Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_file Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID ref_context gc_content t_alt_count t_ref_count PTER 9317 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 10 16547111 16547111 + Missense_Mutation SNP A A G TCGA-DU-A5TS-01A-11D-A289-08 TCGA-DU-A5TS-10A-01D-A289-08 Untested Somatic Phase_I WXS none Illumina GAIIx e3696edf-3956-4285-bfdc-6f273fe969da e1fa7dc9-6e6e-4502-a676-cd96ea6ebe59 CTTCATTACCAACTCGGCCCA 0.393 50 68 ANKRD30A 91074 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 10 37508226 37508226 + Nonsense_Mutation SNP G G T TCGA-DU-A5TS-01A-11D-A289-08 TCGA-DU-A5TS-10A-01D-A289-08 Untested Somatic Phase_I WXS none Illumina GAIIx e3696edf-3956-4285-bfdc-6f273fe969da e1fa7dc9-6e6e-4502-a676-cd96ea6ebe59 GGCAGAAATTGAATCACACCA 0.393 26 66 ANK3 288 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 10 61848084 61848084 + Missense_Mutation SNP G G A TCGA-DU-A5TS-01A-11D-A289-08 TCGA-DU-A5TS-10A-01D-A289-08 Untested Somatic Phase_I WXS none Illumina GAIIx e3696edf-3956-4285-bfdc-6f273fe969da e1fa7dc9-6e6e-4502-a676-cd96ea6ebe59 CTGCAGATACGCTTTTTCCCT 0.398 8 67 MYO7A 4647 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 11 76912498 76912498 + Missense_Mutation SNP G G A TCGA-DU-A5TS-01A-11D-A289-08 TCGA-DU-A5TS-10A-01D-A289-08 Untested Somatic Phase_I WXS none Illumina GAIIx e3696edf-3956-4285-bfdc-6f273fe969da e1fa7dc9-6e6e-4502-a676-cd96ea6ebe59 TACAGCAGGCGAGGAGTCAGG 0.567 8 18 NCAPD2 9918 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 12 6636155 6636155 + Missense_Mutation SNP G G C TCGA-DU-A5TS-01A-11D-A289-08 TCGA-DU-A5TS-10A-01D-A289-08 Untested Somatic Phase_I WXS none Illumina GAIIx e3696edf-3956-4285-bfdc-6f273fe969da e1fa7dc9-6e6e-4502-a676-cd96ea6ebe59 GGAGCAGGCAGTGAGTGGAGA 0.592 147 122 NAV3 89795 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 12 78415595 78415595 + Missense_Mutation SNP A A G TCGA-DU-A5TS-01A-11D-A289-08 TCGA-DU-A5TS-10A-01D-A289-08 Untested Somatic Phase_I WXS none Illumina GAIIx e3696edf-3956-4285-bfdc-6f273fe969da e1fa7dc9-6e6e-4502-a676-cd96ea6ebe59 ACAAAGATGGACTTATCATAT 0.418 44 56 RASSF9 9182 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 12 86199245 86199245 + Silent SNP A A G TCGA-DU-A5TS-01A-11D-A289-08 TCGA-DU-A5TS-10A-01D-A289-08 Untested Somatic Phase_I WXS none Illumina GAIIx e3696edf-3956-4285-bfdc-6f273fe969da e1fa7dc9-6e6e-4502-a676-cd96ea6ebe59 TCTCCATATTATCTCGATCAT 0.373 18 112 SETD8 387893 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 12 123889487 123889487 + Silent SNP G G A TCGA-DU-A5TS-01A-11D-A289-08 TCGA-DU-A5TS-10A-01D-A289-08 Untested Somatic Phase_I WXS none Illumina GAIIx e3696edf-3956-4285-bfdc-6f273fe969da e1fa7dc9-6e6e-4502-a676-cd96ea6ebe59 AGTTCTCCCGGGGTGACTTTG 0.547 43 66 ULK1 8408 hgsc.bcm.edu;ucsc.edu 37 12 132392064 132392064 + Missense_Mutation SNP G G A TCGA-DU-A5TS-01A-11D-A289-08 TCGA-DU-A5TS-10A-01D-A289-08 Untested Somatic Phase_I WXS none Illumina GAIIx e3696edf-3956-4285-bfdc-6f273fe969da e1fa7dc9-6e6e-4502-a676-cd96ea6ebe59 GGACCTGGCCGACTACCTGCA 0.711 5 37 RXFP2 122042 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 13 32360543 32360543 + Missense_Mutation SNP C C T TCGA-DU-A5TS-01A-11D-A289-08 TCGA-DU-A5TS-10A-01D-A289-08 Untested Somatic Phase_I WXS none Illumina GAIIx e3696edf-3956-4285-bfdc-6f273fe969da e1fa7dc9-6e6e-4502-a676-cd96ea6ebe59 AATACGATAACGGAACTATCA 0.358 23 39 PNP 4860 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 14 20940627 20940627 + Nonsense_Mutation SNP C C T rs104894460 TCGA-DU-A5TS-01A-11D-A289-08 TCGA-DU-A5TS-10A-01D-A289-08 Untested Somatic Phase_I WXS none Illumina GAIIx e3696edf-3956-4285-bfdc-6f273fe969da e1fa7dc9-6e6e-4502-a676-cd96ea6ebe59 CAACTTTCCCCGAAGTACAGG 0.468 16 18 CNGB1 1258 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 16 58001075 58001075 + Missense_Mutation SNP G G T TCGA-DU-A5TS-01A-11D-A289-08 TCGA-DU-A5TS-10A-01D-A289-08 Untested Somatic Phase_I WXS none Illumina GAIIx e3696edf-3956-4285-bfdc-6f273fe969da e1fa7dc9-6e6e-4502-a676-cd96ea6ebe59 ATTCGGTTCTGGTTCCACCTC 0.642 46 80 ANKRD11 29123 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 16 89357057 89357057 + Missense_Mutation SNP C C T TCGA-DU-A5TS-01A-11D-A289-08 TCGA-DU-A5TS-10A-01D-A289-08 Untested Somatic Phase_I WXS none Illumina GAIIx e3696edf-3956-4285-bfdc-6f273fe969da e1fa7dc9-6e6e-4502-a676-cd96ea6ebe59 ACGTTGACGTCTGCCCCCTCG 0.652 19 130 ANKRD11 29123 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 16 89357151 89357151 + Silent SNP C C T TCGA-DU-A5TS-01A-11D-A289-08 TCGA-DU-A5TS-10A-01D-A289-08 Untested Somatic Phase_I WXS none Illumina GAIIx e3696edf-3956-4285-bfdc-6f273fe969da e1fa7dc9-6e6e-4502-a676-cd96ea6ebe59 TTCTCTTGTTCACTTTATCTT 0.592 20 116 ACLY 47 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 17 40065858 40065858 + Silent SNP G G A TCGA-DU-A5TS-01A-11D-A289-08 TCGA-DU-A5TS-10A-01D-A289-08 Untested Somatic Phase_I WXS none Illumina GAIIx e3696edf-3956-4285-bfdc-6f273fe969da e1fa7dc9-6e6e-4502-a676-cd96ea6ebe59 TCTGGGCCTTGGCGTCCACAT 0.547 10 70 DSC1 1823 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 18 28739449 28739449 + Missense_Mutation SNP C C G TCGA-DU-A5TS-01A-11D-A289-08 TCGA-DU-A5TS-10A-01D-A289-08 Untested Somatic Phase_I WXS none Illumina GAIIx e3696edf-3956-4285-bfdc-6f273fe969da e1fa7dc9-6e6e-4502-a676-cd96ea6ebe59 AGAAGGAACTCGAAGATAAAC 0.338 20 27 NLRP13 126204 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 19 56421928 56421928 + Splice_Site SNP C C T TCGA-DU-A5TS-01A-11D-A289-08 TCGA-DU-A5TS-10A-01D-A289-08 Untested Somatic Phase_I WXS none Illumina GAIIx e3696edf-3956-4285-bfdc-6f273fe969da e1fa7dc9-6e6e-4502-a676-cd96ea6ebe59 CTCACACTTACGTCAGTTTCT 0.458 17 49 KLHL17 339451 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 1 897822 897822 + Missense_Mutation SNP G G A TCGA-DU-A5TS-01A-11D-A289-08 TCGA-DU-A5TS-10A-01D-A289-08 Untested Somatic Phase_I WXS none Illumina GAIIx e3696edf-3956-4285-bfdc-6f273fe969da e1fa7dc9-6e6e-4502-a676-cd96ea6ebe59 GAAACACGACGTGGACGCCCG 0.677 15 83 AP4B1 10717 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 1 114443970 114443970 + Missense_Mutation SNP G G A TCGA-DU-A5TS-01A-11D-A289-08 TCGA-DU-A5TS-10A-01D-A289-08 Untested Somatic Phase_I WXS none Illumina GAIIx e3696edf-3956-4285-bfdc-6f273fe969da e1fa7dc9-6e6e-4502-a676-cd96ea6ebe59 TCCTGGTCACGCAGCAAACTG 0.413 15 65 HMCN1 83872 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 1 185969241 185969241 + Silent SNP C C T TCGA-DU-A5TS-01A-11D-A289-08 TCGA-DU-A5TS-10A-01D-A289-08 Untested Somatic Phase_I WXS none Illumina GAIIx e3696edf-3956-4285-bfdc-6f273fe969da e1fa7dc9-6e6e-4502-a676-cd96ea6ebe59 GAGAGCCTGGCATTTCTATCT 0.413 16 41 PCNXL2 80003 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 1 233394931 233394931 + Missense_Mutation SNP C C T TCGA-DU-A5TS-01A-11D-A289-08 TCGA-DU-A5TS-10A-01D-A289-08 Untested Somatic Phase_I WXS none Illumina GAIIx e3696edf-3956-4285-bfdc-6f273fe969da e1fa7dc9-6e6e-4502-a676-cd96ea6ebe59 CTTTCCTTTACCATTGATGAG 0.507 53 85 LRRC3 81543 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 21 45876675 45876675 + Missense_Mutation SNP T T C TCGA-DU-A5TS-01A-11D-A289-08 TCGA-DU-A5TS-10A-01D-A289-08 Untested Somatic Phase_I WXS none Illumina GAIIx e3696edf-3956-4285-bfdc-6f273fe969da e1fa7dc9-6e6e-4502-a676-cd96ea6ebe59 GGCTGTCTTCTGCAGCTTGCG 0.677 27 40 DNMT3A 1788 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 2 25467457 25467457 + Missense_Mutation SNP C C T TCGA-DU-A5TS-01A-11D-A289-08 TCGA-DU-A5TS-10A-01D-A289-08 Untested Somatic Phase_I WXS none Illumina GAIIx e3696edf-3956-4285-bfdc-6f273fe969da e1fa7dc9-6e6e-4502-a676-cd96ea6ebe59 GCCCCCACAGCAGATGGTGCA 0.602 26 36 PKP4 8502 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 2 159537147 159537147 + Silent SNP T T C TCGA-DU-A5TS-01A-11D-A289-08 TCGA-DU-A5TS-10A-01D-A289-08 Untested Somatic Phase_I WXS none Illumina GAIIx e3696edf-3956-4285-bfdc-6f273fe969da e1fa7dc9-6e6e-4502-a676-cd96ea6ebe59 GACCTTCTTATAGAGCAGAAC 0.428 51 89 IDH1 3417 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 2 209113112 209113112 + Missense_Mutation SNP C C T rs121913500 TCGA-DU-A5TS-01A-11D-A289-08 TCGA-DU-A5TS-10A-01D-A289-08 Untested Somatic Phase_I WXS none Illumina GAIIx e3696edf-3956-4285-bfdc-6f273fe969da e1fa7dc9-6e6e-4502-a676-cd96ea6ebe59 ATAAGCATGACGACCTATGAT 0.393 21 48 RHBDD1 84236 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 2 227729609 227729609 + Missense_Mutation SNP G G A TCGA-DU-A5TS-01A-11D-A289-08 TCGA-DU-A5TS-10A-01D-A289-08 Untested Somatic Phase_I WXS none Illumina GAIIx e3696edf-3956-4285-bfdc-6f273fe969da e1fa7dc9-6e6e-4502-a676-cd96ea6ebe59 GACTGGCAGCGTTTACTGCTC 0.453 30 74 USP40 55230 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 2 234408535 234408535 + Silent SNP A A G TCGA-DU-A5TS-01A-11D-A289-08 TCGA-DU-A5TS-10A-01D-A289-08 Untested Somatic Phase_I WXS none Illumina GAIIx e3696edf-3956-4285-bfdc-6f273fe969da e1fa7dc9-6e6e-4502-a676-cd96ea6ebe59 CTTGTAGGCCAGATTTCTTCA 0.308 17 19 NBEAL2 23218 hgsc.bcm.edu;ucsc.edu 37 3 47047865 47047865 + Missense_Mutation SNP C C T TCGA-DU-A5TS-01A-11D-A289-08 TCGA-DU-A5TS-10A-01D-A289-08 Untested Somatic Phase_I WXS none Illumina GAIIx e3696edf-3956-4285-bfdc-6f273fe969da e1fa7dc9-6e6e-4502-a676-cd96ea6ebe59 AGCAGCCCATCGCCTTGCACG 0.557 4 15 STAB1 23166 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 3 52539710 52539710 + Silent SNP C C T TCGA-DU-A5TS-01A-11D-A289-08 TCGA-DU-A5TS-10A-01D-A289-08 Untested Somatic Phase_I WXS none Illumina GAIIx e3696edf-3956-4285-bfdc-6f273fe969da e1fa7dc9-6e6e-4502-a676-cd96ea6ebe59 CCATCCTGGACGGACCTGGGC 0.637 19 49 CD2AP 23607 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 6 47575765 47575765 + Splice_Site SNP G G A TCGA-DU-A5TS-01A-11D-A289-08 TCGA-DU-A5TS-10A-01D-A289-08 Untested Somatic Phase_I WXS none Illumina GAIIx e3696edf-3956-4285-bfdc-6f273fe969da e1fa7dc9-6e6e-4502-a676-cd96ea6ebe59 CTCTCCAAAGGTGAGGTGCAT 0.383 21 34 FAM220A 84792 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 7 6370325 6370325 + Missense_Mutation SNP C C G TCGA-DU-A5TS-01A-11D-A289-08 TCGA-DU-A5TS-10A-01D-A289-08 Untested Somatic Phase_I WXS none Illumina GAIIx e3696edf-3956-4285-bfdc-6f273fe969da e1fa7dc9-6e6e-4502-a676-cd96ea6ebe59 GCGTGGCAGTCGTGACACCCG 0.612 27 42 KCNV2 169522 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 9 2718275 2718275 + Missense_Mutation SNP G G A TCGA-DU-A5TS-01A-11D-A289-08 TCGA-DU-A5TS-10A-01D-A289-08 Untested Somatic Phase_I WXS none Illumina GAIIx e3696edf-3956-4285-bfdc-6f273fe969da e1fa7dc9-6e6e-4502-a676-cd96ea6ebe59 CTGTGTCCGCGCCGCTTCCTG 0.647 20 24 RABL6 55684 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 9 139726181 139726181 + Missense_Mutation SNP A A G TCGA-DU-A5TS-01A-11D-A289-08 TCGA-DU-A5TS-10A-01D-A289-08 Untested Somatic Phase_I WXS none Illumina GAIIx e3696edf-3956-4285-bfdc-6f273fe969da e1fa7dc9-6e6e-4502-a676-cd96ea6ebe59 AGGACCTTCAATTACATTCTC 0.622 20 79 CACNA1B 774 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 9 140946556 140946556 + Silent SNP G G A TCGA-DU-A5TS-01A-11D-A289-08 TCGA-DU-A5TS-10A-01D-A289-08 Untested Somatic Phase_I WXS none Illumina GAIIx e3696edf-3956-4285-bfdc-6f273fe969da e1fa7dc9-6e6e-4502-a676-cd96ea6ebe59 GATCCAAAGGGAAAGACATCA 0.577 10 20 SUFU 51684 broad.mit.edu;ucsc.edu 37 10 104353823 104353823 + Splice_Site SNP G G T TCGA-DU-A5TS-01A-11D-A289-08 TCGA-DU-A5TS-10A-01D-A289-08 Untested Somatic Phase_I WXS none Illumina GAIIx e3696edf-3956-4285-bfdc-6f273fe969da e1fa7dc9-6e6e-4502-a676-cd96ea6ebe59 ACACCTGCAAGTATGTCTTGA 0.502 36 73 SEMA4A 64218 broad.mit.edu;ucsc.edu 37 1 156144932 156144932 + Missense_Mutation SNP G G T TCGA-DU-A5TS-01A-11D-A289-08 TCGA-DU-A5TS-10A-01D-A289-08 Untested Somatic Phase_I WXS none Illumina GAIIx e3696edf-3956-4285-bfdc-6f273fe969da e1fa7dc9-6e6e-4502-a676-cd96ea6ebe59 CGAGCCAACTGTAGTGTCTAT 0.602 38 341 SCN1B 6324 broad.mit.edu;ucsc.edu 37 19 35524708 35524708 + Nonsense_Mutation SNP G G A TCGA-DU-A5TS-01A-11D-A289-08 TCGA-DU-A5TS-10A-01D-A289-08 Untested Somatic Phase_I WXS none Illumina GAIIx e3696edf-3956-4285-bfdc-6f273fe969da e1fa7dc9-6e6e-4502-a676-cd96ea6ebe59 GGGACAGATGGCAGGCAGTGG 0.647 30 50 NCSTN 23385 broad.mit.edu;hgsc.bcm.edu 37 1 160321849 160321851 + In_Frame_Del DEL TAG TAG - TCGA-DU-A5TS-01A-11D-A289-08 TCGA-DU-A5TS-10A-01D-A289-08 Untested Somatic Phase_I WXS none Illumina GAIIx e3696edf-3956-4285-bfdc-6f273fe969da e1fa7dc9-6e6e-4502-a676-cd96ea6ebe59 CCTAGCTGGATAGTCGTTCCTTT 0.488 23 72 RFWD2 64326 broad.mit.edu;hgsc.bcm.edu 37 1 175957522 175957523 + Frame_Shift_Del DEL CA CA - TCGA-DU-A5TS-01A-11D-A289-08 TCGA-DU-A5TS-10A-01D-A289-08 Untested Somatic Phase_I WXS none Illumina GAIIx e3696edf-3956-4285-bfdc-6f273fe969da e1fa7dc9-6e6e-4502-a676-cd96ea6ebe59 CCCTACATTCCACAGTTTTAGC 0.391 19 22 SPPL2C 162540 broad.mit.edu;hgsc.bcm.edu 37 17 43922307 43922309 + In_Frame_Del DEL TCC TCC - TCGA-DU-A5TS-01A-11D-A289-08 TCGA-DU-A5TS-10A-01D-A289-08 Untested Somatic Phase_I WXS none Illumina GAIIx e3696edf-3956-4285-bfdc-6f273fe969da e1fa7dc9-6e6e-4502-a676-cd96ea6ebe59 CCCGTGGGCTTCCTCCTCCTCAT 0.626 23 66 ATRX 546 broad.mit.edu;hgsc.bcm.edu 37 X 76938084 76938085 + Frame_Shift_Ins INS - - A TCGA-DU-A5TS-01A-11D-A289-08 TCGA-DU-A5TS-10A-01D-A289-08 Untested Somatic Phase_I WXS none Illumina GAIIx e3696edf-3956-4285-bfdc-6f273fe969da e1fa7dc9-6e6e-4502-a676-cd96ea6ebe59 CTGCTGAAGAGAAAGTCTCTCT 0.421 98 48