Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	ref_context	gc_content	t_alt_count	t_ref_count
TSPAN16	26526	hgsc.bcm.edu;broad.mit.edu	37	19	11417342	11417342	+	Silent	SNP	G	G	A			TCGA-FG-6691-01A-11D-1893-08	TCGA-FG-6691-10A-01D-1893-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4d309c4d-9bb3-48ee-a662-c9aec672fcbd	4587f277-e82b-4c27-94ad-ae5de4bc706f	AAATGACAACGGGCCACACCT	0.488	6	71
VIT	5212	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	2	37032683	37032683	+	Missense_Mutation	SNP	C	C	T			TCGA-FG-6691-01A-11D-1893-08	TCGA-FG-6691-10A-01D-1893-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4d309c4d-9bb3-48ee-a662-c9aec672fcbd	4587f277-e82b-4c27-94ad-ae5de4bc706f	GGCTGGCCCACGGACAAAGTG	0.502	16	95
DYNC2LI1	51626	hgsc.bcm.edu;broad.mit.edu	37	2	44021694	44021694	+	Missense_Mutation	SNP	A	A	G			TCGA-FG-6691-01A-11D-1893-08	TCGA-FG-6691-10A-01D-1893-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4d309c4d-9bb3-48ee-a662-c9aec672fcbd	4587f277-e82b-4c27-94ad-ae5de4bc706f	CATGTAGACAAAGTGATAATG	0.408	5	72
IDH1	3417	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	2	209113113	209113113	+	Missense_Mutation	SNP	G	G	T	rs121913499		TCGA-FG-6691-01A-11D-1893-08	TCGA-FG-6691-10A-01D-1893-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4d309c4d-9bb3-48ee-a662-c9aec672fcbd	4587f277-e82b-4c27-94ad-ae5de4bc706f	TAAGCATGACGACCTATGATG	0.398	24	43
MUC7	4589	hgsc.bcm.edu;broad.mit.edu	37	4	71347534	71347534	+	Missense_Mutation	SNP	G	G	A	rs145866670		TCGA-FG-6691-01A-11D-1893-08	TCGA-FG-6691-10A-01D-1893-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4d309c4d-9bb3-48ee-a662-c9aec672fcbd	4587f277-e82b-4c27-94ad-ae5de4bc706f	AAAATTTCTCGATTTCTTTTA	0.358	5	70
GM2A	2760	hgsc.bcm.edu;ucsc.edu	37	5	150639446	150639446	+	Missense_Mutation	SNP	G	G	T			TCGA-FG-6691-01A-11D-1893-08	TCGA-FG-6691-10A-01D-1893-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4d309c4d-9bb3-48ee-a662-c9aec672fcbd	4587f277-e82b-4c27-94ad-ae5de4bc706f	GTCATGGGCAGCACCAGTGTC	0.597	8	27
LONRF1	91694	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	8	12595574	12595574	+	Missense_Mutation	SNP	T	T	C			TCGA-FG-6691-01A-11D-1893-08	TCGA-FG-6691-10A-01D-1893-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4d309c4d-9bb3-48ee-a662-c9aec672fcbd	4587f277-e82b-4c27-94ad-ae5de4bc706f	AGGTCTGTTTTTAGTACATGG	0.363	16	43
HIVEP3	59269	broad.mit.edu;ucsc.edu	37	1	42049093	42049093	+	Missense_Mutation	SNP	G	G	A			TCGA-FG-6691-01A-11D-1893-08	TCGA-FG-6691-10A-01D-1893-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4d309c4d-9bb3-48ee-a662-c9aec672fcbd	4587f277-e82b-4c27-94ad-ae5de4bc706f	GATCACCTGCGTCCGGGGTAC	0.637	12	49
IGHV2-26	28455	broad.mit.edu;ucsc.edu	37	14	106757779	106757779	+	RNA	SNP	G	G	A			TCGA-FG-6691-01A-11D-1893-08	TCGA-FG-6691-10A-01D-1893-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4d309c4d-9bb3-48ee-a662-c9aec672fcbd	4587f277-e82b-4c27-94ad-ae5de4bc706f	AGGATTTTTCGTCATTCGAAA	0.532	26	60
SEMA7A	8482	broad.mit.edu;ucsc.edu	37	15	74709961	74709961	+	Missense_Mutation	SNP	G	G	A	rs140327601		TCGA-FG-6691-01A-11D-1893-08	TCGA-FG-6691-10A-01D-1893-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4d309c4d-9bb3-48ee-a662-c9aec672fcbd	4587f277-e82b-4c27-94ad-ae5de4bc706f	GTTCTCGTCCGGGCTGAAGGG	0.612	16	34
TP53	7157	broad.mit.edu;hgsc.bcm.edu	37	17	7578444	7578449	+	In_Frame_Del	DEL	GATGGC	GATGGC	-			TCGA-FG-6691-01A-11D-1893-08	TCGA-FG-6691-10A-01D-1893-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4d309c4d-9bb3-48ee-a662-c9aec672fcbd	4587f277-e82b-4c27-94ad-ae5de4bc706f	ACTGCTTGTAGATGGCCATGGCGCGG	0.631	38	25
ATRX	546	broad.mit.edu;hgsc.bcm.edu	37	X	76939673	76939674	+	Frame_Shift_Ins	INS	-	-	T			TCGA-FG-6691-01A-11D-1893-08	TCGA-FG-6691-10A-01D-1893-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4d309c4d-9bb3-48ee-a662-c9aec672fcbd	4587f277-e82b-4c27-94ad-ae5de4bc706f	GTCTCAATCAGTTTTTTTGCCT	0.366	53	97