Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_file Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID ref_context gc_content t_alt_count t_ref_count CCDC88B 283234 hgsc.bcm.edu;broad.mit.edu 37 11 64120928 64120928 + Missense_Mutation SNP G G C TCGA-FG-5963-01A-11D-1705-08 TCGA-FG-5963-10A-01D-1705-08 Untested Somatic Phase_I WXS none Illumina GAIIx 22326318-2d69-4163-96f3-2729ac0ed905 8db33879-438e-4e72-a0f5-46f899011432 GCGCAGCCTGGAGAGTCGGGA 0.677 7 19 GUCY2C 2984 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 12 14794127 14794127 + Missense_Mutation SNP G G A rs148314105 TCGA-FG-5963-01A-11D-1705-08 TCGA-FG-5963-10A-01D-1705-08 Untested Somatic Phase_I WXS none Illumina GAIIx 22326318-2d69-4163-96f3-2729ac0ed905 8db33879-438e-4e72-a0f5-46f899011432 TTGGCTTGGCGGAGGTGCTCT 0.498 19 62 TXNDC16 57544 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 14 52922041 52922041 + Splice_Site SNP C C T TCGA-FG-5963-01A-11D-1705-08 TCGA-FG-5963-10A-01D-1705-08 Untested Somatic Phase_I WXS none Illumina GAIIx 22326318-2d69-4163-96f3-2729ac0ed905 8db33879-438e-4e72-a0f5-46f899011432 AACATACTCACAAACATTTCC 0.358 14 44 IGF1R 3480 hgsc.bcm.edu;broad.mit.edu 37 15 99434555 99434555 + Splice_Site SNP G G A TCGA-FG-5963-01A-11D-1705-08 TCGA-FG-5963-10A-01D-1705-08 Untested Somatic Phase_I WXS none Illumina GAIIx 22326318-2d69-4163-96f3-2729ac0ed905 8db33879-438e-4e72-a0f5-46f899011432 TCTCCACAGTGTGCCCAAGCA 0.647 7 11 TP53 7157 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 17 7578458 7578458 + Missense_Mutation SNP G G C TCGA-FG-5963-01A-11D-1705-08 TCGA-FG-5963-10A-01D-1705-08 Untested Somatic Phase_I WXS none Illumina GAIIx 22326318-2d69-4163-96f3-2729ac0ed905 8db33879-438e-4e72-a0f5-46f899011432 GCCATGGCGCGGACGCGGGTG 0.622 20 37 FAM83G 644815 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 17 18874945 18874945 + Silent SNP G G A TCGA-FG-5963-01A-11D-1705-08 TCGA-FG-5963-10A-01D-1705-08 Untested Somatic Phase_I WXS none Illumina GAIIx 22326318-2d69-4163-96f3-2729ac0ed905 8db33879-438e-4e72-a0f5-46f899011432 CTGGGCCAGCGTTTCTGGTAG 0.642 10 43 NF1 4763 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 17 29677227 29677227 + Nonsense_Mutation SNP C C T TCGA-FG-5963-01A-11D-1705-08 TCGA-FG-5963-10A-01D-1705-08 Untested Somatic Phase_I WXS none Illumina GAIIx 22326318-2d69-4163-96f3-2729ac0ed905 8db33879-438e-4e72-a0f5-46f899011432 TGAAGAAGTTCGAAGTCGCTG 0.363 26 104 MAPRE2 10982 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 18 32677539 32677539 + Missense_Mutation SNP G G T TCGA-FG-5963-01A-11D-1705-08 TCGA-FG-5963-10A-01D-1705-08 Untested Somatic Phase_I WXS none Illumina GAIIx 22326318-2d69-4163-96f3-2729ac0ed905 8db33879-438e-4e72-a0f5-46f899011432 TCATTTAAGCGAATGAACGTT 0.343 8 36 DYM 54808 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 18 46812851 46812851 + Missense_Mutation SNP G G A TCGA-FG-5963-01A-11D-1705-08 TCGA-FG-5963-10A-01D-1705-08 Untested Somatic Phase_I WXS none Illumina GAIIx 22326318-2d69-4163-96f3-2729ac0ed905 8db33879-438e-4e72-a0f5-46f899011432 GGGGTTTGGCGCATCTGAGGC 0.488 17 117 LILRA1 11024 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 19 55107882 55107882 + Missense_Mutation SNP G G A TCGA-FG-5963-01A-11D-1705-08 TCGA-FG-5963-10A-01D-1705-08 Untested Somatic Phase_I WXS none Illumina GAIIx 22326318-2d69-4163-96f3-2729ac0ed905 8db33879-438e-4e72-a0f5-46f899011432 GGGACCTACAGGTGCTACGGC 0.587 22 100 LMF2 91289 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 22 50943889 50943889 + Missense_Mutation SNP C C A TCGA-FG-5963-01A-11D-1705-08 TCGA-FG-5963-10A-01D-1705-08 Untested Somatic Phase_I WXS none Illumina GAIIx 22326318-2d69-4163-96f3-2729ac0ed905 8db33879-438e-4e72-a0f5-46f899011432 AAGTAGTGCACAGTGCCATAG 0.662 21 96 KIDINS220 57498 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 2 8958894 8958894 + Silent SNP G G A TCGA-FG-5963-01A-11D-1705-08 TCGA-FG-5963-10A-01D-1705-08 Untested Somatic Phase_I WXS none Illumina GAIIx 22326318-2d69-4163-96f3-2729ac0ed905 8db33879-438e-4e72-a0f5-46f899011432 TGCCTTGTTCGGCAGCTATCA 0.328 21 80 USP37 57695 hgsc.bcm.edu;broad.mit.edu 37 2 219418446 219418446 + Splice_Site SNP A A G TCGA-FG-5963-01A-11D-1705-08 TCGA-FG-5963-10A-01D-1705-08 Untested Somatic Phase_I WXS none Illumina GAIIx 22326318-2d69-4163-96f3-2729ac0ed905 8db33879-438e-4e72-a0f5-46f899011432 GTTATGACTTAGCTAATCAAG 0.318 3 50 CCDC66 285331 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 3 56627603 56627603 + Missense_Mutation SNP A A G TCGA-FG-5963-01A-11D-1705-08 TCGA-FG-5963-10A-01D-1705-08 Untested Somatic Phase_I WXS none Illumina GAIIx 22326318-2d69-4163-96f3-2729ac0ed905 8db33879-438e-4e72-a0f5-46f899011432 CTCTCAGTCAACACACAAACA 0.453 10 53 MYLK 4638 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 3 123444812 123444812 + Missense_Mutation SNP G G A TCGA-FG-5963-01A-11D-1705-08 TCGA-FG-5963-10A-01D-1705-08 Untested Somatic Phase_I WXS none Illumina GAIIx 22326318-2d69-4163-96f3-2729ac0ed905 8db33879-438e-4e72-a0f5-46f899011432 CAAGTGATCCGGGGCACTGGG 0.617 12 22 UMPS 7372 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 3 124449455 124449455 + Missense_Mutation SNP G G T TCGA-FG-5963-01A-11D-1705-08 TCGA-FG-5963-10A-01D-1705-08 Untested Somatic Phase_I WXS none Illumina GAIIx 22326318-2d69-4163-96f3-2729ac0ed905 8db33879-438e-4e72-a0f5-46f899011432 ATCGTGTCTCGACCGCGTCTT 0.587 12 36 ZNF630 57232 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 X 47920207 47920207 + Missense_Mutation SNP C C A TCGA-FG-5963-01A-11D-1705-08 TCGA-FG-5963-10A-01D-1705-08 Untested Somatic Phase_I WXS none Illumina GAIIx 22326318-2d69-4163-96f3-2729ac0ed905 8db33879-438e-4e72-a0f5-46f899011432 CCCACGGAGACCAGGTGATTA 0.483 7 4 GSPT2 23708 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 X 51488255 51488255 + Missense_Mutation SNP T T A TCGA-FG-5963-01A-11D-1705-08 TCGA-FG-5963-10A-01D-1705-08 Untested Somatic Phase_I WXS none Illumina GAIIx 22326318-2d69-4163-96f3-2729ac0ed905 8db33879-438e-4e72-a0f5-46f899011432 TACTTTGTGATCCTAGTAACC 0.418 24 25 ATRX 546 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 X 76813115 76813115 + Splice_Site SNP C C T TCGA-FG-5963-01A-11D-1705-08 TCGA-FG-5963-10A-01D-1705-08 Untested Somatic Phase_I WXS none Illumina GAIIx 22326318-2d69-4163-96f3-2729ac0ed905 8db33879-438e-4e72-a0f5-46f899011432 TTCCATGGTTCCCTTTGTAAA 0.328 20 27 COL22A1 169044 broad.mit.edu;ucsc.edu 37 8 139636001 139636001 + Missense_Mutation SNP C C T TCGA-FG-5963-01A-11D-1705-08 TCGA-FG-5963-10A-01D-1705-08 Untested Somatic Phase_I WXS none Illumina GAIIx 22326318-2d69-4163-96f3-2729ac0ed905 8db33879-438e-4e72-a0f5-46f899011432 CCCGGCTTTCCATCTCTGCCC 0.448 50 270 MAP4K4 9448 broad.mit.edu;ucsc.edu 37 2 102503626 102503626 + Missense_Mutation SNP A A G TCGA-FG-5963-01A-11D-1705-08 TCGA-FG-5963-10A-01D-1705-08 Untested Somatic Phase_I WXS none Illumina GAIIx 22326318-2d69-4163-96f3-2729ac0ed905 8db33879-438e-4e72-a0f5-46f899011432 AAAGTGATCTATGGATCCTGT 0.423 3 18 ITGA2B 3674 broad.mit.edu;ucsc.edu 37 17 42455842 42455842 + Missense_Mutation SNP A A C TCGA-FG-5963-01A-11D-1705-08 TCGA-FG-5963-10A-01D-1705-08 Untested Somatic Phase_I WXS none Illumina GAIIx 22326318-2d69-4163-96f3-2729ac0ed905 8db33879-438e-4e72-a0f5-46f899011432 CAGCTCCAGGACATTATCTGC 0.657 4 17 ACACA 31 broad.mit.edu;ucsc.edu 37 17 35580444 35580444 + Missense_Mutation SNP C C T TCGA-FG-5963-01A-11D-1705-08 TCGA-FG-5963-10A-01D-1705-08 Untested Somatic Phase_I WXS none Illumina GAIIx 22326318-2d69-4163-96f3-2729ac0ed905 8db33879-438e-4e72-a0f5-46f899011432 TCCAGAGCTGCCATCCTCACT 0.403 20 126 MYH2 4620 broad.mit.edu;ucsc.edu 37 17 10442867 10442867 + Missense_Mutation SNP G G A TCGA-FG-5963-01A-11D-1705-08 TCGA-FG-5963-10A-01D-1705-08 Untested Somatic Phase_I WXS none Illumina GAIIx 22326318-2d69-4163-96f3-2729ac0ed905 8db33879-438e-4e72-a0f5-46f899011432 GAGGTAGGCCGCCTTGTCAGC 0.428 38 52 CAPN3 825 broad.mit.edu;ucsc.edu 37 15 42676717 42676717 + Missense_Mutation SNP G G T TCGA-FG-5963-01A-11D-1705-08 TCGA-FG-5963-10A-01D-1705-08 Untested Somatic Phase_I WXS none Illumina GAIIx 22326318-2d69-4163-96f3-2729ac0ed905 8db33879-438e-4e72-a0f5-46f899011432 CATTGATGGAGCCAACAGAAC 0.433 25 95 NF1 4763 broad.mit.edu;hgsc.bcm.edu 37 17 29683983 29683984 + Frame_Shift_Ins INS - - A TCGA-FG-5963-01A-11D-1705-08 TCGA-FG-5963-10A-01D-1705-08 Untested Somatic Phase_I WXS none Illumina GAIIx 22326318-2d69-4163-96f3-2729ac0ed905 8db33879-438e-4e72-a0f5-46f899011432 TGCAGAAACTCAGAGGATTTCC 0.371 37 194