Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_file Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID ref_context gc_content t_alt_count t_ref_count MUC2 4583 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 11 1075719 1075719 + Missense_Mutation SNP G G A TCGA-FG-5962-01B-11D-1893-08 TCGA-FG-5962-10A-01D-1893-08 Untested Somatic Phase_I WXS none Illumina GAIIx 28e93aff-9ec4-4fcf-a469-74d8b6190991 57a1f9a5-e7cd-478d-b678-8e1992d9b223 CAAGACCTTCGACGGGGACGT 0.622 8 41 OR5AS1 219447 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 11 55798086 55798086 + Missense_Mutation SNP C C G TCGA-FG-5962-01B-11D-1893-08 TCGA-FG-5962-10A-01D-1893-08 Untested Somatic Phase_I WXS none Illumina GAIIx 28e93aff-9ec4-4fcf-a469-74d8b6190991 57a1f9a5-e7cd-478d-b678-8e1992d9b223 ATTTTCTTAGCAACTTATCTT 0.348 7 58 PDGFD 80310 hgsc.bcm.edu;broad.mit.edu 37 11 103870852 103870852 + Nonsense_Mutation SNP G G A TCGA-FG-5962-01B-11D-1893-08 TCGA-FG-5962-10A-01D-1893-08 Untested Somatic Phase_I WXS none Illumina GAIIx 28e93aff-9ec4-4fcf-a469-74d8b6190991 57a1f9a5-e7cd-478d-b678-8e1992d9b223 GTATTCTCCTGAGAGTGAAGC 0.458 14 222 RDX 5962 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 11 110134885 110134885 + Silent SNP A A C TCGA-FG-5962-01B-11D-1893-08 TCGA-FG-5962-10A-01D-1893-08 Untested Somatic Phase_I WXS none Illumina GAIIx 28e93aff-9ec4-4fcf-a469-74d8b6190991 57a1f9a5-e7cd-478d-b678-8e1992d9b223 ATTCCTCAGAAACATCTTCAG 0.343 8 60 SIK2 23235 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 11 111487048 111487048 + Missense_Mutation SNP A A C TCGA-FG-5962-01B-11D-1893-08 TCGA-FG-5962-10A-01D-1893-08 Untested Somatic Phase_I WXS none Illumina GAIIx 28e93aff-9ec4-4fcf-a469-74d8b6190991 57a1f9a5-e7cd-478d-b678-8e1992d9b223 AATAATGAAAATGTTAGACCA 0.373 12 79 TMEM120B 144404 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 12 122190038 122190038 + Missense_Mutation SNP G G A TCGA-FG-5962-01B-11D-1893-08 TCGA-FG-5962-10A-01D-1893-08 Untested Somatic Phase_I WXS none Illumina GAIIx 28e93aff-9ec4-4fcf-a469-74d8b6190991 57a1f9a5-e7cd-478d-b678-8e1992d9b223 TGGCAGGTTCGCCTACAAGGA 0.567 12 110 ZMYM2 7750 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 13 20638648 20638648 + Missense_Mutation SNP A A G TCGA-FG-5962-01B-11D-1893-08 TCGA-FG-5962-10A-01D-1893-08 Untested Somatic Phase_I WXS none Illumina GAIIx 28e93aff-9ec4-4fcf-a469-74d8b6190991 57a1f9a5-e7cd-478d-b678-8e1992d9b223 TTTGGCGAAGAATATGAGGAA 0.343 4 11 CEP170B 283638 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 14 105353382 105353382 + Missense_Mutation SNP G G A TCGA-FG-5962-01B-11D-1893-08 TCGA-FG-5962-10A-01D-1893-08 Untested Somatic Phase_I WXS none Illumina GAIIx 28e93aff-9ec4-4fcf-a469-74d8b6190991 57a1f9a5-e7cd-478d-b678-8e1992d9b223 TGTGGATGCCGAGTGTGAGGG 0.662 31 46 HERC2 8924 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 15 28460828 28460828 + Missense_Mutation SNP G G A rs140060040 byFrequency TCGA-FG-5962-01B-11D-1893-08 TCGA-FG-5962-10A-01D-1893-08 Untested Somatic Phase_I WXS none Illumina GAIIx 28e93aff-9ec4-4fcf-a469-74d8b6190991 57a1f9a5-e7cd-478d-b678-8e1992d9b223 CATGAGCAGCGTGATCCACTG 0.632 13 16 HERC1 8925 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 15 63901366 63901366 + Missense_Mutation SNP T T C TCGA-FG-5962-01B-11D-1893-08 TCGA-FG-5962-10A-01D-1893-08 Untested Somatic Phase_I WXS none Illumina GAIIx 28e93aff-9ec4-4fcf-a469-74d8b6190991 57a1f9a5-e7cd-478d-b678-8e1992d9b223 CAGTTGTTGATGGCATAGCGC 0.602 10 32 ANKS4B 257629 hgsc.bcm.edu;broad.mit.edu 37 16 21261086 21261086 + Missense_Mutation SNP A A G TCGA-FG-5962-01B-11D-1893-08 TCGA-FG-5962-10A-01D-1893-08 Untested Somatic Phase_I WXS none Illumina GAIIx 28e93aff-9ec4-4fcf-a469-74d8b6190991 57a1f9a5-e7cd-478d-b678-8e1992d9b223 CTGGGGAAACACTCCTCTACA 0.463 8 93 BCKDK 10295 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 16 31121057 31121057 + Missense_Mutation SNP C C T TCGA-FG-5962-01B-11D-1893-08 TCGA-FG-5962-10A-01D-1893-08 Untested Somatic Phase_I WXS none Illumina GAIIx 28e93aff-9ec4-4fcf-a469-74d8b6190991 57a1f9a5-e7cd-478d-b678-8e1992d9b223 CAAGGGCTTCCGCTGCCTTCC 0.587 12 108 GID4 79018 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 17 17948505 17948505 + Missense_Mutation SNP T T G TCGA-FG-5962-01B-11D-1893-08 TCGA-FG-5962-10A-01D-1893-08 Untested Somatic Phase_I WXS none Illumina GAIIx 28e93aff-9ec4-4fcf-a469-74d8b6190991 57a1f9a5-e7cd-478d-b678-8e1992d9b223 ACTTGAAGATTAAAGGCCTTA 0.483 18 110 CLEC4M 10332 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 19 7833752 7833752 + Missense_Mutation SNP C C T TCGA-FG-5962-01B-11D-1893-08 TCGA-FG-5962-10A-01D-1893-08 Untested Somatic Phase_I WXS none Illumina GAIIx 28e93aff-9ec4-4fcf-a469-74d8b6190991 57a1f9a5-e7cd-478d-b678-8e1992d9b223 CAGTGGAGAACCCAACAATAG 0.512 29 213 CIC 23152 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 19 42799059 42799059 + Missense_Mutation SNP C C T TCGA-FG-5962-01B-11D-1893-08 TCGA-FG-5962-10A-01D-1893-08 Untested Somatic Phase_I WXS none Illumina GAIIx 28e93aff-9ec4-4fcf-a469-74d8b6190991 57a1f9a5-e7cd-478d-b678-8e1992d9b223 CCGTGAGGTGCGCCAGAAGAT 0.632 9 71 XRN2 22803 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 20 21336757 21336757 + Missense_Mutation SNP G G A TCGA-FG-5962-01B-11D-1893-08 TCGA-FG-5962-10A-01D-1893-08 Untested Somatic Phase_I WXS none Illumina GAIIx 28e93aff-9ec4-4fcf-a469-74d8b6190991 57a1f9a5-e7cd-478d-b678-8e1992d9b223 TTATTTGTGGGGAAACATCAC 0.383 18 158 TTC27 55622 hgsc.bcm.edu;ucsc.edu 37 2 32891715 32891715 + Missense_Mutation SNP A A T TCGA-FG-5962-01B-11D-1893-08 TCGA-FG-5962-10A-01D-1893-08 Untested Somatic Phase_I WXS none Illumina GAIIx 28e93aff-9ec4-4fcf-a469-74d8b6190991 57a1f9a5-e7cd-478d-b678-8e1992d9b223 CTTTGGGAAAAAGAACACGGT 0.383 8 67 CCDC88A 55704 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 2 55544946 55544946 + Missense_Mutation SNP G G T TCGA-FG-5962-01B-11D-1893-08 TCGA-FG-5962-10A-01D-1893-08 Untested Somatic Phase_I WXS none Illumina GAIIx 28e93aff-9ec4-4fcf-a469-74d8b6190991 57a1f9a5-e7cd-478d-b678-8e1992d9b223 CATGAGTGAGGTACTTTGGGA 0.333 15 102 IDH1 3417 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 2 209113112 209113112 + Missense_Mutation SNP C C T rs121913500 TCGA-FG-5962-01B-11D-1893-08 TCGA-FG-5962-10A-01D-1893-08 Untested Somatic Phase_I WXS none Illumina GAIIx 28e93aff-9ec4-4fcf-a469-74d8b6190991 57a1f9a5-e7cd-478d-b678-8e1992d9b223 ATAAGCATGACGACCTATGAT 0.393 32 80 GTF2E1 2960 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 3 120489647 120489647 + Missense_Mutation SNP G G A TCGA-FG-5962-01B-11D-1893-08 TCGA-FG-5962-10A-01D-1893-08 Untested Somatic Phase_I WXS none Illumina GAIIx 28e93aff-9ec4-4fcf-a469-74d8b6190991 57a1f9a5-e7cd-478d-b678-8e1992d9b223 AAAGATGCACGCACACTTTTG 0.423 54 370 PIK3CA 5290 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 3 178951958 178951958 + Missense_Mutation SNP A A G TCGA-FG-5962-01B-11D-1893-08 TCGA-FG-5962-10A-01D-1893-08 Untested Somatic Phase_I WXS none Illumina GAIIx 28e93aff-9ec4-4fcf-a469-74d8b6190991 57a1f9a5-e7cd-478d-b678-8e1992d9b223 TTTCTCAATGATGCTTGGCTC 0.388 11 110 ANKH 56172 hgsc.bcm.edu;ucsc.edu 37 5 14769169 14769169 + Silent SNP A A G TCGA-FG-5962-01B-11D-1893-08 TCGA-FG-5962-10A-01D-1893-08 Untested Somatic Phase_I WXS none Illumina GAIIx 28e93aff-9ec4-4fcf-a469-74d8b6190991 57a1f9a5-e7cd-478d-b678-8e1992d9b223 TGCTGTTCACAAACACCAGGC 0.572 12 72 MOCS2 4338 hgsc.bcm.edu;broad.mit.edu 37 5 52402983 52402983 + Missense_Mutation SNP A A G TCGA-FG-5962-01B-11D-1893-08 TCGA-FG-5962-10A-01D-1893-08 Untested Somatic Phase_I WXS none Illumina GAIIx 28e93aff-9ec4-4fcf-a469-74d8b6190991 57a1f9a5-e7cd-478d-b678-8e1992d9b223 AAGCACGAGGAGCTGATCTCC 0.408 8 82 RHOBTB3 22836 hgsc.bcm.edu;broad.mit.edu 37 5 95119548 95119548 + Nonsense_Mutation SNP C C T TCGA-FG-5962-01B-11D-1893-08 TCGA-FG-5962-10A-01D-1893-08 Untested Somatic Phase_I WXS none Illumina GAIIx 28e93aff-9ec4-4fcf-a469-74d8b6190991 57a1f9a5-e7cd-478d-b678-8e1992d9b223 CGAGATGTACCAAGTGTCCAG 0.468 16 222 TCOF1 6949 hgsc.bcm.edu;broad.mit.edu 37 5 149755650 149755650 + Silent SNP A A G TCGA-FG-5962-01B-11D-1893-08 TCGA-FG-5962-10A-01D-1893-08 Untested Somatic Phase_I WXS none Illumina GAIIx 28e93aff-9ec4-4fcf-a469-74d8b6190991 57a1f9a5-e7cd-478d-b678-8e1992d9b223 CTCAGGCAAAACCAGCTCTGA 0.572 17 239 MED7 9443 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 5 156566369 156566369 + Missense_Mutation SNP T T C TCGA-FG-5962-01B-11D-1893-08 TCGA-FG-5962-10A-01D-1893-08 Untested Somatic Phase_I WXS none Illumina GAIIx 28e93aff-9ec4-4fcf-a469-74d8b6190991 57a1f9a5-e7cd-478d-b678-8e1992d9b223 TTCTTGAATATTTTCATCCGT 0.438 10 90 PHIP 55023 hgsc.bcm.edu;ucsc.edu 37 6 79713469 79713469 + Missense_Mutation SNP C C G TCGA-FG-5962-01B-11D-1893-08 TCGA-FG-5962-10A-01D-1893-08 Untested Somatic Phase_I WXS none Illumina GAIIx 28e93aff-9ec4-4fcf-a469-74d8b6190991 57a1f9a5-e7cd-478d-b678-8e1992d9b223 GCTACTGGACCCAAAGCCAAA 0.398 5 44 ANKRD46 157567 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 8 101534835 101534835 + Missense_Mutation SNP T T A TCGA-FG-5962-01B-11D-1893-08 TCGA-FG-5962-10A-01D-1893-08 Untested Somatic Phase_I WXS none Illumina GAIIx 28e93aff-9ec4-4fcf-a469-74d8b6190991 57a1f9a5-e7cd-478d-b678-8e1992d9b223 CCCACTCACATAATAAGCAAT 0.488 12 81 RAD21 5885 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 8 117869555 117869555 + Missense_Mutation SNP A A C TCGA-FG-5962-01B-11D-1893-08 TCGA-FG-5962-10A-01D-1893-08 Untested Somatic Phase_I WXS none Illumina GAIIx 28e93aff-9ec4-4fcf-a469-74d8b6190991 57a1f9a5-e7cd-478d-b678-8e1992d9b223 CCTTATATTGATCTTCATATT 0.333 16 126 NOTCH1 4851 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 9 139412675 139412675 + Missense_Mutation SNP T T C TCGA-FG-5962-01B-11D-1893-08 TCGA-FG-5962-10A-01D-1893-08 Untested Somatic Phase_I WXS none Illumina GAIIx 28e93aff-9ec4-4fcf-a469-74d8b6190991 57a1f9a5-e7cd-478d-b678-8e1992d9b223 ATTGACAGGGTTGGTGTCGCA 0.662 4 20 ZCCHC12 170261 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 X 117959418 117959418 + Missense_Mutation SNP G G A TCGA-FG-5962-01B-11D-1893-08 TCGA-FG-5962-10A-01D-1893-08 Untested Somatic Phase_I WXS none Illumina GAIIx 28e93aff-9ec4-4fcf-a469-74d8b6190991 57a1f9a5-e7cd-478d-b678-8e1992d9b223 agtcaatggcgtcctgccaga 0.557 18 84 COL4A6 1288 broad.mit.edu;ucsc.edu 37 X 107402954 107402954 + Missense_Mutation SNP C C T TCGA-FG-5962-01B-11D-1893-08 TCGA-FG-5962-10A-01D-1893-08 Untested Somatic Phase_I WXS none Illumina GAIIx 28e93aff-9ec4-4fcf-a469-74d8b6190991 57a1f9a5-e7cd-478d-b678-8e1992d9b223 GGTGCTGAAGCGGGGCAGACA 0.562 39 116 ARID1A 8289 broad.mit.edu;hgsc.bcm.edu 37 1 27059237 27059237 + Frame_Shift_Del DEL A A - TCGA-FG-5962-01B-11D-1893-08 TCGA-FG-5962-10A-01D-1893-08 Untested Somatic Phase_I WXS none Illumina GAIIx 28e93aff-9ec4-4fcf-a469-74d8b6190991 57a1f9a5-e7cd-478d-b678-8e1992d9b223 AAGGGAGGGCAAGAAGATATG 0.488 19 88 PIK3R1 5295 broad.mit.edu;hgsc.bcm.edu 37 5 67589217 67589222 + In_Frame_Del DEL TTGAAT TTGAAT - TCGA-FG-5962-01B-11D-1893-08 TCGA-FG-5962-10A-01D-1893-08 Untested Somatic Phase_I WXS none Illumina GAIIx 28e93aff-9ec4-4fcf-a469-74d8b6190991 57a1f9a5-e7cd-478d-b678-8e1992d9b223 AGTTCTGTGGTTGAATTAATAAACCA 0.335 24 43