Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_file Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID ref_context gc_content t_alt_count t_ref_count KIAA1462 57608 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 10 30315252 30315252 + Silent SNP G G A TCGA-DU-8161-01A-11D-2253-08 TCGA-DU-8161-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx 54d2b413-5a8a-43c7-b8dc-60d3ebd5afce aea196d9-761d-4e84-b568-ad9c58926643 CATTCCTGAAGCTCAGGACTC 0.612 16 31 PTEN 5728 hgsc.bcm.edu;ucsc.edu 37 10 89692904 89692904 + Nonsense_Mutation SNP C C T rs121913292 TCGA-DU-8161-01A-11D-2253-08 TCGA-DU-8161-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx 54d2b413-5a8a-43c7-b8dc-60d3ebd5afce aea196d9-761d-4e84-b568-ad9c58926643 TGGAAAGGGACGAACTGGTGT 0.403 73 128 CYP2C19 1557 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 10 96535209 96535209 + Missense_Mutation SNP C C T rs149590953 TCGA-DU-8161-01A-11D-2253-08 TCGA-DU-8161-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx 54d2b413-5a8a-43c7-b8dc-60d3ebd5afce aea196d9-761d-4e84-b568-ad9c58926643 CATGACGCTGCGGAATTTTGG 0.507 45 69 CYP2C8 1558 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 10 96818194 96818194 + Silent SNP A A G TCGA-DU-8161-01A-11D-2253-08 TCGA-DU-8161-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx 54d2b413-5a8a-43c7-b8dc-60d3ebd5afce aea196d9-761d-4e84-b568-ad9c58926643 AACTTCGTGTAAGAGCAACAT 0.363 11 22 ANO9 338440 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 11 429619 429619 + Missense_Mutation SNP C C T TCGA-DU-8161-01A-11D-2253-08 TCGA-DU-8161-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx 54d2b413-5a8a-43c7-b8dc-60d3ebd5afce aea196d9-761d-4e84-b568-ad9c58926643 CACGCGGGCGCGCTGCCGCTT 0.687 19 63 UBQLN3 50613 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 11 5530632 5530632 + Missense_Mutation SNP G G A rs143866662 TCGA-DU-8161-01A-11D-2253-08 TCGA-DU-8161-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx 54d2b413-5a8a-43c7-b8dc-60d3ebd5afce aea196d9-761d-4e84-b568-ad9c58926643 GCCTTAAAGCGCTGAGATATC 0.507 62 167 OR52N2 390077 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 11 5841699 5841699 + Missense_Mutation SNP G G C TCGA-DU-8161-01A-11D-2253-08 TCGA-DU-8161-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx 54d2b413-5a8a-43c7-b8dc-60d3ebd5afce aea196d9-761d-4e84-b568-ad9c58926643 GTGGGGAACTGTGGGCTCATC 0.547 20 74 AVPR1A 552 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 12 63543919 63543919 + Missense_Mutation SNP C C T TCGA-DU-8161-01A-11D-2253-08 TCGA-DU-8161-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx 54d2b413-5a8a-43c7-b8dc-60d3ebd5afce aea196d9-761d-4e84-b568-ad9c58926643 GTAGCAGGTACCCAAGATGAC 0.642 42 99 FLVCR2 55640 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 14 76101273 76101273 + Silent SNP A A G TCGA-DU-8161-01A-11D-2253-08 TCGA-DU-8161-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx 54d2b413-5a8a-43c7-b8dc-60d3ebd5afce aea196d9-761d-4e84-b568-ad9c58926643 TGAATGCTGGAAGAATTGGCC 0.527 5 36 CHRNB4 1143 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 15 78921630 78921630 + Missense_Mutation SNP G G T TCGA-DU-8161-01A-11D-2253-08 TCGA-DU-8161-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx 54d2b413-5a8a-43c7-b8dc-60d3ebd5afce aea196d9-761d-4e84-b568-ad9c58926643 TAGGCAGCTTGTGCAGGAAGC 0.642 13 40 RASGRF1 5923 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 15 79277481 79277481 + Silent SNP G G A TCGA-DU-8161-01A-11D-2253-08 TCGA-DU-8161-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx 54d2b413-5a8a-43c7-b8dc-60d3ebd5afce aea196d9-761d-4e84-b568-ad9c58926643 CCCACTTCTCGATGGCGCTCA 0.517 34 166 ANKFY1 51479 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 17 4088255 4088255 + Silent SNP C C G TCGA-DU-8161-01A-11D-2253-08 TCGA-DU-8161-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx 54d2b413-5a8a-43c7-b8dc-60d3ebd5afce aea196d9-761d-4e84-b568-ad9c58926643 CCTCCGTCTGCAGGTTTGGGT 0.622 15 75 KCNJ2 3759 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 17 68171457 68171457 + Missense_Mutation SNP G G A rs147750704 TCGA-DU-8161-01A-11D-2253-08 TCGA-DU-8161-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx 54d2b413-5a8a-43c7-b8dc-60d3ebd5afce aea196d9-761d-4e84-b568-ad9c58926643 CCTGGCTTTCGTCCTGTCATG 0.537 46 160 ALPK2 115701 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 18 56246388 56246388 + Silent SNP C C T TCGA-DU-8161-01A-11D-2253-08 TCGA-DU-8161-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx 54d2b413-5a8a-43c7-b8dc-60d3ebd5afce aea196d9-761d-4e84-b568-ad9c58926643 CCTTCATTCCCGGCTGCCTCA 0.542 59 226 FBN3 84467 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 19 8136967 8136967 + Missense_Mutation SNP C C A TCGA-DU-8161-01A-11D-2253-08 TCGA-DU-8161-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx 54d2b413-5a8a-43c7-b8dc-60d3ebd5afce aea196d9-761d-4e84-b568-ad9c58926643 CGTGGCCGGTCCCGAGGGGAG 0.642 32 112 IGFL2 147920 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 19 46664038 46664038 + Missense_Mutation SNP C C G TCGA-DU-8161-01A-11D-2253-08 TCGA-DU-8161-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx 54d2b413-5a8a-43c7-b8dc-60d3ebd5afce aea196d9-761d-4e84-b568-ad9c58926643 GCTCTGCTGTCTTGATTCCTT 0.527 77 323 LILRA3 11026 hgsc.bcm.edu;broad.mit.edu 37 19 54802564 54802564 + Missense_Mutation SNP C C T TCGA-DU-8161-01A-11D-2253-08 TCGA-DU-8161-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx 54d2b413-5a8a-43c7-b8dc-60d3ebd5afce aea196d9-761d-4e84-b568-ad9c58926643 GTGTACTGGCCCCCGTAGGAG 0.682 31 83 PRAMEF12 390999 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 1 12837725 12837725 + Nonsense_Mutation SNP C C T TCGA-DU-8161-01A-11D-2253-08 TCGA-DU-8161-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx 54d2b413-5a8a-43c7-b8dc-60d3ebd5afce aea196d9-761d-4e84-b568-ad9c58926643 TGCCTGCTGTCAGGGTGGATT 0.507 22 58 ITLN1 55600 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 1 160849160 160849160 + Missense_Mutation SNP C C T TCGA-DU-8161-01A-11D-2253-08 TCGA-DU-8161-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx 54d2b413-5a8a-43c7-b8dc-60d3ebd5afce aea196d9-761d-4e84-b568-ad9c58926643 GCTGCTCTCTCGTTATTAAAT 0.488 32 100 ASTN1 460 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 1 176838145 176838145 + Missense_Mutation SNP T T C TCGA-DU-8161-01A-11D-2253-08 TCGA-DU-8161-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx 54d2b413-5a8a-43c7-b8dc-60d3ebd5afce aea196d9-761d-4e84-b568-ad9c58926643 GAAGAGATTGTAGATCTTGTC 0.403 30 85 PTPRC 5788 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 1 198703516 198703516 + Missense_Mutation SNP G G C TCGA-DU-8161-01A-11D-2253-08 TCGA-DU-8161-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx 54d2b413-5a8a-43c7-b8dc-60d3ebd5afce aea196d9-761d-4e84-b568-ad9c58926643 GAAAGCCACAGTTATTGTCAT 0.408 128 405 IL20 50604 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 1 207039239 207039239 + Silent SNP G G A TCGA-DU-8161-01A-11D-2253-08 TCGA-DU-8161-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx 54d2b413-5a8a-43c7-b8dc-60d3ebd5afce aea196d9-761d-4e84-b568-ad9c58926643 TCTCTGCTGCGTTTTATCTCC 0.458 19 74 ENAH 55740 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 1 225706962 225706962 + Missense_Mutation SNP C C T TCGA-DU-8161-01A-11D-2253-08 TCGA-DU-8161-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx 54d2b413-5a8a-43c7-b8dc-60d3ebd5afce aea196d9-761d-4e84-b568-ad9c58926643 CTGCTCTTGTCGCTCCCTTTC 0.517 131 323 TM9SF4 9777 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 20 30723918 30723918 + Silent SNP A A G TCGA-DU-8161-01A-11D-2253-08 TCGA-DU-8161-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx 54d2b413-5a8a-43c7-b8dc-60d3ebd5afce aea196d9-761d-4e84-b568-ad9c58926643 TACCTTATGAATACTATTCAC 0.512 31 104 ADD2 119 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 2 70904917 70904917 + Silent SNP G G C TCGA-DU-8161-01A-11D-2253-08 TCGA-DU-8161-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx 54d2b413-5a8a-43c7-b8dc-60d3ebd5afce aea196d9-761d-4e84-b568-ad9c58926643 GTACTTCCTGGGGGTCAGTAT 0.522 16 67 HJURP 55355 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 2 234750028 234750028 + Missense_Mutation SNP C C G TCGA-DU-8161-01A-11D-2253-08 TCGA-DU-8161-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx 54d2b413-5a8a-43c7-b8dc-60d3ebd5afce aea196d9-761d-4e84-b568-ad9c58926643 CCCCTCTGTACATGTTCATGG 0.532 45 78 FGD5 152273 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 3 14939167 14939167 + Missense_Mutation SNP T T C TCGA-DU-8161-01A-11D-2253-08 TCGA-DU-8161-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx 54d2b413-5a8a-43c7-b8dc-60d3ebd5afce aea196d9-761d-4e84-b568-ad9c58926643 GAGGAAAGGCTGTCAAATTGG 0.547 5 20 POU1F1 5449 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 3 87322565 87322565 + Missense_Mutation SNP G G T TCGA-DU-8161-01A-11D-2253-08 TCGA-DU-8161-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx 54d2b413-5a8a-43c7-b8dc-60d3ebd5afce aea196d9-761d-4e84-b568-ad9c58926643 ATGAAGTCCTGTTGCTGTGTT 0.383 16 81 TLR1 7096 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 4 38798156 38798156 + Missense_Mutation SNP C C T TCGA-DU-8161-01A-11D-2253-08 TCGA-DU-8161-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx 54d2b413-5a8a-43c7-b8dc-60d3ebd5afce aea196d9-761d-4e84-b568-ad9c58926643 CCAAAAAAGGCCACGTTTGCT 0.423 14 36 TEC 7006 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 4 48173432 48173432 + Missense_Mutation SNP G G C TCGA-DU-8161-01A-11D-2253-08 TCGA-DU-8161-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx 54d2b413-5a8a-43c7-b8dc-60d3ebd5afce aea196d9-761d-4e84-b568-ad9c58926643 TGGACTAGGTGCAAAAATGTA 0.353 24 90 FLT4 2324 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 5 180047927 180047927 + Missense_Mutation SNP C C T TCGA-DU-8161-01A-11D-2253-08 TCGA-DU-8161-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx 54d2b413-5a8a-43c7-b8dc-60d3ebd5afce aea196d9-761d-4e84-b568-ad9c58926643 GCGTTGCACACGCTGCACAGA 0.657 4 22 MB21D1 115004 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 6 74135195 74135195 + Missense_Mutation SNP A A C TCGA-DU-8161-01A-11D-2253-08 TCGA-DU-8161-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx 54d2b413-5a8a-43c7-b8dc-60d3ebd5afce aea196d9-761d-4e84-b568-ad9c58926643 ACGTGAAAGAAGGCAGTTTTC 0.393 13 34 IKZF1 10320 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 7 50459521 50459521 + Silent SNP C C T TCGA-DU-8161-01A-11D-2253-08 TCGA-DU-8161-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx 54d2b413-5a8a-43c7-b8dc-60d3ebd5afce aea196d9-761d-4e84-b568-ad9c58926643 TAGCAAGTAACGTCGCCAAAC 0.393 8 37 PCLO 27445 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 7 82583644 82583644 + Missense_Mutation SNP C C A TCGA-DU-8161-01A-11D-2253-08 TCGA-DU-8161-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx 54d2b413-5a8a-43c7-b8dc-60d3ebd5afce aea196d9-761d-4e84-b568-ad9c58926643 TCTGTATAAACTGTGGTTATG 0.413 13 58 GPR22 2845 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 7 107114948 107114948 + Missense_Mutation SNP C C A TCGA-DU-8161-01A-11D-2253-08 TCGA-DU-8161-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx 54d2b413-5a8a-43c7-b8dc-60d3ebd5afce aea196d9-761d-4e84-b568-ad9c58926643 GTAAAACCTGCAAACCGAATT 0.358 39 128 HTR5A 3361 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 7 154863096 154863096 + Missense_Mutation SNP G G C TCGA-DU-8161-01A-11D-2253-08 TCGA-DU-8161-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx 54d2b413-5a8a-43c7-b8dc-60d3ebd5afce aea196d9-761d-4e84-b568-ad9c58926643 CGTCATGATCGCGCTCACCTG 0.627 22 106 NAT2 10 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 8 18257611 18257611 + Missense_Mutation SNP G G A rs138592670 TCGA-DU-8161-01A-11D-2253-08 TCGA-DU-8161-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx 54d2b413-5a8a-43c7-b8dc-60d3ebd5afce aea196d9-761d-4e84-b568-ad9c58926643 CACCAGATCCGGGCTGTTCCC 0.423 50 167 GLT6D1 360203 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 9 138530972 138530972 + Missense_Mutation SNP C C T TCGA-DU-8161-01A-11D-2253-08 TCGA-DU-8161-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx 54d2b413-5a8a-43c7-b8dc-60d3ebd5afce aea196d9-761d-4e84-b568-ad9c58926643 CCTGAAATAACGCTCAACCAA 0.264 8 66 LAS1L 81887 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 X 64752492 64752492 + Silent SNP T T C TCGA-DU-8161-01A-11D-2253-08 TCGA-DU-8161-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx 54d2b413-5a8a-43c7-b8dc-60d3ebd5afce aea196d9-761d-4e84-b568-ad9c58926643 TCTTCCTCTCTGAGATAAGAT 0.463 23 71 FTSJ1 24140 broad.mit.edu;ucsc.edu 37 X 48337056 48337056 + Silent SNP A A G TCGA-DU-8161-01A-11D-2253-08 TCGA-DU-8161-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx 54d2b413-5a8a-43c7-b8dc-60d3ebd5afce aea196d9-761d-4e84-b568-ad9c58926643 CTATGGCTCCACTACCAGGTG 0.617 5 24 ERG 2078 broad.mit.edu;ucsc.edu 37 21 39755664 39755664 + Silent SNP G G A rs143039786 TCGA-DU-8161-01A-11D-2253-08 TCGA-DU-8161-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx 54d2b413-5a8a-43c7-b8dc-60d3ebd5afce aea196d9-761d-4e84-b568-ad9c58926643 AACGGAGGGCGCGGCTGAGCT 0.592 30 87 OR52E4 390081 broad.mit.edu;ucsc.edu 37 11 5906225 5906225 + Nonsense_Mutation SNP C C T TCGA-DU-8161-01A-11D-2253-08 TCGA-DU-8161-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx 54d2b413-5a8a-43c7-b8dc-60d3ebd5afce aea196d9-761d-4e84-b568-ad9c58926643 TCAAGATGTCCGACTAAAGGC 0.398 54 131 TANGO6 79613 broad.mit.edu;ucsc.edu 37 16 68894308 68894308 + Missense_Mutation SNP G G T TCGA-DU-8161-01A-11D-2253-08 TCGA-DU-8161-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx 54d2b413-5a8a-43c7-b8dc-60d3ebd5afce aea196d9-761d-4e84-b568-ad9c58926643 TCTGAATGTTGCTCAGCACAC 0.517 59 229 SCN1A 6323 broad.mit.edu;ucsc.edu 37 2 166892601 166892601 + Missense_Mutation SNP G G A TCGA-DU-8161-01A-11D-2253-08 TCGA-DU-8161-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx 54d2b413-5a8a-43c7-b8dc-60d3ebd5afce aea196d9-761d-4e84-b568-ad9c58926643 AAAGTCTTCCGTGTTTAAATT 0.343 42 158 CLCNKB 1188 broad.mit.edu;ucsc.edu 37 1 16372121 16372121 + Missense_Mutation SNP G G A TCGA-DU-8161-01A-11D-2253-08 TCGA-DU-8161-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx 54d2b413-5a8a-43c7-b8dc-60d3ebd5afce aea196d9-761d-4e84-b568-ad9c58926643 GATGACCCTCGGGGTGCTCAT 0.637 21 86 ATP1A2 477 broad.mit.edu;hgsc.bcm.edu 37 1 160093068 160093069 + Frame_Shift_Ins INS - - C TCGA-DU-8161-01A-11D-2253-08 TCGA-DU-8161-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx 54d2b413-5a8a-43c7-b8dc-60d3ebd5afce aea196d9-761d-4e84-b568-ad9c58926643 TCACACCACCTCCCACAACCCC 0.629 60 237