Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_file Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID ref_context gc_content t_alt_count t_ref_count SCD 6319 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 10 102112184 102112184 + Silent SNP C C T TCGA-DU-7309-01A-11D-2086-08 TCGA-DU-7309-10A-01D-2086-08 Untested Somatic Phase_I WXS none Illumina GAIIx b47b5427-1159-4b16-a9b5-814d4e7dcffa 1125ff76-1f9b-4396-a4bb-cff53b6dd447 GTCTGTGGAGCCACCGCTCTT 0.522 88 144 SLC39A13 91252 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 11 47434972 47434972 + Missense_Mutation SNP G G A TCGA-DU-7309-01A-11D-2086-08 TCGA-DU-7309-10A-01D-2086-08 Untested Somatic Phase_I WXS none Illumina GAIIx b47b5427-1159-4b16-a9b5-814d4e7dcffa 1125ff76-1f9b-4396-a4bb-cff53b6dd447 AGACCCCACTGCTGCTGCCGC 0.657 17 44 KRT6C 286887 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 12 52863046 52863046 + Missense_Mutation SNP C C T rs140943956 byFrequency TCGA-DU-7309-01A-11D-2086-08 TCGA-DU-7309-10A-01D-2086-08 Untested Somatic Phase_I WXS none Illumina GAIIx b47b5427-1159-4b16-a9b5-814d4e7dcffa 1125ff76-1f9b-4396-a4bb-cff53b6dd447 CCGCTGGCACCGCCATAGCCA 0.612 7 33 PA2G4 5036 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 12 56501319 56501319 + Silent SNP A A G TCGA-DU-7309-01A-11D-2086-08 TCGA-DU-7309-10A-01D-2086-08 Untested Somatic Phase_I WXS none Illumina GAIIx b47b5427-1159-4b16-a9b5-814d4e7dcffa 1125ff76-1f9b-4396-a4bb-cff53b6dd447 CCCAAGTAACAGGGAGGAAAG 0.453 24 169 BNIP2 663 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 15 59961125 59961125 + Missense_Mutation SNP T T C TCGA-DU-7309-01A-11D-2086-08 TCGA-DU-7309-10A-01D-2086-08 Untested Somatic Phase_I WXS none Illumina GAIIx b47b5427-1159-4b16-a9b5-814d4e7dcffa 1125ff76-1f9b-4396-a4bb-cff53b6dd447 ACGTATTCCATGGGGACAAGT 0.308 40 64 TLN2 83660 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 15 63127959 63127959 + Silent SNP T T C TCGA-DU-7309-01A-11D-2086-08 TCGA-DU-7309-10A-01D-2086-08 Untested Somatic Phase_I WXS none Illumina GAIIx b47b5427-1159-4b16-a9b5-814d4e7dcffa 1125ff76-1f9b-4396-a4bb-cff53b6dd447 CTGCCAATGCTGCAGACGACG 0.602 54 257 IDH2 3418 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 15 90631837 90631837 + Missense_Mutation SNP C C A TCGA-DU-7309-01A-11D-2086-08 TCGA-DU-7309-10A-01D-2086-08 Untested Somatic Phase_I WXS none Illumina GAIIx b47b5427-1159-4b16-a9b5-814d4e7dcffa 1125ff76-1f9b-4396-a4bb-cff53b6dd447 CATGGGCGTGCCTGCCAATGG 0.637 28 49 FAM57B 83723 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 16 30037991 30037991 + Missense_Mutation SNP T T C TCGA-DU-7309-01A-11D-2086-08 TCGA-DU-7309-10A-01D-2086-08 Untested Somatic Phase_I WXS none Illumina GAIIx b47b5427-1159-4b16-a9b5-814d4e7dcffa 1125ff76-1f9b-4396-a4bb-cff53b6dd447 GAGGAACTCCTTGTGCAGGTA 0.677 22 55 GNAO1 2775 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 16 56226231 56226231 + Missense_Mutation SNP C C G TCGA-DU-7309-01A-11D-2086-08 TCGA-DU-7309-10A-01D-2086-08 Untested Somatic Phase_I WXS none Illumina GAIIx b47b5427-1159-4b16-a9b5-814d4e7dcffa 1125ff76-1f9b-4396-a4bb-cff53b6dd447 AGGATGGCATCAGCGCCGCCA 0.637 37 42 TP53 7157 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 17 7577538 7577538 + Missense_Mutation SNP C C T rs11540652 TCGA-DU-7309-01A-11D-2086-08 TCGA-DU-7309-10A-01D-2086-08 Untested Somatic Phase_I WXS none Illumina GAIIx b47b5427-1159-4b16-a9b5-814d4e7dcffa 1125ff76-1f9b-4396-a4bb-cff53b6dd447 GATGGGCCTCCGGTTCATGCC 0.572 74 43 EPB41L3 23136 hgsc.bcm.edu;broad.mit.edu 37 18 5397173 5397173 + Missense_Mutation SNP C C G TCGA-DU-7309-01A-11D-2086-08 TCGA-DU-7309-10A-01D-2086-08 Untested Somatic Phase_I WXS none Illumina GAIIx b47b5427-1159-4b16-a9b5-814d4e7dcffa 1125ff76-1f9b-4396-a4bb-cff53b6dd447 GCTTTAGCGACCTCCTCCCCT 0.567 8 134 VAV1 7409 hgsc.bcm.edu;broad.mit.edu 37 19 6828446 6828446 + Missense_Mutation SNP C C T TCGA-DU-7309-01A-11D-2086-08 TCGA-DU-7309-10A-01D-2086-08 Untested Somatic Phase_I WXS none Illumina GAIIx b47b5427-1159-4b16-a9b5-814d4e7dcffa 1125ff76-1f9b-4396-a4bb-cff53b6dd447 GTGAAACACACGCAGGAGGCG 0.622 6 69 OVGP1 5016 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 1 111966210 111966210 + Missense_Mutation SNP T T A TCGA-DU-7309-01A-11D-2086-08 TCGA-DU-7309-10A-01D-2086-08 Untested Somatic Phase_I WXS none Illumina GAIIx b47b5427-1159-4b16-a9b5-814d4e7dcffa 1125ff76-1f9b-4396-a4bb-cff53b6dd447 TGGGGCTGCCTCTTAGTCCAG 0.403 21 56 PGLYRP4 57115 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 1 153315567 153315567 + Splice_Site SNP T T C TCGA-DU-7309-01A-11D-2086-08 TCGA-DU-7309-10A-01D-2086-08 Untested Somatic Phase_I WXS none Illumina GAIIx b47b5427-1159-4b16-a9b5-814d4e7dcffa 1125ff76-1f9b-4396-a4bb-cff53b6dd447 AACTGTTACCTTTCTTAGTGC 0.478 21 30 PYGB 5834 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 20 25261592 25261592 + Missense_Mutation SNP C C G TCGA-DU-7309-01A-11D-2086-08 TCGA-DU-7309-10A-01D-2086-08 Untested Somatic Phase_I WXS none Illumina GAIIx b47b5427-1159-4b16-a9b5-814d4e7dcffa 1125ff76-1f9b-4396-a4bb-cff53b6dd447 CAGCACGTGGCCGCGCTGTTT 0.647 28 185 PPP1CB 5500 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 2 29016792 29016792 + Missense_Mutation SNP A A T TCGA-DU-7309-01A-11D-2086-08 TCGA-DU-7309-10A-01D-2086-08 Untested Somatic Phase_I WXS none Illumina GAIIx b47b5427-1159-4b16-a9b5-814d4e7dcffa 1125ff76-1f9b-4396-a4bb-cff53b6dd447 TTCAGCCCCAAATTACTGTGG 0.348 17 51 CEP68 23177 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 2 65296819 65296819 + Missense_Mutation SNP C C G TCGA-DU-7309-01A-11D-2086-08 TCGA-DU-7309-10A-01D-2086-08 Untested Somatic Phase_I WXS none Illumina GAIIx b47b5427-1159-4b16-a9b5-814d4e7dcffa 1125ff76-1f9b-4396-a4bb-cff53b6dd447 AGCCCACCAGCCACAGGCCAG 0.632 12 68 CXCR2 3579 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 2 218999633 218999633 + Missense_Mutation SNP G G A rs75759064 by1000genomes TCGA-DU-7309-01A-11D-2086-08 TCGA-DU-7309-10A-01D-2086-08 Untested Somatic Phase_I WXS none Illumina GAIIx b47b5427-1159-4b16-a9b5-814d4e7dcffa 1125ff76-1f9b-4396-a4bb-cff53b6dd447 ACTAGATGCCGCCCCATGTGA 0.448 72 147 SEMA6A 57556 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 5 115803413 115803413 + Missense_Mutation SNP G G C TCGA-DU-7309-01A-11D-2086-08 TCGA-DU-7309-10A-01D-2086-08 Untested Somatic Phase_I WXS none Illumina GAIIx b47b5427-1159-4b16-a9b5-814d4e7dcffa 1125ff76-1f9b-4396-a4bb-cff53b6dd447 ATCTGATGTGGTTGTGCTGGG 0.522 15 33 GABRA6 2559 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 5 161128598 161128598 + Missense_Mutation SNP C C T TCGA-DU-7309-01A-11D-2086-08 TCGA-DU-7309-10A-01D-2086-08 Untested Somatic Phase_I WXS none Illumina GAIIx b47b5427-1159-4b16-a9b5-814d4e7dcffa 1125ff76-1f9b-4396-a4bb-cff53b6dd447 CTCACGAGAGCGCCCATCTTA 0.473 19 62 ABHD16A 7920 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 6 31668779 31668779 + Missense_Mutation SNP G G A TCGA-DU-7309-01A-11D-2086-08 TCGA-DU-7309-10A-01D-2086-08 Untested Somatic Phase_I WXS none Illumina GAIIx b47b5427-1159-4b16-a9b5-814d4e7dcffa 1125ff76-1f9b-4396-a4bb-cff53b6dd447 TGAGAAAACGGCACCACTTTG 0.537 17 79 ZNF318 24149 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 6 43310590 43310590 + Missense_Mutation SNP G G A rs147313268 byFrequency TCGA-DU-7309-01A-11D-2086-08 TCGA-DU-7309-10A-01D-2086-08 Untested Somatic Phase_I WXS none Illumina GAIIx b47b5427-1159-4b16-a9b5-814d4e7dcffa 1125ff76-1f9b-4396-a4bb-cff53b6dd447 CTCTTAGTACGAAACTTCTCA 0.433 6 38 PCMT1 5110 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 6 150111138 150111138 + Missense_Mutation SNP A A G TCGA-DU-7309-01A-11D-2086-08 TCGA-DU-7309-10A-01D-2086-08 Untested Somatic Phase_I WXS none Illumina GAIIx b47b5427-1159-4b16-a9b5-814d4e7dcffa 1125ff76-1f9b-4396-a4bb-cff53b6dd447 TGAAGGAGCTAAAGCTCTTGA 0.378 58 105 C7orf10 0 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 7 40899974 40899974 + Missense_Mutation SNP G G A TCGA-DU-7309-01A-11D-2086-08 TCGA-DU-7309-10A-01D-2086-08 Untested Somatic Phase_I WXS none Illumina GAIIx b47b5427-1159-4b16-a9b5-814d4e7dcffa 1125ff76-1f9b-4396-a4bb-cff53b6dd447 CCCGCTGCTCGGGCAGCACAC 0.567 40 179 MUC17 140453 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 7 100696423 100696423 + Silent SNP G G C TCGA-DU-7309-01A-11D-2086-08 TCGA-DU-7309-10A-01D-2086-08 Untested Somatic Phase_I WXS none Illumina GAIIx b47b5427-1159-4b16-a9b5-814d4e7dcffa 1125ff76-1f9b-4396-a4bb-cff53b6dd447 AGAGAGAGGTGAAACGGTGAG 0.567 8 29 MYOM2 9172 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 8 2040226 2040226 + Silent SNP G G A TCGA-DU-7309-01A-11D-2086-08 TCGA-DU-7309-10A-01D-2086-08 Untested Somatic Phase_I WXS none Illumina GAIIx b47b5427-1159-4b16-a9b5-814d4e7dcffa 1125ff76-1f9b-4396-a4bb-cff53b6dd447 CCAAGACGTCGGTGGTGGTGC 0.577 16 212 TEX11 56159 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 X 70073157 70073157 + Nonsense_Mutation SNP C C A TCGA-DU-7309-01A-11D-2086-08 TCGA-DU-7309-10A-01D-2086-08 Untested Somatic Phase_I WXS none Illumina GAIIx b47b5427-1159-4b16-a9b5-814d4e7dcffa 1125ff76-1f9b-4396-a4bb-cff53b6dd447 TCCAACCATTCTTTTCCTATT 0.343 17 49 ATRX 546 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 X 76813014 76813014 + Nonsense_Mutation SNP C C A TCGA-DU-7309-01A-11D-2086-08 TCGA-DU-7309-10A-01D-2086-08 Untested Somatic Phase_I WXS none Illumina GAIIx b47b5427-1159-4b16-a9b5-814d4e7dcffa 1125ff76-1f9b-4396-a4bb-cff53b6dd447 TCAGTAAGCTCATTCATAGTA 0.393 50 69 ACSM1 116285 broad.mit.edu;ucsc.edu 37 16 20648161 20648161 + Missense_Mutation SNP A A G TCGA-DU-7309-01A-11D-2086-08 TCGA-DU-7309-10A-01D-2086-08 Untested Somatic Phase_I WXS none Illumina GAIIx b47b5427-1159-4b16-a9b5-814d4e7dcffa 1125ff76-1f9b-4396-a4bb-cff53b6dd447 GTCATCAATGACCTGTAGCAA 0.527 22 48 UGT2B11 10720 broad.mit.edu;ucsc.edu 37 4 70080096 70080096 + Silent SNP G G A TCGA-DU-7309-01A-11D-2086-08 TCGA-DU-7309-10A-01D-2086-08 Untested Somatic Phase_I WXS none Illumina GAIIx b47b5427-1159-4b16-a9b5-814d4e7dcffa 1125ff76-1f9b-4396-a4bb-cff53b6dd447 ATTCCCACAGGATTTCTTGTT 0.299 7 25 CEP68 23177 broad.mit.edu;ucsc.edu 37 2 65296821 65296821 + Silent SNP A A G TCGA-DU-7309-01A-11D-2086-08 TCGA-DU-7309-10A-01D-2086-08 Untested Somatic Phase_I WXS none Illumina GAIIx b47b5427-1159-4b16-a9b5-814d4e7dcffa 1125ff76-1f9b-4396-a4bb-cff53b6dd447 CCCACCAGCCACAGGCCAGTG 0.632 11 60 ERC1 23085 broad.mit.edu;ucsc.edu 37 12 1219448 1219448 + Missense_Mutation SNP G G A TCGA-DU-7309-01A-11D-2086-08 TCGA-DU-7309-10A-01D-2086-08 Untested Somatic Phase_I WXS none Illumina GAIIx b47b5427-1159-4b16-a9b5-814d4e7dcffa 1125ff76-1f9b-4396-a4bb-cff53b6dd447 GAGTACTGAGGAAAGGGAAGA 0.388 6 61 ZACN 353174 broad.mit.edu;hgsc.bcm.edu 37 17 74076491 74076492 + Frame_Shift_Del DEL CT CT - TCGA-DU-7309-01A-11D-2086-08 TCGA-DU-7309-10A-01D-2086-08 Untested Somatic Phase_I WXS none Illumina GAIIx b47b5427-1159-4b16-a9b5-814d4e7dcffa 1125ff76-1f9b-4396-a4bb-cff53b6dd447 AGCTTCTACGCTCTCAGCAACA 0.644 60 93