Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_file Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID ref_context gc_content t_alt_count t_ref_count ANKRD26 22852 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 10 27381396 27381396 + Missense_Mutation SNP G G C TCGA-FG-7637-01A-11D-2086-08 TCGA-FG-7637-10A-01D-2086-08 Untested Somatic Phase_I WXS none Illumina GAIIx aea26718-ba34-444f-9122-0faf73b62ea1 c2346512-f289-4ac1-a8c9-460c4f3f0126 TCCACCATTTGCTGCTTTTTT 0.323 7 28 TLL2 7093 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 10 98144479 98144479 + Missense_Mutation SNP C C T rs141438733 TCGA-FG-7637-01A-11D-2086-08 TCGA-FG-7637-10A-01D-2086-08 Untested Somatic Phase_I WXS none Illumina GAIIx aea26718-ba34-444f-9122-0faf73b62ea1 c2346512-f289-4ac1-a8c9-460c4f3f0126 AGCTTGGCGTCGGGGGACAGG 0.622 73 114 MGEA5 10724 hgsc.bcm.edu;broad.mit.edu 37 10 103577687 103577687 + Silent SNP C C A TCGA-FG-7637-01A-11D-2086-08 TCGA-FG-7637-10A-01D-2086-08 Untested Somatic Phase_I WXS none Illumina GAIIx aea26718-ba34-444f-9122-0faf73b62ea1 c2346512-f289-4ac1-a8c9-460c4f3f0126 GAGCTGCCGGCGGCTCCAGCG 0.726 8 7 CUEDC2 79004 hgsc.bcm.edu;broad.mit.edu 37 10 104184887 104184887 + Missense_Mutation SNP G G A TCGA-FG-7637-01A-11D-2086-08 TCGA-FG-7637-10A-01D-2086-08 Untested Somatic Phase_I WXS none Illumina GAIIx aea26718-ba34-444f-9122-0faf73b62ea1 c2346512-f289-4ac1-a8c9-460c4f3f0126 GTCGGCCTCCGGGAGGTGTGT 0.602 6 84 MUC2 4583 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 11 1087506 1087506 + Missense_Mutation SNP G G A TCGA-FG-7637-01A-11D-2086-08 TCGA-FG-7637-10A-01D-2086-08 Untested Somatic Phase_I WXS none Illumina GAIIx aea26718-ba34-444f-9122-0faf73b62ea1 c2346512-f289-4ac1-a8c9-460c4f3f0126 GACACGGGTGGGGACTGTGAG 0.652 15 31 OR5D18 219438 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 11 55587473 55587473 + Missense_Mutation SNP G G A TCGA-FG-7637-01A-11D-2086-08 TCGA-FG-7637-10A-01D-2086-08 Untested Somatic Phase_I WXS none Illumina GAIIx aea26718-ba34-444f-9122-0faf73b62ea1 c2346512-f289-4ac1-a8c9-460c4f3f0126 GCCTATGACCGCTTCGTGGCC 0.458 44 143 INPPL1 3636 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 11 71942617 71942617 + Missense_Mutation SNP G G A TCGA-FG-7637-01A-11D-2086-08 TCGA-FG-7637-10A-01D-2086-08 Untested Somatic Phase_I WXS none Illumina GAIIx aea26718-ba34-444f-9122-0faf73b62ea1 c2346512-f289-4ac1-a8c9-460c4f3f0126 TATCAGCCATGTCAGTACGTC 0.562 32 73 C12orf50 0 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 12 88390403 88390403 + Missense_Mutation SNP T T C TCGA-FG-7637-01A-11D-2086-08 TCGA-FG-7637-10A-01D-2086-08 Untested Somatic Phase_I WXS none Illumina GAIIx aea26718-ba34-444f-9122-0faf73b62ea1 c2346512-f289-4ac1-a8c9-460c4f3f0126 TCAGGGGTCTTTGTCCATAAA 0.289 10 59 GPR180 160897 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 13 95273351 95273351 + Silent SNP A A G TCGA-FG-7637-01A-11D-2086-08 TCGA-FG-7637-10A-01D-2086-08 Untested Somatic Phase_I WXS none Illumina GAIIx aea26718-ba34-444f-9122-0faf73b62ea1 c2346512-f289-4ac1-a8c9-460c4f3f0126 TCGCTTCCCAAATTCAGATGT 0.373 12 51 HEATR5A 25938 hgsc.bcm.edu;ucsc.edu 37 14 31833463 31833463 + Missense_Mutation SNP G G A TCGA-FG-7637-01A-11D-2086-08 TCGA-FG-7637-10A-01D-2086-08 Untested Somatic Phase_I WXS none Illumina GAIIx aea26718-ba34-444f-9122-0faf73b62ea1 c2346512-f289-4ac1-a8c9-460c4f3f0126 CACTGACGGTGTTTTCAAAGG 0.294 7 3 SEL1L 6400 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 14 81946063 81946063 + Missense_Mutation SNP A A C TCGA-FG-7637-01A-11D-2086-08 TCGA-FG-7637-10A-01D-2086-08 Untested Somatic Phase_I WXS none Illumina GAIIx aea26718-ba34-444f-9122-0faf73b62ea1 c2346512-f289-4ac1-a8c9-460c4f3f0126 ATGTCATAAAAACGTTTCGCA 0.383 11 62 ABCA3 21 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 16 2374516 2374516 + Silent SNP G G A rs138952710 by1000genomes TCGA-FG-7637-01A-11D-2086-08 TCGA-FG-7637-10A-01D-2086-08 Untested Somatic Phase_I WXS none Illumina GAIIx aea26718-ba34-444f-9122-0faf73b62ea1 c2346512-f289-4ac1-a8c9-460c4f3f0126 AGTCCTTCTCGGAGGGAAAGC 0.587 26 53 ARID1A 8289 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 1 27100381 27100381 + Nonsense_Mutation SNP C C T TCGA-FG-7637-01A-11D-2086-08 TCGA-FG-7637-10A-01D-2086-08 Untested Somatic Phase_I WXS none Illumina GAIIx aea26718-ba34-444f-9122-0faf73b62ea1 c2346512-f289-4ac1-a8c9-460c4f3f0126 GTATCAACAGCAACAGCAGGT 0.498 63 109 TRMT13 54482 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 1 100613719 100613719 + Missense_Mutation SNP T T G TCGA-FG-7637-01A-11D-2086-08 TCGA-FG-7637-10A-01D-2086-08 Untested Somatic Phase_I WXS none Illumina GAIIx aea26718-ba34-444f-9122-0faf73b62ea1 c2346512-f289-4ac1-a8c9-460c4f3f0126 GGAATTCCATTATTTCCAGCG 0.428 34 10 FTCD 10841 hgsc.bcm.edu;broad.mit.edu 37 21 47574183 47574183 + Missense_Mutation SNP C C T TCGA-FG-7637-01A-11D-2086-08 TCGA-FG-7637-10A-01D-2086-08 Untested Somatic Phase_I WXS none Illumina GAIIx aea26718-ba34-444f-9122-0faf73b62ea1 c2346512-f289-4ac1-a8c9-460c4f3f0126 GAAGGGCCTGCGTCCACATCC 0.677 3 48 IDH1 3417 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 2 209113112 209113112 + Missense_Mutation SNP C C T rs121913500 TCGA-FG-7637-01A-11D-2086-08 TCGA-FG-7637-10A-01D-2086-08 Untested Somatic Phase_I WXS none Illumina GAIIx aea26718-ba34-444f-9122-0faf73b62ea1 c2346512-f289-4ac1-a8c9-460c4f3f0126 ATAAGCATGACGACCTATGAT 0.393 45 54 PTPN23 25930 hgsc.bcm.edu;broad.mit.edu 37 3 47447437 47447437 + Nonsense_Mutation SNP C C A TCGA-FG-7637-01A-11D-2086-08 TCGA-FG-7637-10A-01D-2086-08 Untested Somatic Phase_I WXS none Illumina GAIIx aea26718-ba34-444f-9122-0faf73b62ea1 c2346512-f289-4ac1-a8c9-460c4f3f0126 ATTTCCAGTGCGCAGCCGGCG 0.597 4 51 PIGZ 80235 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 3 196675277 196675277 + Missense_Mutation SNP C C A TCGA-FG-7637-01A-11D-2086-08 TCGA-FG-7637-10A-01D-2086-08 Untested Somatic Phase_I WXS none Illumina GAIIx aea26718-ba34-444f-9122-0faf73b62ea1 c2346512-f289-4ac1-a8c9-460c4f3f0126 GACGTAGGAACCAGACAGCAG 0.617 11 33 FRAS1 80144 hgsc.bcm.edu;broad.mit.edu 37 4 79204003 79204003 + Nonsense_Mutation SNP C C A TCGA-FG-7637-01A-11D-2086-08 TCGA-FG-7637-10A-01D-2086-08 Untested Somatic Phase_I WXS none Illumina GAIIx aea26718-ba34-444f-9122-0faf73b62ea1 c2346512-f289-4ac1-a8c9-460c4f3f0126 ATGGCCCTTGCAAGGTGTGTG 0.532 8 132 NPNT 255743 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 4 106890076 106890076 + Missense_Mutation SNP C C A rs139540458 TCGA-FG-7637-01A-11D-2086-08 TCGA-FG-7637-10A-01D-2086-08 Untested Somatic Phase_I WXS none Illumina GAIIx aea26718-ba34-444f-9122-0faf73b62ea1 c2346512-f289-4ac1-a8c9-460c4f3f0126 TGAAAAAAGGCGTGGTCACAC 0.448 16 19 PPP2CA 5515 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 5 133534841 133534841 + Missense_Mutation SNP A A T TCGA-FG-7637-01A-11D-2086-08 TCGA-FG-7637-10A-01D-2086-08 Untested Somatic Phase_I WXS none Illumina GAIIx aea26718-ba34-444f-9122-0faf73b62ea1 c2346512-f289-4ac1-a8c9-460c4f3f0126 CGATAACAATAGTTTGGAGCA 0.373 16 113 KIF20A 10112 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 5 137521298 137521298 + Missense_Mutation SNP G G A TCGA-FG-7637-01A-11D-2086-08 TCGA-FG-7637-10A-01D-2086-08 Untested Somatic Phase_I WXS none Illumina GAIIx aea26718-ba34-444f-9122-0faf73b62ea1 c2346512-f289-4ac1-a8c9-460c4f3f0126 TTGGCCCTACGGCGGTCACAA 0.507 52 145 BAG6 7917 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 6 31612853 31612853 + Missense_Mutation SNP A A C TCGA-FG-7637-01A-11D-2086-08 TCGA-FG-7637-10A-01D-2086-08 Untested Somatic Phase_I WXS none Illumina GAIIx aea26718-ba34-444f-9122-0faf73b62ea1 c2346512-f289-4ac1-a8c9-460c4f3f0126 AGGACTCGACATTGGTAGAAG 0.662 58 76 DST 667 hgsc.bcm.edu;ucsc.edu 37 6 56483940 56483940 + Missense_Mutation SNP T T G TCGA-FG-7637-01A-11D-2086-08 TCGA-FG-7637-10A-01D-2086-08 Untested Somatic Phase_I WXS none Illumina GAIIx aea26718-ba34-444f-9122-0faf73b62ea1 c2346512-f289-4ac1-a8c9-460c4f3f0126 TTTATGCAAGTGTTCATTTGT 0.348 25 155 RFX6 222546 hgsc.bcm.edu;broad.mit.edu 37 6 117246787 117246787 + Missense_Mutation SNP T T A TCGA-FG-7637-01A-11D-2086-08 TCGA-FG-7637-10A-01D-2086-08 Untested Somatic Phase_I WXS none Illumina GAIIx aea26718-ba34-444f-9122-0faf73b62ea1 c2346512-f289-4ac1-a8c9-460c4f3f0126 CTGCACCAGTTCCCTGCTGGG 0.532 6 67 SRPK2 6733 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 7 104783594 104783594 + Missense_Mutation SNP C C T TCGA-FG-7637-01A-11D-2086-08 TCGA-FG-7637-10A-01D-2086-08 Untested Somatic Phase_I WXS none Illumina GAIIx aea26718-ba34-444f-9122-0faf73b62ea1 c2346512-f289-4ac1-a8c9-460c4f3f0126 AGTTTCACCTCTGGGCAGTAT 0.498 17 99 RAB11FIP1 80223 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 8 37730001 37730001 + Silent SNP G G A TCGA-FG-7637-01A-11D-2086-08 TCGA-FG-7637-10A-01D-2086-08 Untested Somatic Phase_I WXS none Illumina GAIIx aea26718-ba34-444f-9122-0faf73b62ea1 c2346512-f289-4ac1-a8c9-460c4f3f0126 TGGGAAGAGGGGGCGCCACTT 0.557 30 80 LIMA1 51474 broad.mit.edu;ucsc.edu 37 12 50598436 50598436 + Nonsense_Mutation SNP G G A TCGA-FG-7637-01A-11D-2086-08 TCGA-FG-7637-10A-01D-2086-08 Untested Somatic Phase_I WXS none Illumina GAIIx aea26718-ba34-444f-9122-0faf73b62ea1 c2346512-f289-4ac1-a8c9-460c4f3f0126 TCCAGATTTCGTCTACTCTCA 0.423 56 71 OR2G6 391211 broad.mit.edu;ucsc.edu 37 1 248685220 248685220 + Silent SNP C C T TCGA-FG-7637-01A-11D-2086-08 TCGA-FG-7637-10A-01D-2086-08 Untested Somatic Phase_I WXS none Illumina GAIIx aea26718-ba34-444f-9122-0faf73b62ea1 c2346512-f289-4ac1-a8c9-460c4f3f0126 AAGACAAAACCATGAGCTACG 0.517 63 94 TOM1 10043 broad.mit.edu;ucsc.edu 37 22 35726358 35726358 + Missense_Mutation SNP C C G TCGA-FG-7637-01A-11D-2086-08 TCGA-FG-7637-10A-01D-2086-08 Untested Somatic Phase_I WXS none Illumina GAIIx aea26718-ba34-444f-9122-0faf73b62ea1 c2346512-f289-4ac1-a8c9-460c4f3f0126 CCGCACGTGCCGAGCCATGCA 0.537 96 90 HEATR1 55127 broad.mit.edu;ucsc.edu 37 1 236738051 236738051 + Silent SNP C C T rs142628625 byFrequency TCGA-FG-7637-01A-11D-2086-08 TCGA-FG-7637-10A-01D-2086-08 Untested Somatic Phase_I WXS none Illumina GAIIx aea26718-ba34-444f-9122-0faf73b62ea1 c2346512-f289-4ac1-a8c9-460c4f3f0126 CTAGACTCTTCGGATCCTCAT 0.423 28 43 NLE1 54475 broad.mit.edu;ucsc.edu 37 17 33464163 33464163 + Missense_Mutation SNP G G A TCGA-FG-7637-01A-11D-2086-08 TCGA-FG-7637-10A-01D-2086-08 Untested Somatic Phase_I WXS none Illumina GAIIx aea26718-ba34-444f-9122-0faf73b62ea1 c2346512-f289-4ac1-a8c9-460c4f3f0126 TCCCAGATCCGCACACTGCCA 0.617 18 33 ARID1A 8289 broad.mit.edu 37 1 27106229 27106230 + Frame_Shift_Del DEL AG AG - TCGA-FG-7637-01A-11D-2086-08 TCGA-FG-7637-10A-01D-2086-08 Untested Somatic Phase_I WXS none Illumina GAIIx aea26718-ba34-444f-9122-0faf73b62ea1 c2346512-f289-4ac1-a8c9-460c4f3f0126 AGCCCAGCACAGAGCCACCGGA 0.53 22 137