Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_file Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID ref_context gc_content t_alt_count t_ref_count OR4D10 390197 hgsc.bcm.edu;broad.mit.edu 37 11 59245678 59245678 + Missense_Mutation SNP C C T TCGA-DU-8164-01A-11D-2253-08 TCGA-DU-8164-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx 67139b71-a2d8-4a49-a684-51a4804e294a 79381346-232e-46b8-a3fa-c93df24692ca TATGTCTATGCCCGGCCCTTC 0.562 18 354 PTPRO 5800 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 12 15654567 15654567 + Silent SNP T T C TCGA-DU-8164-01A-11D-2253-08 TCGA-DU-8164-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx 67139b71-a2d8-4a49-a684-51a4804e294a 79381346-232e-46b8-a3fa-c93df24692ca CTTATCCACCTCAAAATATTT 0.348 19 43 RGS6 9628 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 14 72961928 72961928 + Missense_Mutation SNP C C A TCGA-DU-8164-01A-11D-2253-08 TCGA-DU-8164-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx 67139b71-a2d8-4a49-a684-51a4804e294a 79381346-232e-46b8-a3fa-c93df24692ca CCATCCAACCCTTGGATCAGC 0.443 144 192 ATP8B4 79895 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 15 50189590 50189590 + Missense_Mutation SNP A A C TCGA-DU-8164-01A-11D-2253-08 TCGA-DU-8164-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx 67139b71-a2d8-4a49-a684-51a4804e294a 79381346-232e-46b8-a3fa-c93df24692ca ATTCGGAAATAAGACCACCTT 0.413 116 131 ZNF688 146542 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 16 30581515 30581515 + Missense_Mutation SNP A A T TCGA-DU-8164-01A-11D-2253-08 TCGA-DU-8164-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx 67139b71-a2d8-4a49-a684-51a4804e294a 79381346-232e-46b8-a3fa-c93df24692ca CAGTCCGTGCACACGTGGCGC 0.687 11 14 HOXB8 3218 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 17 46691864 46691864 + Missense_Mutation SNP G G A TCGA-DU-8164-01A-11D-2253-08 TCGA-DU-8164-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx 67139b71-a2d8-4a49-a684-51a4804e294a 79381346-232e-46b8-a3fa-c93df24692ca CTGCTGGTAGGGAGCCGTGGA 0.672 23 29 DCC 1630 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 18 50731664 50731664 + Missense_Mutation SNP C C T TCGA-DU-8164-01A-11D-2253-08 TCGA-DU-8164-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx 67139b71-a2d8-4a49-a684-51a4804e294a 79381346-232e-46b8-a3fa-c93df24692ca TGGGAACCCCCTGCCTATGCA 0.458 70 191 ELANE 1991 hgsc.bcm.edu;ucsc.edu 37 19 852344 852344 + Nonsense_Mutation SNP C C T TCGA-DU-8164-01A-11D-2253-08 TCGA-DU-8164-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx 67139b71-a2d8-4a49-a684-51a4804e294a 79381346-232e-46b8-a3fa-c93df24692ca CCTCGGCCGCCGACTCGCGTG 0.677 34 40 FEM1A 55527 hgsc.bcm.edu;broad.mit.edu 37 19 4792851 4792851 + Missense_Mutation SNP C C T TCGA-DU-8164-01A-11D-2253-08 TCGA-DU-8164-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx 67139b71-a2d8-4a49-a684-51a4804e294a 79381346-232e-46b8-a3fa-c93df24692ca CATGGAGCTGCGTCACCAGGG 0.607 22 35 KXD1 79036 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 19 18679431 18679431 + Missense_Mutation SNP C C T TCGA-DU-8164-01A-11D-2253-08 TCGA-DU-8164-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx 67139b71-a2d8-4a49-a684-51a4804e294a 79381346-232e-46b8-a3fa-c93df24692ca GAGGAGATGACGGGCGAATAG 0.652 16 36 C1orf173 0 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 1 75038852 75038852 + Missense_Mutation SNP C C A TCGA-DU-8164-01A-11D-2253-08 TCGA-DU-8164-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx 67139b71-a2d8-4a49-a684-51a4804e294a 79381346-232e-46b8-a3fa-c93df24692ca AGCCTTCTGACCCCTTCTGCT 0.532 27 28 NUP210L 91181 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 1 154062058 154062058 + Nonsense_Mutation SNP G G A TCGA-DU-8164-01A-11D-2253-08 TCGA-DU-8164-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx 67139b71-a2d8-4a49-a684-51a4804e294a 79381346-232e-46b8-a3fa-c93df24692ca TTTCCAATTCGGAATGTGAGA 0.423 32 68 ELFN2 114794 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 22 37770047 37770047 + Missense_Mutation SNP C C T rs143903281 TCGA-DU-8164-01A-11D-2253-08 TCGA-DU-8164-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx 67139b71-a2d8-4a49-a684-51a4804e294a 79381346-232e-46b8-a3fa-c93df24692ca CCGTCCCCGCCGGCGCCTGTG 0.662 35 56 TTN 7273 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 2 179435704 179435704 + Missense_Mutation SNP C C T TCGA-DU-8164-01A-11D-2253-08 TCGA-DU-8164-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx 67139b71-a2d8-4a49-a684-51a4804e294a 79381346-232e-46b8-a3fa-c93df24692ca TTTCATCCAACGGCCCTCAGG 0.408 102 157 IDH1 3417 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 2 209113112 209113112 + Missense_Mutation SNP C C T rs121913500 TCGA-DU-8164-01A-11D-2253-08 TCGA-DU-8164-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx 67139b71-a2d8-4a49-a684-51a4804e294a 79381346-232e-46b8-a3fa-c93df24692ca ATAAGCATGACGACCTATGAT 0.393 39 74 SETD2 29072 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 3 47155394 47155394 + Missense_Mutation SNP C C G TCGA-DU-8164-01A-11D-2253-08 TCGA-DU-8164-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx 67139b71-a2d8-4a49-a684-51a4804e294a 79381346-232e-46b8-a3fa-c93df24692ca GCTCTCAAGCCCCAGCCTTTC 0.428 25 54 PIK3CA 5290 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 3 178928079 178928079 + Missense_Mutation SNP G G A TCGA-DU-8164-01A-11D-2253-08 TCGA-DU-8164-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx 67139b71-a2d8-4a49-a684-51a4804e294a 79381346-232e-46b8-a3fa-c93df24692ca TCATGGATTAGAAGATTTGCT 0.348 44 68 IGJ 3512 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 4 71527853 71527853 + Silent SNP G G A TCGA-DU-8164-01A-11D-2253-08 TCGA-DU-8164-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx 67139b71-a2d8-4a49-a684-51a4804e294a 79381346-232e-46b8-a3fa-c93df24692ca TAGGATCTTCGGAAGAACGGA 0.393 49 93 SOWAHB 345079 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 4 77818021 77818021 + Missense_Mutation SNP A A C TCGA-DU-8164-01A-11D-2253-08 TCGA-DU-8164-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx 67139b71-a2d8-4a49-a684-51a4804e294a 79381346-232e-46b8-a3fa-c93df24692ca AGCACCGACCAGGCGCGGATA 0.652 17 32 PDGFC 56034 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 4 157689077 157689077 + Missense_Mutation SNP C C T TCGA-DU-8164-01A-11D-2253-08 TCGA-DU-8164-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx 67139b71-a2d8-4a49-a684-51a4804e294a 79381346-232e-46b8-a3fa-c93df24692ca CTTATGGACACTGAGAAGTTA 0.428 17 203 ARSK 153642 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 5 94918892 94918892 + Missense_Mutation SNP G G T TCGA-DU-8164-01A-11D-2253-08 TCGA-DU-8164-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx 67139b71-a2d8-4a49-a684-51a4804e294a 79381346-232e-46b8-a3fa-c93df24692ca TCTCTTTATTGGCTTGAAAAA 0.313 14 38 TENM2 57451 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 5 167674704 167674704 + Missense_Mutation SNP A A G TCGA-DU-8164-01A-11D-2253-08 TCGA-DU-8164-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx 67139b71-a2d8-4a49-a684-51a4804e294a 79381346-232e-46b8-a3fa-c93df24692ca CCGGGATCGGATAACCAGACT 0.527 30 61 HIST1H4B 8366 hgsc.bcm.edu;broad.mit.edu 37 6 26027273 26027273 + Missense_Mutation SNP C C T TCGA-DU-8164-01A-11D-2253-08 TCGA-DU-8164-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx 67139b71-a2d8-4a49-a684-51a4804e294a 79381346-232e-46b8-a3fa-c93df24692ca TAGGTCACGGCGTCCCGGATC 0.577 4 64 SCUBE3 222663 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 6 35208200 35208200 + Missense_Mutation SNP C C G TCGA-DU-8164-01A-11D-2253-08 TCGA-DU-8164-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx 67139b71-a2d8-4a49-a684-51a4804e294a 79381346-232e-46b8-a3fa-c93df24692ca TATGTGTCAACACACCAGGAA 0.507 8 85 LRFN2 57497 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 6 40400680 40400680 + Missense_Mutation SNP C C T TCGA-DU-8164-01A-11D-2253-08 TCGA-DU-8164-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx 67139b71-a2d8-4a49-a684-51a4804e294a 79381346-232e-46b8-a3fa-c93df24692ca GCCGCCCAGGCGCAGCTCCAC 0.602 42 50 MEP1A 4224 hgsc.bcm.edu;broad.mit.edu 37 6 46801256 46801256 + Silent SNP G G A TCGA-DU-8164-01A-11D-2253-08 TCGA-DU-8164-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx 67139b71-a2d8-4a49-a684-51a4804e294a 79381346-232e-46b8-a3fa-c93df24692ca TCACTACCTCGAAGTCGCACA 0.517 17 174 FANCC 2176 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 9 98009714 98009714 + Splice_Site SNP C C T TCGA-DU-8164-01A-11D-2253-08 TCGA-DU-8164-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx 67139b71-a2d8-4a49-a684-51a4804e294a 79381346-232e-46b8-a3fa-c93df24692ca TGATTCTTACCATATGCTAAA 0.323 24 81 NIPSNAP3B 55335 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 9 107531159 107531159 + Missense_Mutation SNP G G A rs141198887 byFrequency TCGA-DU-8164-01A-11D-2253-08 TCGA-DU-8164-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx 67139b71-a2d8-4a49-a684-51a4804e294a 79381346-232e-46b8-a3fa-c93df24692ca TTTGCTCATCGAGCTGAAGTT 0.343 8 37 CYP4Z2P 0 broad.mit.edu;ucsc.edu 37 1 47333730 47333730 + RNA SNP G G A TCGA-DU-8164-01A-11D-2253-08 TCGA-DU-8164-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx 67139b71-a2d8-4a49-a684-51a4804e294a 79381346-232e-46b8-a3fa-c93df24692ca AGCAGTAGTTGTGGTGTCATG 0.438 18 15 PTCD1 26024 broad.mit.edu;ucsc.edu 37 7 99022522 99022522 + Missense_Mutation SNP C C A TCGA-DU-8164-01A-11D-2253-08 TCGA-DU-8164-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx 67139b71-a2d8-4a49-a684-51a4804e294a 79381346-232e-46b8-a3fa-c93df24692ca TTTGCCAGGACCGGCAACAGC 0.597 27 34 FUBP1 8880 broad.mit.edu;hgsc.bcm.edu 37 1 78430888 78430888 + Frame_Shift_Del DEL A A - TCGA-DU-8164-01A-11D-2253-08 TCGA-DU-8164-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx 67139b71-a2d8-4a49-a684-51a4804e294a 79381346-232e-46b8-a3fa-c93df24692ca CTTTTTCAACAATCTGGTCCA 0.393 53 7