEM8A 58986 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 16 427459 427459 + Silent SNP G G A TCGA-DU-7302-01A-11D-2086-08 TCGA-DU-7302-10A-01D-2086-08 Untested Somatic Phase_I WXS none Illumina GAIIx cda7efe2-081f-427a-b863-c894647a16cf 9d8cc8bc-2c5a-42b2-9b91-8bbf43ca81bb AAACGTTGACGGAGGCATTGC 0.677 14 29 CES3 23491 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 16 66997813 66997813 + Missense_Mutation SNP C C T rs148620443 byFrequency TCGA-DU-7302-01A-11D-2086-08 TCGA-DU-7302-10A-01D-2086-08 Untested Somatic Phase_I WXS none Illumina GAIIx cda7efe2-081f-427a-b863-c894647a16cf 9d8cc8bc-2c5a-42b2-9b91-8bbf43ca81bb AGTCCAGTACCGCCTTGGGGT 0.607 75 77 RFXANK 8625 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 19 19307810 19307810 + Missense_Mutation SNP C C T TCGA-DU-7302-01A-11D-2086-08 TCGA-DU-7302-10A-01D-2086-08 Untested Somatic Phase_I WXS none Illumina GAIIx cda7efe2-081f-427a-b863-c894647a16cf 9d8cc8bc-2c5a-42b2-9b91-8bbf43ca81bb TCTCACCAACCGGCAGCGAGG 0.617 31 241 FASLG 356 hgsc.bcm.edu;broad.mit.edu 37 1 172628634 172628634 + Missense_Mutation SNP G G T TCGA-DU-7302-01A-11D-2086-08 TCGA-DU-7302-10A-01D-2086-08 Untested Somatic Phase_I WXS none Illumina GAIIx cda7efe2-081f-427a-b863-c894647a16cf 9d8cc8bc-2c5a-42b2-9b91-8bbf43ca81bb GTAGGATTGGGCCTGGGGATG 0.572 5 54 ADCY3 109 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 2 25062839 25062839 + Missense_Mutation SNP C C T TCGA-DU-7302-01A-11D-2086-08 TCGA-DU-7302-10A-01D-2086-08 Untested Somatic Phase_I WXS none Illumina GAIIx cda7efe2-081f-427a-b863-c894647a16cf 9d8cc8bc-2c5a-42b2-9b91-8bbf43ca81bb CCCCCCAGCACGGTGCCCGTG 0.642 18 132 TRIM54 57159 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 2 27522276 27522276 + Missense_Mutation SNP C C T TCGA-DU-7302-01A-11D-2086-08 TCGA-DU-7302-10A-01D-2086-08 Untested Somatic Phase_I WXS none Illumina GAIIx cda7efe2-081f-427a-b863-c894647a16cf 9d8cc8bc-2c5a-42b2-9b91-8bbf43ca81bb CATTTACAAACGCCAGAAGGT 0.522 16 28 IDH1 3417 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 2 209113112 209113112 + Missense_Mutation SNP C C T rs121913500 TCGA-DU-7302-01A-11D-2086-08 TCGA-DU-7302-10A-01D-2086-08 Untested Somatic Phase_I WXS none Illumina GAIIx cda7efe2-081f-427a-b863-c894647a16cf 9d8cc8bc-2c5a-42b2-9b91-8bbf43ca81bb ATAAGCATGACGACCTATGAT 0.393 41 72 FLNB 2317 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 3 58095050 58095050 + Splice_Site SNP G G C TCGA-DU-7302-01A-11D-2086-08 TCGA-DU-7302-10A-01D-2086-08 Untested Somatic Phase_I WXS none Illumina GAIIx cda7efe2-081f-427a-b863-c894647a16cf 9d8cc8bc-2c5a-42b2-9b91-8bbf43ca81bb CCCCTACAGGGTAGGTTGTGA 0.552 8 13 SUMF2 25870 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 7 56145816 56145816 + Nonsense_Mutation SNP A A T TCGA-DU-7302-01A-11D-2086-08 TCGA-DU-7302-10A-01D-2086-08 Untested Somatic Phase_I WXS none Illumina GAIIx cda7efe2-081f-427a-b863-c894647a16cf 9d8cc8bc-2c5a-42b2-9b91-8bbf43ca81bb CAAGGGAGACAAAGCTGAGGA 0.532 17 156 KLHL15 80311 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 X 24006740 24006740 + Silent SNP T T C TCGA-DU-7302-01A-11D-2086-08 TCGA-DU-7302-10A-01D-2086-08 Untested Somatic Phase_I WXS none Illumina GAIIx cda7efe2-081f-427a-b863-c894647a16cf 9d8cc8bc-2c5a-42b2-9b91-8bbf43ca81bb CTACAGCAAATTCAGAGCGTG 0.458 103 135 SOX3 6658 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 X 139586763 139586763 + Missense_Mutation SNP G G A TCGA-DU-7302-01A-11D-2086-08 TCGA-DU-7302-10A-01D-2086-08 Untested Somatic Phase_I WXS none Illumina GAIIx cda7efe2-081f-427a-b863-c894647a16cf 9d8cc8bc-2c5a-42b2-9b91-8bbf43ca81bb GCCATTTTGCGCCGCTGCCCG 0.632 39 43 FLNA 2316 hgsc.bcm.edu;broad.mit.edu 37 X 153593776 153593776 + Missense_Mutation SNP A A T TCGA-DU-7302-01A-11D-2086-08 TCGA-DU-7302-10A-01D-2086-08 Untested Somatic Phase_I WXS none Illumina GAIIx cda7efe2-081f-427a-b863-c894647a16cf 9d8cc8bc-2c5a-42b2-9b91-8bbf43ca81bb GTACACCTTGAAGTCAGCTGT 0.672 9 103 APOB 338 broad.mit.edu;ucsc.edu 37 2 21227213 21227213 + Silent SNP G G A TCGA-DU-7302-01A-11D-2086-08 TCGA-DU-7302-10A-01D-2086-08 Untested Somatic Phase_I WXS none Illumina GAIIx cda7efe2-081f-427a-b863-c894647a16cf 9d8cc8bc-2c5a-42b2-9b91-8bbf43ca81bb CGGTGCCTACGGCTGGGGAGG 0.507 38 40 KRT16P2 400578 broad.mit.edu;ucsc.edu 37 17 16734855 16734855 + RNA SNP C C T rs688852 by1000genomes TCGA-DU-7302-01A-11D-2086-08 TCGA-DU-7302-10A-01D-2086-08 Untested Somatic Phase_I WXS none Illumina GAIIx cda7efe2-081f-427a-b863-c894647a16cf 9d8cc8bc-2c5a-42b2-9b91-8bbf43ca81bb CACAGTCTGCCGCAGGGCCAG 0.632 6 53 MYH2 4620 broad.mit.edu;ucsc.edu 37 17 10432336 10432336 + Missense_Mutation SNP C C T TCGA-DU-7302-01A-11D-2086-08 TCGA-DU-7302-10A-01D-2086-08 Untested Somatic Phase_I WXS none Illumina GAIIx cda7efe2-081f-427a-b863-c894647a16cf 9d8cc8bc-2c5a-42b2-9b91-8bbf43ca81bb CGCTGCTTCTCTGCTTTGGCC 0.582 33 74 ZNF292 23036 broad.mit.edu;hgsc.bcm.edu 37 6 87966376 87966377 + Frame_Shift_Del DEL CT CT - TCGA-DU-7302-01A-11D-2086-08 TCGA-DU-7302-10A-01D-2086-08 Untested Somatic Phase_I WXS none Illumina GAIIx cda7efe2-081f-427a-b863-c894647a16cf 9d8cc8bc-2c5a-42b2-9b91-8bbf43ca81bb AATTCAGAAACTCTCAAAATAG 0.356 11 28 SPDYE1 285955 broad.mit.edu;hgsc.bcm.edu 37 7 44042300 44042301 + Frame_Shift_Del DEL CT CT - TCGA-DU-7302-01A-11D-2086-08 TCGA-DU-7302-10A-01D-2086-08 Untested Somatic Phase_I WXS none Illumina GAIIx cda7efe2-081f-427a-b863-c894647a16cf 9d8cc8bc-2c5a-42b2-9b91-8bbf43ca81bb GTGCTCGCCCCTGAGCCTGAGG 0.614 19 50 GNAI1 2770 broad.mit.edu;hgsc.bcm.edu 37 7 79846804 79846805 + Frame_Shift_Del DEL TT TT - TCGA-DU-7302-01A-11D-2086-08 TCGA-DU-7302-10A-01D-2086-08 Untested Somatic Phase_I WXS none Illumina GAIIx cda7efe2-081f-427a-b863-c894647a16cf 9d8cc8bc-2c5a-42b2-9b91-8bbf43ca81bb TTGTGGTCTCTTTTAAGTTTTG 0.342 13 28 NOTCH1 4851 broad.mit.edu;hgsc.bcm.edu 37 9 139413070 139413072 + In_Frame_Del DEL AGA AGA - TCGA-DU-7302-01A-11D-2086-08 TCGA-DU-7302-10A-01D-2086-08 Untested Somatic Phase_I WXS none Illumina GAIIx cda7efe2-081f-427a-b863-c894647a16cf 9d8cc8bc-2c5a-42b2-9b91-8bbf43ca81bb CACTCGCAGTAGAAGGAGGCCAC 0.655 10 20 ANO9 338440 broad.mit.edu;hgsc.bcm.edu 37 11 418481 418483 + In_Frame_Del DEL TCT TCT - TCGA-DU-7302-01A-11D-2086-08 TCGA-DU-7302-10A-01D-2086-08 Untested Somatic Phase_I WXS none Illumina GAIIx cda7efe2-081f-427a-b863-c894647a16cf 9d8cc8bc-2c5a-42b2-9b91-8bbf43ca81bb CCATGCCACATCTTCTCACGCAG 0.621 51 105 CLUH 23277 broad.mit.edu;hgsc.bcm.edu 37 17 2601759 2601761 + In_Frame_Del DEL GAA GAA - TCGA-DU-7302-01A-11D-2086-08 TCGA-DU-7302-10A-01D-2086-08 Untested Somatic Phase_I WXS none Illumina GAIIx cda7efe2-081f-427a-b863-c894647a16cf 9d8cc8bc-2c5a-42b2-9b91-8bbf43ca81bb AGCCCAGGCTGAAGAAGATGTTG 0.611 11 48 CIC 23152 broad.mit.edu;hgsc.bcm.edu 37 19 42798099 42798100 + Frame_Shift_Del DEL AG AG - TCGA-DU-7302-01A-11D-2086-08 TCGA-DU-7302-10A-01D-2086-08 Untested Somatic Phase_I WXS none Illumina GAIIx cda7efe2-081f-427a-b863-c894647a16cf 9d8cc8bc-2c5a-42b2-9b91-8bbf43ca81bb GGGTCCTGTCAGAAGTGGACTT 0.678 64 73 NKX2-2 4821 broad.mit.edu;hgsc.bcm.edu 37 20 21492574 21492574 + Frame_Shift_Del DEL T T - TCGA-DU-7302-01A-11D-2086-08 TCGA-DU-7302-10A-01D-2086-08 Untested Somatic Phase_I WXS none Illumina GAIIx cda7efe2-081f-427a-b863-c894647a16cf 9d8cc8bc-2c5a-42b2-9b91-8bbf43ca81bb CCAAGTCCACTGCTGGGCCTG 0.706 34 36 BCOR 54880 broad.mit.edu;hgsc.bcm.edu 37 X 39932365 39932366 + Frame_Shift_Del DEL CT CT - TCGA-DU-7302-01A-11D-2086-08 TCGA-DU-7302-10A-01D-2086-08 Untested Somatic Phase_I WXS none Illumina GAIIx cda7efe2-081f-427a-b863-c894647a16cf 9d8cc8bc-2c5a-42b2-9b91-8bbf43ca81bb CCGGGATCTCCTCTCTGGTTTC 0.515 53 131