Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	ref_context	gc_content	t_alt_count	t_ref_count
DPY19L2	283417	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	12	64057543	64057543	+	Missense_Mutation	SNP	C	C	T			TCGA-FG-7638-01B-11D-2086-08	TCGA-FG-7638-10A-01D-2086-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	74d72784-51c3-4879-8e4d-62fabd342a30	e26e7062-cc3e-445b-8d2b-64726bfcc8ba	CTAACCATTTCAGTGCGAAAA	0.333	33	72
TMEM19	55266	hgsc.bcm.edu;broad.mit.edu	37	12	72091160	72091160	+	Silent	SNP	C	C	T			TCGA-FG-7638-01B-11D-2086-08	TCGA-FG-7638-10A-01D-2086-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	74d72784-51c3-4879-8e4d-62fabd342a30	e26e7062-cc3e-445b-8d2b-64726bfcc8ba	AAATCCCAGTCGATTTTTCCA	0.532	8	104
DNAH9	1770	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	17	11554444	11554444	+	Missense_Mutation	SNP	C	C	A			TCGA-FG-7638-01B-11D-2086-08	TCGA-FG-7638-10A-01D-2086-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	74d72784-51c3-4879-8e4d-62fabd342a30	e26e7062-cc3e-445b-8d2b-64726bfcc8ba	AAACACATGCCTGAGACAGCA	0.433	89	134
CIC	23152	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	19	42791757	42791757	+	Missense_Mutation	SNP	C	C	T			TCGA-FG-7638-01B-11D-2086-08	TCGA-FG-7638-10A-01D-2086-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	74d72784-51c3-4879-8e4d-62fabd342a30	e26e7062-cc3e-445b-8d2b-64726bfcc8ba	CAAGCGGCACCGGGCCCTGGT	0.612	39	24
CIC	23152	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	19	42793431	42793431	+	Silent	SNP	G	G	A			TCGA-FG-7638-01B-11D-2086-08	TCGA-FG-7638-10A-01D-2086-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	74d72784-51c3-4879-8e4d-62fabd342a30	e26e7062-cc3e-445b-8d2b-64726bfcc8ba	GTGCCTTGGCGGCCACTGGGC	0.637	27	10
GTF3C3	9330	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	2	197657737	197657737	+	Silent	SNP	C	C	T			TCGA-FG-7638-01B-11D-2086-08	TCGA-FG-7638-10A-01D-2086-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	74d72784-51c3-4879-8e4d-62fabd342a30	e26e7062-cc3e-445b-8d2b-64726bfcc8ba	ATACATCGCCCGCAGTGGGTT	0.403	25	45
IDH1	3417	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	2	209113112	209113112	+	Missense_Mutation	SNP	C	C	T	rs121913500		TCGA-FG-7638-01B-11D-2086-08	TCGA-FG-7638-10A-01D-2086-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	74d72784-51c3-4879-8e4d-62fabd342a30	e26e7062-cc3e-445b-8d2b-64726bfcc8ba	ATAAGCATGACGACCTATGAT	0.393	36	66
ZPLD1	131368	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	3	102181219	102181219	+	Missense_Mutation	SNP	G	G	A	rs150699636		TCGA-FG-7638-01B-11D-2086-08	TCGA-FG-7638-10A-01D-2086-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	74d72784-51c3-4879-8e4d-62fabd342a30	e26e7062-cc3e-445b-8d2b-64726bfcc8ba	AATTTGGATGGCAGGTAATTT	0.358	24	32
ZFAND5	7763	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	9	74970965	74970965	+	Silent	SNP	G	G	A			TCGA-FG-7638-01B-11D-2086-08	TCGA-FG-7638-10A-01D-2086-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	74d72784-51c3-4879-8e4d-62fabd342a30	e26e7062-cc3e-445b-8d2b-64726bfcc8ba	AGTTGTGCTTGTCAGAGTAAC	0.378	34	45
ST6GALNAC4	27090	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	9	130672316	130672316	+	Silent	SNP	G	G	C			TCGA-FG-7638-01B-11D-2086-08	TCGA-FG-7638-10A-01D-2086-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	74d72784-51c3-4879-8e4d-62fabd342a30	e26e7062-cc3e-445b-8d2b-64726bfcc8ba	AGCCGGTGCTGAGGAAGGAGC	0.642	17	42
NOTCH1	4851	hgsc.bcm.edu;broad.mit.edu	37	9	139412302	139412302	+	Missense_Mutation	SNP	C	C	A			TCGA-FG-7638-01B-11D-2086-08	TCGA-FG-7638-10A-01D-2086-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	74d72784-51c3-4879-8e4d-62fabd342a30	e26e7062-cc3e-445b-8d2b-64726bfcc8ba	GATCTCGCATCGGGGGCCCGT	0.647	7	100
KAL1	3730	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	X	8503844	8503844	+	Missense_Mutation	SNP	G	G	T			TCGA-FG-7638-01B-11D-2086-08	TCGA-FG-7638-10A-01D-2086-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	74d72784-51c3-4879-8e4d-62fabd342a30	e26e7062-cc3e-445b-8d2b-64726bfcc8ba	ACCTTAGAAAGAACATGACCT	0.483	24	49
USP11	8237	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	X	47104794	47104794	+	Missense_Mutation	SNP	G	G	A			TCGA-FG-7638-01B-11D-2086-08	TCGA-FG-7638-10A-01D-2086-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	74d72784-51c3-4879-8e4d-62fabd342a30	e26e7062-cc3e-445b-8d2b-64726bfcc8ba	GACTGCGTCGGGTACGTGATG	0.597	19	50
ATRX	546	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	X	76937357	76937357	+	Missense_Mutation	SNP	T	T	C			TCGA-FG-7638-01B-11D-2086-08	TCGA-FG-7638-10A-01D-2086-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	74d72784-51c3-4879-8e4d-62fabd342a30	e26e7062-cc3e-445b-8d2b-64726bfcc8ba	AATTCTATTCTTTTCAGTCTC	0.343	58	71
ARMCX2	9823	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	X	100912542	100912542	+	Silent	SNP	C	C	T			TCGA-FG-7638-01B-11D-2086-08	TCGA-FG-7638-10A-01D-2086-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	74d72784-51c3-4879-8e4d-62fabd342a30	e26e7062-cc3e-445b-8d2b-64726bfcc8ba	CTATCCCCGCCGCTACACAGC	0.567	85	176
GPRIN1	114787	broad.mit.edu;ucsc.edu	37	5	176026758	176026758	+	Silent	SNP	G	G	A			TCGA-FG-7638-01B-11D-2086-08	TCGA-FG-7638-10A-01D-2086-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	74d72784-51c3-4879-8e4d-62fabd342a30	e26e7062-cc3e-445b-8d2b-64726bfcc8ba	GGCAGAAGAAGGCTGTGGGTC	0.642	20	37
LCE5A	254910	broad.mit.edu;ucsc.edu	37	1	152484246	152484246	+	Missense_Mutation	SNP	G	G	A			TCGA-FG-7638-01B-11D-2086-08	TCGA-FG-7638-10A-01D-2086-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	74d72784-51c3-4879-8e4d-62fabd342a30	e26e7062-cc3e-445b-8d2b-64726bfcc8ba	CAGTCCCTCCGACGCCGACCT	0.682	26	37