Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_file Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID ref_context gc_content t_alt_count t_ref_count FERMT3 83706 hgsc.bcm.edu;broad.mit.edu 37 11 63988497 63988497 + Missense_Mutation SNP C C T TCGA-FG-8182-01A-11D-2253-08 TCGA-FG-8182-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx 2aeaab9f-4459-4be8-91e7-e0746cbd671c 705290ff-c3b5-4e53-956d-05fc3825ccb7 GCTCACCCCACGGATCCTGGA 0.652 8 128 EXPH5 23086 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 11 108381318 108381318 + Missense_Mutation SNP C C T TCGA-FG-8182-01A-11D-2253-08 TCGA-FG-8182-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx 2aeaab9f-4459-4be8-91e7-e0746cbd671c 705290ff-c3b5-4e53-956d-05fc3825ccb7 CAGTGGGTTGCACTCCACTGT 0.483 56 47 LRIG3 121227 hgsc.bcm.edu;broad.mit.edu 37 12 59276787 59276787 + Silent SNP G G A TCGA-FG-8182-01A-11D-2253-08 TCGA-FG-8182-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx 2aeaab9f-4459-4be8-91e7-e0746cbd671c 705290ff-c3b5-4e53-956d-05fc3825ccb7 GCTGGCAATCGCACAAAAGGC 0.403 4 70 TP53 7157 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 17 7574012 7574012 + Nonsense_Mutation SNP C C A rs17882252 TCGA-FG-8182-01A-11D-2253-08 TCGA-FG-8182-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx 2aeaab9f-4459-4be8-91e7-e0746cbd671c 705290ff-c3b5-4e53-956d-05fc3825ccb7 CGGAACATCTCGAAGCGCTCA 0.537 12 55 TP53 7157 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 17 7579311 7579311 + Splice_Site SNP C C T rs68140816 TCGA-FG-8182-01A-11D-2253-08 TCGA-FG-8182-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx 2aeaab9f-4459-4be8-91e7-e0746cbd671c 705290ff-c3b5-4e53-956d-05fc3825ccb7 GGGCAACTGACCGTGCAAGTC 0.532 56 67 CWC25 54883 hgsc.bcm.edu;broad.mit.edu 37 17 36958970 36958970 + Silent SNP C C T TCGA-FG-8182-01A-11D-2253-08 TCGA-FG-8182-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx 2aeaab9f-4459-4be8-91e7-e0746cbd671c 705290ff-c3b5-4e53-956d-05fc3825ccb7 ACTTCCCATCCCGGGAGTCCA 0.547 9 114 ERCC1 2067 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 19 45916941 45916941 + Silent SNP A A T TCGA-FG-8182-01A-11D-2253-08 TCGA-FG-8182-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx 2aeaab9f-4459-4be8-91e7-e0746cbd671c 705290ff-c3b5-4e53-956d-05fc3825ccb7 TTACTTTCTGAGGGCCCAGGC 0.522 13 131 DNAJC6 9829 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 1 65858364 65858364 + Silent SNP T T G TCGA-FG-8182-01A-11D-2253-08 TCGA-FG-8182-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx 2aeaab9f-4459-4be8-91e7-e0746cbd671c 705290ff-c3b5-4e53-956d-05fc3825ccb7 CGCCAGCGGCTCCTCCCACCA 0.582 7 56 C20orf26 0 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 20 20123549 20123549 + Missense_Mutation SNP A A T TCGA-FG-8182-01A-11D-2253-08 TCGA-FG-8182-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx 2aeaab9f-4459-4be8-91e7-e0746cbd671c 705290ff-c3b5-4e53-956d-05fc3825ccb7 ATAGTCGAGGAGTTGCAGGAA 0.488 6 19 ADSL 158 hgsc.bcm.edu;broad.mit.edu 37 22 40762494 40762494 + Missense_Mutation SNP G G A TCGA-FG-8182-01A-11D-2253-08 TCGA-FG-8182-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx 2aeaab9f-4459-4be8-91e7-e0746cbd671c 705290ff-c3b5-4e53-956d-05fc3825ccb7 ATATGAAAGCGTGATGAAGGT 0.358 5 55 MYO3B 140469 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 2 171509614 171509614 + Missense_Mutation SNP T T C TCGA-FG-8182-01A-11D-2253-08 TCGA-FG-8182-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx 2aeaab9f-4459-4be8-91e7-e0746cbd671c 705290ff-c3b5-4e53-956d-05fc3825ccb7 AAAAGGAGACTCTTTTGCTCA 0.418 8 71 IDH1 3417 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 2 209113112 209113112 + Missense_Mutation SNP C C T rs121913500 TCGA-FG-8182-01A-11D-2253-08 TCGA-FG-8182-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx 2aeaab9f-4459-4be8-91e7-e0746cbd671c 705290ff-c3b5-4e53-956d-05fc3825ccb7 ATAAGCATGACGACCTATGAT 0.393 34 64 RPL37A 6168 hgsc.bcm.edu;broad.mit.edu 37 2 217364056 217364056 + Missense_Mutation SNP C C T TCGA-FG-8182-01A-11D-2253-08 TCGA-FG-8182-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx 2aeaab9f-4459-4be8-91e7-e0746cbd671c 705290ff-c3b5-4e53-956d-05fc3825ccb7 GGCCTCCCTCCGGAAAATGGT 0.502 8 86 COL6A3 1293 hgsc.bcm.edu;broad.mit.edu 37 2 238277572 238277572 + Missense_Mutation SNP A A G TCGA-FG-8182-01A-11D-2253-08 TCGA-FG-8182-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx 2aeaab9f-4459-4be8-91e7-e0746cbd671c 705290ff-c3b5-4e53-956d-05fc3825ccb7 TTCAGTGGGGACCCCCCTCTG 0.562 5 59 BRD8 10902 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 5 137501597 137501597 + Missense_Mutation SNP T T C TCGA-FG-8182-01A-11D-2253-08 TCGA-FG-8182-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx 2aeaab9f-4459-4be8-91e7-e0746cbd671c 705290ff-c3b5-4e53-956d-05fc3825ccb7 GCAATATCCATCTTCTCAGCC 0.458 9 60 CD109 135228 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 6 74491008 74491008 + Silent SNP T T C TCGA-FG-8182-01A-11D-2253-08 TCGA-FG-8182-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx 2aeaab9f-4459-4be8-91e7-e0746cbd671c 705290ff-c3b5-4e53-956d-05fc3825ccb7 TATTGACAGATGCAAACCTCA 0.323 6 46 MDN1 23195 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 6 90397120 90397120 + Missense_Mutation SNP C C T TCGA-FG-8182-01A-11D-2253-08 TCGA-FG-8182-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx 2aeaab9f-4459-4be8-91e7-e0746cbd671c 705290ff-c3b5-4e53-956d-05fc3825ccb7 AAGATGTTTCCGCAAAGACAA 0.403 13 66 FBXL18 80028 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 7 5540405 5540405 + Missense_Mutation SNP T T C TCGA-FG-8182-01A-11D-2253-08 TCGA-FG-8182-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx 2aeaab9f-4459-4be8-91e7-e0746cbd671c 705290ff-c3b5-4e53-956d-05fc3825ccb7 TTGCGGGGCATGGCGGAGGAG 0.672 19 88 CNTLN 54875 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 9 17236520 17236520 + Silent SNP G G A TCGA-FG-8182-01A-11D-2253-08 TCGA-FG-8182-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx 2aeaab9f-4459-4be8-91e7-e0746cbd671c 705290ff-c3b5-4e53-956d-05fc3825ccb7 TAAATGACCTGGAGAAATTGA 0.368 11 49 VSIG4 11326 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 X 65253475 65253475 + Missense_Mutation SNP G G A TCGA-FG-8182-01A-11D-2253-08 TCGA-FG-8182-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx 2aeaab9f-4459-4be8-91e7-e0746cbd671c 705290ff-c3b5-4e53-956d-05fc3825ccb7 ACATGCAGGCGGCCCTGGTAC 0.547 19 75 UNC93A 54346 broad.mit.edu;ucsc.edu 37 6 167728856 167728856 + Silent SNP C C T TCGA-FG-8182-01A-11D-2253-08 TCGA-FG-8182-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx 2aeaab9f-4459-4be8-91e7-e0746cbd671c 705290ff-c3b5-4e53-956d-05fc3825ccb7 TTGTGGAGTGCGTGGAGTCCA 0.542 30 360 IGFBP2 3485 broad.mit.edu;ucsc.edu 37 2 217525369 217525369 + Missense_Mutation SNP C C T TCGA-FG-8182-01A-11D-2253-08 TCGA-FG-8182-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx 2aeaab9f-4459-4be8-91e7-e0746cbd671c 705290ff-c3b5-4e53-956d-05fc3825ccb7 CAGTGCTGGCCGGAAGCCCCT 0.612 11 63 HIVEP2 3097 broad.mit.edu;ucsc.edu 37 6 143095693 143095693 + Silent SNP T T C TCGA-FG-8182-01A-11D-2253-08 TCGA-FG-8182-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx 2aeaab9f-4459-4be8-91e7-e0746cbd671c 705290ff-c3b5-4e53-956d-05fc3825ccb7 CAAACAGTTGTGCTGATGCTG 0.498 29 207 FLRT2 23768 broad.mit.edu;ucsc.edu 37 14 86089274 86089274 + Silent SNP C C T rs146568257 byFrequency TCGA-FG-8182-01A-11D-2253-08 TCGA-FG-8182-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx 2aeaab9f-4459-4be8-91e7-e0746cbd671c 705290ff-c3b5-4e53-956d-05fc3825ccb7 GCATAGTCAGCGGTGAGAAGC 0.517 45 96 MUC16 94025 broad.mit.edu;ucsc.edu 37 19 8987333 8987333 + Splice_Site SNP G G A TCGA-FG-8182-01A-11D-2253-08 TCGA-FG-8182-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx 2aeaab9f-4459-4be8-91e7-e0746cbd671c 705290ff-c3b5-4e53-956d-05fc3825ccb7 TGACCACCCCGGCTAGGGCAG 0.597 14 112 TNFRSF9 3604 broad.mit.edu;ucsc.edu 37 1 7998823 7998823 + Missense_Mutation SNP C C T rs9657963 byFrequency TCGA-FG-8182-01A-11D-2253-08 TCGA-FG-8182-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx 2aeaab9f-4459-4be8-91e7-e0746cbd671c 705290ff-c3b5-4e53-956d-05fc3825ccb7 TGTCCACCTGCGCTGGAGAAA 0.408 17 157 ADAMTS9 56999 broad.mit.edu;ucsc.edu 37 3 64526873 64526873 + Missense_Mutation SNP C C T TCGA-FG-8182-01A-11D-2253-08 TCGA-FG-8182-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx 2aeaab9f-4459-4be8-91e7-e0746cbd671c 705290ff-c3b5-4e53-956d-05fc3825ccb7 CGCCGGCTCCCGTTATAGGGA 0.473 23 120 ATRX 546 broad.mit.edu;hgsc.bcm.edu 37 X 76890105 76890106 + Frame_Shift_Ins INS - - CATA TCGA-FG-8182-01A-11D-2253-08 TCGA-FG-8182-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx 2aeaab9f-4459-4be8-91e7-e0746cbd671c 705290ff-c3b5-4e53-956d-05fc3825ccb7 TTACCAAGGCCCATACAGTGGG 0.371 16 61 TCF12 6938 broad.mit.edu 37 15 57565437 57565438 + Frame_Shift_Ins INS - - TTGAC TCGA-FG-8182-01A-11D-2253-08 TCGA-FG-8182-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx 2aeaab9f-4459-4be8-91e7-e0746cbd671c 705290ff-c3b5-4e53-956d-05fc3825ccb7 GCAGTCATCCTTAGTCTAGAAC 0.441 9 51 ATRX 546 broad.mit.edu 37 X 76938654 76938655 + Frame_Shift_Ins INS - - T TCGA-FG-8182-01A-11D-2253-08 TCGA-FG-8182-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx 2aeaab9f-4459-4be8-91e7-e0746cbd671c 705290ff-c3b5-4e53-956d-05fc3825ccb7 TACGCTTATCCTTTTTTCTCAC 0.356 9 64 ATRX 546 broad.mit.edu 37 X 76845302 76845302 + Splice_Site SNP A A G TCGA-FG-8182-01A-11D-2253-08 TCGA-FG-8182-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx 2aeaab9f-4459-4be8-91e7-e0746cbd671c 705290ff-c3b5-4e53-956d-05fc3825ccb7 TTTGTAGCTCACCTTTATAAA 0.328 3 8