Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_file Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID ref_context gc_content t_alt_count t_ref_count OPN4 94233 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 10 88418311 88418311 + Silent SNP C C T TCGA-DU-8162-01A-21D-2253-08 TCGA-DU-8162-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx 337b4f73-2891-4f94-a24e-a6022bc871da a92ca991-440e-4646-826f-2db2b4734fb2 CGGCCATCGCCCTGGACCGCT 0.612 8 81 IPO7 10527 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 11 9459665 9459665 + Missense_Mutation SNP C C G TCGA-DU-8162-01A-21D-2253-08 TCGA-DU-8162-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx 337b4f73-2891-4f94-a24e-a6022bc871da a92ca991-440e-4646-826f-2db2b4734fb2 GGACTCTGTGCTCTTATTGAT 0.308 5 107 NYNRIN 57523 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 14 24884570 24884570 + Silent SNP G G A TCGA-DU-8162-01A-21D-2253-08 TCGA-DU-8162-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx 337b4f73-2891-4f94-a24e-a6022bc871da a92ca991-440e-4646-826f-2db2b4734fb2 CCCAGTCAGGGGGTGACAGCC 0.622 13 95 NUTM1 256646 hgsc.bcm.edu;broad.mit.edu 37 15 34640382 34640382 + Missense_Mutation SNP G G A TCGA-DU-8162-01A-21D-2253-08 TCGA-DU-8162-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx 337b4f73-2891-4f94-a24e-a6022bc871da a92ca991-440e-4646-826f-2db2b4734fb2 AGGGGATGGGGGCCCTTGCCT 0.562 7 145 SGK494 124923 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 17 26939672 26939672 + Missense_Mutation SNP C C T TCGA-DU-8162-01A-21D-2253-08 TCGA-DU-8162-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx 337b4f73-2891-4f94-a24e-a6022bc871da a92ca991-440e-4646-826f-2db2b4734fb2 CAGCTGTCCCCCAAGCTGTGT 0.488 13 69 GIPC3 126326 hgsc.bcm.edu;broad.mit.edu 37 19 3589459 3589459 + Missense_Mutation SNP G G T TCGA-DU-8162-01A-21D-2253-08 TCGA-DU-8162-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx 337b4f73-2891-4f94-a24e-a6022bc871da a92ca991-440e-4646-826f-2db2b4734fb2 GGCCAGAGAAGTCGGTCCAGC 0.597 6 93 SLC1A6 6511 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 19 15073150 15073150 + Missense_Mutation SNP G G A TCGA-DU-8162-01A-21D-2253-08 TCGA-DU-8162-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx 337b4f73-2891-4f94-a24e-a6022bc871da a92ca991-440e-4646-826f-2db2b4734fb2 GCTGTACTGCGTCTTGAACTG 0.532 22 107 CYP4F12 66002 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 19 15791263 15791263 + Silent SNP C C T TCGA-DU-8162-01A-21D-2253-08 TCGA-DU-8162-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx 337b4f73-2891-4f94-a24e-a6022bc871da a92ca991-440e-4646-826f-2db2b4734fb2 TGCTGACGCCCGCCTTCCATT 0.537 7 41 ATP4A 495 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 19 36046172 36046172 + Missense_Mutation SNP A A T TCGA-DU-8162-01A-21D-2253-08 TCGA-DU-8162-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx 337b4f73-2891-4f94-a24e-a6022bc871da a92ca991-440e-4646-826f-2db2b4734fb2 GGCTACTCCGATGTCTGCCTT 0.587 11 83 RRAS 6237 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 19 50140129 50140129 + Missense_Mutation SNP C C T TCGA-DU-8162-01A-21D-2253-08 TCGA-DU-8162-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx 337b4f73-2891-4f94-a24e-a6022bc871da a92ca991-440e-4646-826f-2db2b4734fb2 GTGGCCAGCACGCATGTACTG 0.667 19 176 HMCN1 83872 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 1 186055385 186055385 + Silent SNP A A T TCGA-DU-8162-01A-21D-2253-08 TCGA-DU-8162-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx 337b4f73-2891-4f94-a24e-a6022bc871da a92ca991-440e-4646-826f-2db2b4734fb2 TAGTTCCTCCAAGTGTCATTG 0.368 9 63 C4BPA 722 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 1 207297690 207297690 + Missense_Mutation SNP C C A TCGA-DU-8162-01A-21D-2253-08 TCGA-DU-8162-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx 337b4f73-2891-4f94-a24e-a6022bc871da a92ca991-440e-4646-826f-2db2b4734fb2 TGTTTGGAGACCAAGCCCTCC 0.428 13 53 RTN4R 65078 hgsc.bcm.edu;broad.mit.edu 37 22 20229976 20229976 + Missense_Mutation SNP C C T rs139685891 TCGA-DU-8162-01A-21D-2253-08 TCGA-DU-8162-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx 337b4f73-2891-4f94-a24e-a6022bc871da a92ca991-440e-4646-826f-2db2b4734fb2 TGTCATGAGGCGGCCAAGGTC 0.642 7 83 SNRNP200 23020 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 2 96970469 96970469 + Silent SNP C C T TCGA-DU-8162-01A-21D-2253-08 TCGA-DU-8162-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx 337b4f73-2891-4f94-a24e-a6022bc871da a92ca991-440e-4646-826f-2db2b4734fb2 CCTGCATCTGCGGTTTGGTCC 0.527 8 130 FARP2 9855 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 2 242432832 242432832 + Missense_Mutation SNP G G A TCGA-DU-8162-01A-21D-2253-08 TCGA-DU-8162-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx 337b4f73-2891-4f94-a24e-a6022bc871da a92ca991-440e-4646-826f-2db2b4734fb2 TACTTCTTCCGGGCTGAGAGC 0.527 7 63 C3orf30 0 hgsc.bcm.edu;broad.mit.edu 37 3 118865808 118865808 + Missense_Mutation SNP A A G TCGA-DU-8162-01A-21D-2253-08 TCGA-DU-8162-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx 337b4f73-2891-4f94-a24e-a6022bc871da a92ca991-440e-4646-826f-2db2b4734fb2 TTCCGTACAGATTGACCGCAG 0.502 5 73 TAS2R1 50834 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 5 9629469 9629469 + Missense_Mutation SNP C C T rs145804099 TCGA-DU-8162-01A-21D-2253-08 TCGA-DU-8162-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx 337b4f73-2891-4f94-a24e-a6022bc871da a92ca991-440e-4646-826f-2db2b4734fb2 GACAGCAACGCGCTGATGGGT 0.498 9 57 FOXQ1 94234 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 6 1313285 1313285 + Missense_Mutation SNP C C T TCGA-DU-8162-01A-21D-2253-08 TCGA-DU-8162-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx 337b4f73-2891-4f94-a24e-a6022bc871da a92ca991-440e-4646-826f-2db2b4734fb2 GCCATATACGCGGCGGCCCAA 0.746 10 54 MRS2 57380 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 6 24412567 24412567 + Missense_Mutation SNP G G A TCGA-DU-8162-01A-21D-2253-08 TCGA-DU-8162-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx 337b4f73-2891-4f94-a24e-a6022bc871da a92ca991-440e-4646-826f-2db2b4734fb2 GGGTCAACTCGTTACATACCC 0.388 8 113 SLC22A16 85413 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 6 110778136 110778136 + Silent SNP G G A TCGA-DU-8162-01A-21D-2253-08 TCGA-DU-8162-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx 337b4f73-2891-4f94-a24e-a6022bc871da a92ca991-440e-4646-826f-2db2b4734fb2 GATGAGGGGTGACTCCCATGA 0.473 6 45 EGFR 1956 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 7 55233043 55233043 + Missense_Mutation SNP G G T rs139236063 TCGA-DU-8162-01A-21D-2253-08 TCGA-DU-8162-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx 337b4f73-2891-4f94-a24e-a6022bc871da a92ca991-440e-4646-826f-2db2b4734fb2 TGCCCGGCAGGAGTCATGGGA 0.567 200 162 FBXO24 26261 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 7 100187922 100187922 + Silent SNP G G A TCGA-DU-8162-01A-21D-2253-08 TCGA-DU-8162-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx 337b4f73-2891-4f94-a24e-a6022bc871da a92ca991-440e-4646-826f-2db2b4734fb2 GACTCAGTCCGCGCCTCCAAG 0.602 10 45 FLNC 2318 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 7 128490958 128490958 + Missense_Mutation SNP C C T TCGA-DU-8162-01A-21D-2253-08 TCGA-DU-8162-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx 337b4f73-2891-4f94-a24e-a6022bc871da a92ca991-440e-4646-826f-2db2b4734fb2 GAAAGGCCTGCACCAGATGGG 0.617 21 231 MYOM2 9172 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 8 2027640 2027640 + Splice_Site SNP G G A TCGA-DU-8162-01A-21D-2253-08 TCGA-DU-8162-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx 337b4f73-2891-4f94-a24e-a6022bc871da a92ca991-440e-4646-826f-2db2b4734fb2 TCTCTCCGCAGCCGTTCATTT 0.512 51 397 PHKA2 5256 hgsc.bcm.edu;ucsc.edu 37 X 18956823 18956823 + Silent SNP G G A rs35010660 byFrequency TCGA-DU-8162-01A-21D-2253-08 TCGA-DU-8162-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx 337b4f73-2891-4f94-a24e-a6022bc871da a92ca991-440e-4646-826f-2db2b4734fb2 CAATGTTTTCGAAGAGCTTGA 0.383 17 86 GPRASP1 9737 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 X 101912054 101912054 + Silent SNP G G A TCGA-DU-8162-01A-21D-2253-08 TCGA-DU-8162-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx 337b4f73-2891-4f94-a24e-a6022bc871da a92ca991-440e-4646-826f-2db2b4734fb2 TTAGATTTCCGAAAGAGGCAG 0.512 20 154 SEPT6 23157 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 X 118774683 118774683 + Silent SNP C C T rs143382025 TCGA-DU-8162-01A-21D-2253-08 TCGA-DU-8162-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx 337b4f73-2891-4f94-a24e-a6022bc871da a92ca991-440e-4646-826f-2db2b4734fb2 GATACTGCCGCGCCCTCATCA 0.547 23 181 RFX4 5992 broad.mit.edu;ucsc.edu 37 12 107090062 107090062 + Splice_Site SNP T T G TCGA-DU-8162-01A-21D-2253-08 TCGA-DU-8162-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx 337b4f73-2891-4f94-a24e-a6022bc871da a92ca991-440e-4646-826f-2db2b4734fb2 TCAATACAGGTTCAAAGTTTC 0.552 14 67