Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_file Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID ref_context gc_content t_alt_count t_ref_count MUC2 4583 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 11 1102176 1102176 + Silent SNP C C T TCGA-FG-A4MU-01B-11D-A289-08 TCGA-FG-A4MU-10A-01D-A289-08 Untested Somatic Phase_I WXS none Illumina GAIIx 17bade4e-8b65-42e3-932f-d50716d0d833 fa64db97-5a09-43a5-8ef3-4671ca970e4b CCTGCACCCACGTGCCCTGCA 0.617 47 58 TOLLIP 54472 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 11 1298448 1298448 + Missense_Mutation SNP C C T TCGA-FG-A4MU-01B-11D-A289-08 TCGA-FG-A4MU-10A-01D-A289-08 Untested Somatic Phase_I WXS none Illumina GAIIx 17bade4e-8b65-42e3-932f-d50716d0d833 fa64db97-5a09-43a5-8ef3-4671ca970e4b GGCAGGGCCACGGGCACCATG 0.607 57 56 ZNF215 7762 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 11 6953559 6953559 + Missense_Mutation SNP G G A TCGA-FG-A4MU-01B-11D-A289-08 TCGA-FG-A4MU-10A-01D-A289-08 Untested Somatic Phase_I WXS none Illumina GAIIx 17bade4e-8b65-42e3-932f-d50716d0d833 fa64db97-5a09-43a5-8ef3-4671ca970e4b CTGTCTCTACGTGAACAAAGA 0.473 49 61 MRGPRX2 117194 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 11 19077575 19077575 + Silent SNP G G A TCGA-FG-A4MU-01B-11D-A289-08 TCGA-FG-A4MU-10A-01D-A289-08 Untested Somatic Phase_I WXS none Illumina GAIIx 17bade4e-8b65-42e3-932f-d50716d0d833 fa64db97-5a09-43a5-8ef3-4671ca970e4b GGCAGCGCTCGGTGCTGACGG 0.602 42 72 AMBRA1 55626 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 11 46419176 46419176 + Missense_Mutation SNP G G A TCGA-FG-A4MU-01B-11D-A289-08 TCGA-FG-A4MU-10A-01D-A289-08 Untested Somatic Phase_I WXS none Illumina GAIIx 17bade4e-8b65-42e3-932f-d50716d0d833 fa64db97-5a09-43a5-8ef3-4671ca970e4b GTTGGCTCCCGCCCAGGGGTA 0.672 32 45 OR5R1 219479 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 11 56185615 56185615 + Silent SNP A A G TCGA-FG-A4MU-01B-11D-A289-08 TCGA-FG-A4MU-10A-01D-A289-08 Untested Somatic Phase_I WXS none Illumina GAIIx 17bade4e-8b65-42e3-932f-d50716d0d833 fa64db97-5a09-43a5-8ef3-4671ca970e4b TAGATAACTAAAAACACCCCA 0.418 55 69 HEPHL1 341208 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 11 93796832 93796832 + Missense_Mutation SNP G G A TCGA-FG-A4MU-01B-11D-A289-08 TCGA-FG-A4MU-10A-01D-A289-08 Untested Somatic Phase_I WXS none Illumina GAIIx 17bade4e-8b65-42e3-932f-d50716d0d833 fa64db97-5a09-43a5-8ef3-4671ca970e4b GCACATCGACGCCCCAAAGGA 0.522 65 84 ADAMTS15 170689 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 11 130340895 130340895 + Missense_Mutation SNP G G A TCGA-FG-A4MU-01B-11D-A289-08 TCGA-FG-A4MU-10A-01D-A289-08 Untested Somatic Phase_I WXS none Illumina GAIIx 17bade4e-8b65-42e3-932f-d50716d0d833 fa64db97-5a09-43a5-8ef3-4671ca970e4b CACTCTCGCCGTGGCATGGGT 0.597 97 129 CD163 9332 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 12 7635288 7635288 + Silent SNP G G A TCGA-FG-A4MU-01B-11D-A289-08 TCGA-FG-A4MU-10A-01D-A289-08 Untested Somatic Phase_I WXS none Illumina GAIIx 17bade4e-8b65-42e3-932f-d50716d0d833 fa64db97-5a09-43a5-8ef3-4671ca970e4b AGAATAATGCGACGAAAATGG 0.423 61 77 TRPV4 59341 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 12 110234444 110234444 + Silent SNP G G A TCGA-FG-A4MU-01B-11D-A289-08 TCGA-FG-A4MU-10A-01D-A289-08 Untested Somatic Phase_I WXS none Illumina GAIIx 17bade4e-8b65-42e3-932f-d50716d0d833 fa64db97-5a09-43a5-8ef3-4671ca970e4b CCCAGTCCTTGAACTTGCGGG 0.607 39 59 HECTD1 25831 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 14 31576337 31576337 + Silent SNP G G A TCGA-FG-A4MU-01B-11D-A289-08 TCGA-FG-A4MU-10A-01D-A289-08 Untested Somatic Phase_I WXS none Illumina GAIIx 17bade4e-8b65-42e3-932f-d50716d0d833 fa64db97-5a09-43a5-8ef3-4671ca970e4b AAATTCCAAGGAAATGAAACA 0.378 51 66 L2HGDH 79944 hgsc.bcm.edu;broad.mit.edu 37 14 50735882 50735882 + Splice_Site SNP G G A rs118204020 TCGA-FG-A4MU-01B-11D-A289-08 TCGA-FG-A4MU-10A-01D-A289-08 Untested Somatic Phase_I WXS none Illumina GAIIx 17bade4e-8b65-42e3-932f-d50716d0d833 fa64db97-5a09-43a5-8ef3-4671ca970e4b ATTACCTACCGGATAAATATT 0.388 32 46 CCDC88C 440193 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 14 91770249 91770249 + Missense_Mutation SNP G G A TCGA-FG-A4MU-01B-11D-A289-08 TCGA-FG-A4MU-10A-01D-A289-08 Untested Somatic Phase_I WXS none Illumina GAIIx 17bade4e-8b65-42e3-932f-d50716d0d833 fa64db97-5a09-43a5-8ef3-4671ca970e4b CTCCTTGGCCGTGTGGTGGTT 0.657 56 75 IREB2 3658 hgsc.bcm.edu;broad.mit.edu 37 15 78730692 78730692 + Missense_Mutation SNP A A G TCGA-FG-A4MU-01B-11D-A289-08 TCGA-FG-A4MU-10A-01D-A289-08 Untested Somatic Phase_I WXS none Illumina GAIIx 17bade4e-8b65-42e3-932f-d50716d0d833 fa64db97-5a09-43a5-8ef3-4671ca970e4b GGACGCCCCAAAAGCAGGTCA 0.662 7 9 AGBL1 123624 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 15 86940603 86940603 + Missense_Mutation SNP G G A TCGA-FG-A4MU-01B-11D-A289-08 TCGA-FG-A4MU-10A-01D-A289-08 Untested Somatic Phase_I WXS none Illumina GAIIx 17bade4e-8b65-42e3-932f-d50716d0d833 fa64db97-5a09-43a5-8ef3-4671ca970e4b GCAGGACATCGTCCATATCAG 0.403 18 30 SRRM2 23524 hgsc.bcm.edu;broad.mit.edu 37 16 2820396 2820396 + Silent SNP C C A TCGA-FG-A4MU-01B-11D-A289-08 TCGA-FG-A4MU-10A-01D-A289-08 Untested Somatic Phase_I WXS none Illumina GAIIx 17bade4e-8b65-42e3-932f-d50716d0d833 fa64db97-5a09-43a5-8ef3-4671ca970e4b CAGGGACTCTCGGTCCCTCAG 0.647 15 15 C16orf45 0 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 16 15609218 15609218 + Missense_Mutation SNP C C A TCGA-FG-A4MU-01B-11D-A289-08 TCGA-FG-A4MU-10A-01D-A289-08 Untested Somatic Phase_I WXS none Illumina GAIIx 17bade4e-8b65-42e3-932f-d50716d0d833 fa64db97-5a09-43a5-8ef3-4671ca970e4b GGAGATTGAGCTGGAGATGGC 0.532 24 38 OR3A2 4995 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 17 3181586 3181586 + Missense_Mutation SNP A A G TCGA-FG-A4MU-01B-11D-A289-08 TCGA-FG-A4MU-10A-01D-A289-08 Untested Somatic Phase_I WXS none Illumina GAIIx 17bade4e-8b65-42e3-932f-d50716d0d833 fa64db97-5a09-43a5-8ef3-4671ca970e4b TGTGCCTGCCATGATGAAACC 0.547 40 63 MYH13 8735 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 17 10267760 10267760 + Missense_Mutation SNP G G A TCGA-FG-A4MU-01B-11D-A289-08 TCGA-FG-A4MU-10A-01D-A289-08 Untested Somatic Phase_I WXS none Illumina GAIIx 17bade4e-8b65-42e3-932f-d50716d0d833 fa64db97-5a09-43a5-8ef3-4671ca970e4b TCGAATGGACGATTTTGAGCC 0.463 9 8 FHOD3 80206 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 18 34298551 34298551 + Missense_Mutation SNP A A G TCGA-FG-A4MU-01B-11D-A289-08 TCGA-FG-A4MU-10A-01D-A289-08 Untested Somatic Phase_I WXS none Illumina GAIIx 17bade4e-8b65-42e3-932f-d50716d0d833 fa64db97-5a09-43a5-8ef3-4671ca970e4b CGGCCTTTTGACTGGCCATGT 0.502 79 112 CD209 30835 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 19 7812221 7812221 + Missense_Mutation SNP C C T TCGA-FG-A4MU-01B-11D-A289-08 TCGA-FG-A4MU-10A-01D-A289-08 Untested Somatic Phase_I WXS none Illumina GAIIx 17bade4e-8b65-42e3-932f-d50716d0d833 fa64db97-5a09-43a5-8ef3-4671ca970e4b TCGAGTCTGTCGGAATCCAAG 0.572 259 670 ZNF763 284390 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 19 12089769 12089769 + Missense_Mutation SNP G G A TCGA-FG-A4MU-01B-11D-A289-08 TCGA-FG-A4MU-10A-01D-A289-08 Untested Somatic Phase_I WXS none Illumina GAIIx 17bade4e-8b65-42e3-932f-d50716d0d833 fa64db97-5a09-43a5-8ef3-4671ca970e4b TCAATGTAAGGAATGTAGAAA 0.413 61 128 C19orf43 0 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 19 12841862 12841862 + Silent SNP G G A rs116718949 byFrequency TCGA-FG-A4MU-01B-11D-A289-08 TCGA-FG-A4MU-10A-01D-A289-08 Untested Somatic Phase_I WXS none Illumina GAIIx 17bade4e-8b65-42e3-932f-d50716d0d833 fa64db97-5a09-43a5-8ef3-4671ca970e4b TGGCCCACGCGTCACCTTTAC 0.557 45 99 TECR 9524 hgsc.bcm.edu;ucsc.edu 37 19 14674491 14674491 + Missense_Mutation SNP G G A TCGA-FG-A4MU-01B-11D-A289-08 TCGA-FG-A4MU-10A-01D-A289-08 Untested Somatic Phase_I WXS none Illumina GAIIx 17bade4e-8b65-42e3-932f-d50716d0d833 fa64db97-5a09-43a5-8ef3-4671ca970e4b TACCCCGCCCGCCAGTCCCTC 0.706 52 102 SLC1A6 6511 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 19 15063753 15063753 + Missense_Mutation SNP C C T TCGA-FG-A4MU-01B-11D-A289-08 TCGA-FG-A4MU-10A-01D-A289-08 Untested Somatic Phase_I WXS none Illumina GAIIx 17bade4e-8b65-42e3-932f-d50716d0d833 fa64db97-5a09-43a5-8ef3-4671ca970e4b AACCAGTCCACGGCAATGATG 0.582 78 140 RYR1 6261 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 19 38942436 38942436 + Silent SNP C C T rs144658230 TCGA-FG-A4MU-01B-11D-A289-08 TCGA-FG-A4MU-10A-01D-A289-08 Untested Somatic Phase_I WXS none Illumina GAIIx 17bade4e-8b65-42e3-932f-d50716d0d833 fa64db97-5a09-43a5-8ef3-4671ca970e4b ACATGGACGACGCACTGTCGC 0.632 47 119 RSPH6A 81492 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 19 46313896 46313896 + Missense_Mutation SNP C C T TCGA-FG-A4MU-01B-11D-A289-08 TCGA-FG-A4MU-10A-01D-A289-08 Untested Somatic Phase_I WXS none Illumina GAIIx 17bade4e-8b65-42e3-932f-d50716d0d833 fa64db97-5a09-43a5-8ef3-4671ca970e4b CCTTCAGTGCCGCCTCCACTC 0.627 125 331 LILRA4 23547 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 19 54849686 54849686 + Silent SNP G G A TCGA-FG-A4MU-01B-11D-A289-08 TCGA-FG-A4MU-10A-01D-A289-08 Untested Somatic Phase_I WXS none Illumina GAIIx 17bade4e-8b65-42e3-932f-d50716d0d833 fa64db97-5a09-43a5-8ef3-4671ca970e4b CCAGCTCCAGGGGGTCGCTGG 0.617 33 85 SPAG17 200162 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 1 118516183 118516183 + Splice_Site SNP T T C TCGA-FG-A4MU-01B-11D-A289-08 TCGA-FG-A4MU-10A-01D-A289-08 Untested Somatic Phase_I WXS none Illumina GAIIx 17bade4e-8b65-42e3-932f-d50716d0d833 fa64db97-5a09-43a5-8ef3-4671ca970e4b AAGATTCTGCTTCTGTTAGAG 0.378 50 55 RUSC1 23623 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 1 155296536 155296536 + Missense_Mutation SNP C C T TCGA-FG-A4MU-01B-11D-A289-08 TCGA-FG-A4MU-10A-01D-A289-08 Untested Somatic Phase_I WXS none Illumina GAIIx 17bade4e-8b65-42e3-932f-d50716d0d833 fa64db97-5a09-43a5-8ef3-4671ca970e4b CTGGGCCCACCTCAGGCCCCT 0.657 80 114 SUCO 51430 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 1 172579290 172579290 + Missense_Mutation SNP T T G TCGA-FG-A4MU-01B-11D-A289-08 TCGA-FG-A4MU-10A-01D-A289-08 Untested Somatic Phase_I WXS none Illumina GAIIx 17bade4e-8b65-42e3-932f-d50716d0d833 fa64db97-5a09-43a5-8ef3-4671ca970e4b ATAAAAACTCTAATACAGACT 0.418 20 32 PCNXL2 80003 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 1 233150466 233150466 + Silent SNP G G A TCGA-FG-A4MU-01B-11D-A289-08 TCGA-FG-A4MU-10A-01D-A289-08 Untested Somatic Phase_I WXS none Illumina GAIIx 17bade4e-8b65-42e3-932f-d50716d0d833 fa64db97-5a09-43a5-8ef3-4671ca970e4b AGGGTGCACAGGGCGAAGGAC 0.542 37 77 OR2T34 127068 hgsc.bcm.edu;broad.mit.edu 37 1 248737288 248737288 + Silent SNP G G A TCGA-FG-A4MU-01B-11D-A289-08 TCGA-FG-A4MU-10A-01D-A289-08 Untested Somatic Phase_I WXS none Illumina GAIIx 17bade4e-8b65-42e3-932f-d50716d0d833 fa64db97-5a09-43a5-8ef3-4671ca970e4b AGGAAGCACCGAAGAGCAGCA 0.557 43 59 TMPRSS15 5651 hgsc.bcm.edu;broad.mit.edu 37 21 19716359 19716359 + Missense_Mutation SNP G G T TCGA-FG-A4MU-01B-11D-A289-08 TCGA-FG-A4MU-10A-01D-A289-08 Untested Somatic Phase_I WXS none Illumina GAIIx 17bade4e-8b65-42e3-932f-d50716d0d833 fa64db97-5a09-43a5-8ef3-4671ca970e4b TGGTCCAGTTGGGGTAGAAAT 0.398 76 75 SLC5A4 6527 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 22 32643471 32643471 + Missense_Mutation SNP C C T TCGA-FG-A4MU-01B-11D-A289-08 TCGA-FG-A4MU-10A-01D-A289-08 Untested Somatic Phase_I WXS none Illumina GAIIx 17bade4e-8b65-42e3-932f-d50716d0d833 fa64db97-5a09-43a5-8ef3-4671ca970e4b CCCACCAAACCGCTTCTTGAG 0.488 23 39 MICALL1 85377 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 22 38329071 38329071 + Missense_Mutation SNP C C T TCGA-FG-A4MU-01B-11D-A289-08 TCGA-FG-A4MU-10A-01D-A289-08 Untested Somatic Phase_I WXS none Illumina GAIIx 17bade4e-8b65-42e3-932f-d50716d0d833 fa64db97-5a09-43a5-8ef3-4671ca970e4b CCTGGAGCAGCGCCAGGCTGA 0.612 41 76 TPO 7173 hgsc.bcm.edu;ucsc.edu 37 2 1457595 1457595 + Splice_Site SNP G G A rs3732349 by1000genomes TCGA-FG-A4MU-01B-11D-A289-08 TCGA-FG-A4MU-10A-01D-A289-08 Untested Somatic Phase_I WXS none Illumina GAIIx 17bade4e-8b65-42e3-932f-d50716d0d833 fa64db97-5a09-43a5-8ef3-4671ca970e4b CACTGCCCCCGGTGGGTACTC 0.592 33 28 VRK2 7444 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 2 58358955 58358955 + Missense_Mutation SNP G G A TCGA-FG-A4MU-01B-11D-A289-08 TCGA-FG-A4MU-10A-01D-A289-08 Untested Somatic Phase_I WXS none Illumina GAIIx 17bade4e-8b65-42e3-932f-d50716d0d833 fa64db97-5a09-43a5-8ef3-4671ca970e4b TTGTCCAGACGAAGTGACGTT 0.478 38 46 RANBP2 5903 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 2 109400287 109400287 + Missense_Mutation SNP T T C TCGA-FG-A4MU-01B-11D-A289-08 TCGA-FG-A4MU-10A-01D-A289-08 Untested Somatic Phase_I WXS none Illumina GAIIx 17bade4e-8b65-42e3-932f-d50716d0d833 fa64db97-5a09-43a5-8ef3-4671ca970e4b GTGAAAAAGATTGAATCATTT 0.328 29 41 DPP10 57628 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 2 116525951 116525951 + Missense_Mutation SNP T T A TCGA-FG-A4MU-01B-11D-A289-08 TCGA-FG-A4MU-10A-01D-A289-08 Untested Somatic Phase_I WXS none Illumina GAIIx 17bade4e-8b65-42e3-932f-d50716d0d833 fa64db97-5a09-43a5-8ef3-4671ca970e4b ACGTGGAGAATTTCACCACGT 0.463 26 37 CERKL 375298 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 2 182468728 182468728 + Missense_Mutation SNP C C T TCGA-FG-A4MU-01B-11D-A289-08 TCGA-FG-A4MU-10A-01D-A289-08 Untested Somatic Phase_I WXS none Illumina GAIIx 17bade4e-8b65-42e3-932f-d50716d0d833 fa64db97-5a09-43a5-8ef3-4671ca970e4b AACAGAACAACGCCGTTTCAG 0.313 9 19 CCDC108 255101 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 2 219893020 219893020 + Missense_Mutation SNP C C T rs147414922 TCGA-FG-A4MU-01B-11D-A289-08 TCGA-FG-A4MU-10A-01D-A289-08 Untested Somatic Phase_I WXS none Illumina GAIIx 17bade4e-8b65-42e3-932f-d50716d0d833 fa64db97-5a09-43a5-8ef3-4671ca970e4b CGTCAGGCCCCGGGCCAGGTG 0.617 65 81 ASIC4 55515 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 2 220379714 220379714 + Missense_Mutation SNP C C T TCGA-FG-A4MU-01B-11D-A289-08 TCGA-FG-A4MU-10A-01D-A289-08 Untested Somatic Phase_I WXS none Illumina GAIIx 17bade4e-8b65-42e3-932f-d50716d0d833 fa64db97-5a09-43a5-8ef3-4671ca970e4b TGGCCTGGCCCGGGGCTACCT 0.701 23 30 SP100 6672 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 2 231331885 231331885 + Missense_Mutation SNP G G A rs144727058 TCGA-FG-A4MU-01B-11D-A289-08 TCGA-FG-A4MU-10A-01D-A289-08 Untested Somatic Phase_I WXS none Illumina GAIIx 17bade4e-8b65-42e3-932f-d50716d0d833 fa64db97-5a09-43a5-8ef3-4671ca970e4b GGAGGCGCCCGCAGAAGCCTC 0.527 97 122 UGT1A7 54577 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 2 234590757 234590757 + Silent SNP C C T TCGA-FG-A4MU-01B-11D-A289-08 TCGA-FG-A4MU-10A-01D-A289-08 Untested Somatic Phase_I WXS none Illumina GAIIx 17bade4e-8b65-42e3-932f-d50716d0d833 fa64db97-5a09-43a5-8ef3-4671ca970e4b TGGTCGTAGTCATGCCAGAGG 0.547 76 87 LRRIQ4 344657 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 3 169540471 169540471 + Silent SNP C C T TCGA-FG-A4MU-01B-11D-A289-08 TCGA-FG-A4MU-10A-01D-A289-08 Untested Somatic Phase_I WXS none Illumina GAIIx 17bade4e-8b65-42e3-932f-d50716d0d833 fa64db97-5a09-43a5-8ef3-4671ca970e4b AGAGCTTCGCCGAGCTCAGGA 0.602 21 36 FAM43A 131583 hgsc.bcm.edu;broad.mit.edu 37 3 194408803 194408803 + Silent SNP T T C TCGA-FG-A4MU-01B-11D-A289-08 TCGA-FG-A4MU-10A-01D-A289-08 Untested Somatic Phase_I WXS none Illumina GAIIx 17bade4e-8b65-42e3-932f-d50716d0d833 fa64db97-5a09-43a5-8ef3-4671ca970e4b ACGGCGCCAGTGCAGACGAGC 0.751 7 7 ZNF732 654254 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 4 265912 265912 + Missense_Mutation SNP G G A TCGA-FG-A4MU-01B-11D-A289-08 TCGA-FG-A4MU-10A-01D-A289-08 Untested Somatic Phase_I WXS none Illumina GAIIx 17bade4e-8b65-42e3-932f-d50716d0d833 fa64db97-5a09-43a5-8ef3-4671ca970e4b TTTCTCTCCAGTATGAACTTT 0.368 6 18 VCAN 1462 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 5 82816827 82816827 + Missense_Mutation SNP C C T TCGA-FG-A4MU-01B-11D-A289-08 TCGA-FG-A4MU-10A-01D-A289-08 Untested Somatic Phase_I WXS none Illumina GAIIx 17bade4e-8b65-42e3-932f-d50716d0d833 fa64db97-5a09-43a5-8ef3-4671ca970e4b AGAGATTCTACAACTGAAGAA 0.408 67 65 FGD2 221472 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 6 36979617 36979617 + Missense_Mutation SNP C C T TCGA-FG-A4MU-01B-11D-A289-08 TCGA-FG-A4MU-10A-01D-A289-08 Untested Somatic Phase_I WXS none Illumina GAIIx 17bade4e-8b65-42e3-932f-d50716d0d833 fa64db97-5a09-43a5-8ef3-4671ca970e4b GCTGCAGCGGCGCCTGGACGA 0.617 28 35 COL9A1 1297 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 6 70972973 70972973 + Missense_Mutation SNP C C T rs148011193 TCGA-FG-A4MU-01B-11D-A289-08 TCGA-FG-A4MU-10A-01D-A289-08 Untested Somatic Phase_I WXS none Illumina GAIIx 17bade4e-8b65-42e3-932f-d50716d0d833 fa64db97-5a09-43a5-8ef3-4671ca970e4b CCAACTTCTCCGAGTTCTCCC 0.323 7 17 SMAP1 60682 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 6 71501425 71501425 + Missense_Mutation SNP G G T TCGA-FG-A4MU-01B-11D-A289-08 TCGA-FG-A4MU-10A-01D-A289-08 Untested Somatic Phase_I WXS none Illumina GAIIx 17bade4e-8b65-42e3-932f-d50716d0d833 fa64db97-5a09-43a5-8ef3-4671ca970e4b TCAGCCTTTGGTATCCTCTCC 0.393 55 70 KIAA1244 57221 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 6 138575103 138575103 + Missense_Mutation SNP G G A TCGA-FG-A4MU-01B-11D-A289-08 TCGA-FG-A4MU-10A-01D-A289-08 Untested Somatic Phase_I WXS none Illumina GAIIx 17bade4e-8b65-42e3-932f-d50716d0d833 fa64db97-5a09-43a5-8ef3-4671ca970e4b CTGCACAGGCGCTTCACGGAC 0.612 6 10 HOXA6 3203 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 7 27187208 27187208 + Nonsense_Mutation SNP G G T TCGA-FG-A4MU-01B-11D-A289-08 TCGA-FG-A4MU-10A-01D-A289-08 Untested Somatic Phase_I WXS none Illumina GAIIx 17bade4e-8b65-42e3-932f-d50716d0d833 fa64db97-5a09-43a5-8ef3-4671ca970e4b GAAACAAGGTGAGGTGTACGT 0.612 37 106 EGFR 1956 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 7 55233043 55233043 + Missense_Mutation SNP G G T rs139236063 TCGA-FG-A4MU-01B-11D-A289-08 TCGA-FG-A4MU-10A-01D-A289-08 Untested Somatic Phase_I WXS none Illumina GAIIx 17bade4e-8b65-42e3-932f-d50716d0d833 fa64db97-5a09-43a5-8ef3-4671ca970e4b TGCCCGGCAGGAGTCATGGGA 0.567 5339 231 PCLO 27445 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 7 82582077 82582077 + Missense_Mutation SNP C C T TCGA-FG-A4MU-01B-11D-A289-08 TCGA-FG-A4MU-10A-01D-A289-08 Untested Somatic Phase_I WXS none Illumina GAIIx 17bade4e-8b65-42e3-932f-d50716d0d833 fa64db97-5a09-43a5-8ef3-4671ca970e4b TGGTACTGTACGCAAATCAAT 0.353 9 21 TECPR1 25851 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 7 97874267 97874267 + Missense_Mutation SNP G G C TCGA-FG-A4MU-01B-11D-A289-08 TCGA-FG-A4MU-10A-01D-A289-08 Untested Somatic Phase_I WXS none Illumina GAIIx 17bade4e-8b65-42e3-932f-d50716d0d833 fa64db97-5a09-43a5-8ef3-4671ca970e4b CCAGTGCGGCGAGGGCAGTGC 0.617 10 51 GAL3ST4 79690 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 7 99758141 99758141 + Missense_Mutation SNP G G T TCGA-FG-A4MU-01B-11D-A289-08 TCGA-FG-A4MU-10A-01D-A289-08 Untested Somatic Phase_I WXS none Illumina GAIIx 17bade4e-8b65-42e3-932f-d50716d0d833 fa64db97-5a09-43a5-8ef3-4671ca970e4b AGCCATGCCAGACCCCACTGG 0.527 67 177 SOX17 64321 hgsc.bcm.edu;broad.mit.edu 37 8 55370802 55370802 + Nonsense_Mutation SNP C C A TCGA-FG-A4MU-01B-11D-A289-08 TCGA-FG-A4MU-10A-01D-A289-08 Untested Somatic Phase_I WXS none Illumina GAIIx 17bade4e-8b65-42e3-932f-d50716d0d833 fa64db97-5a09-43a5-8ef3-4671ca970e4b TGGGCCGAGTCGCTGAGCCCC 0.741 9 14 SOX17 64321 hgsc.bcm.edu;broad.mit.edu 37 8 55370804 55370804 + Silent SNP C C T TCGA-FG-A4MU-01B-11D-A289-08 TCGA-FG-A4MU-10A-01D-A289-08 Untested Somatic Phase_I WXS none Illumina GAIIx 17bade4e-8b65-42e3-932f-d50716d0d833 fa64db97-5a09-43a5-8ef3-4671ca970e4b GGCCGAGTCGCTGAGCCCCAT 0.746 9 17 RP1 6101 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 8 55538939 55538939 + Missense_Mutation SNP T T A TCGA-FG-A4MU-01B-11D-A289-08 TCGA-FG-A4MU-10A-01D-A289-08 Untested Somatic Phase_I WXS none Illumina GAIIx 17bade4e-8b65-42e3-932f-d50716d0d833 fa64db97-5a09-43a5-8ef3-4671ca970e4b ACCCAAAGATTTTTATGCACC 0.323 14 22 PLEC 5339 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 8 144995970 144995970 + Silent SNP C C T TCGA-FG-A4MU-01B-11D-A289-08 TCGA-FG-A4MU-10A-01D-A289-08 Untested Somatic Phase_I WXS none Illumina GAIIx 17bade4e-8b65-42e3-932f-d50716d0d833 fa64db97-5a09-43a5-8ef3-4671ca970e4b TGTGGCCCTGCGCCAACCGCT 0.682 46 40 PRRC2B 84726 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 9 134353210 134353210 + Missense_Mutation SNP G G A TCGA-FG-A4MU-01B-11D-A289-08 TCGA-FG-A4MU-10A-01D-A289-08 Untested Somatic Phase_I WXS none Illumina GAIIx 17bade4e-8b65-42e3-932f-d50716d0d833 fa64db97-5a09-43a5-8ef3-4671ca970e4b CCTGGAGCGGGCAGCCCATGC 0.607 19 11 TEX13A 56157 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 X 104464686 104464686 + Silent SNP G G T TCGA-FG-A4MU-01B-11D-A289-08 TCGA-FG-A4MU-10A-01D-A289-08 Untested Somatic Phase_I WXS none Illumina GAIIx 17bade4e-8b65-42e3-932f-d50716d0d833 fa64db97-5a09-43a5-8ef3-4671ca970e4b GGCTGGTCTGGGCCATTCTTA 0.592 21 0 PLXNA3 55558 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 X 153693430 153693430 + Missense_Mutation SNP C C T TCGA-FG-A4MU-01B-11D-A289-08 TCGA-FG-A4MU-10A-01D-A289-08 Untested Somatic Phase_I WXS none Illumina GAIIx 17bade4e-8b65-42e3-932f-d50716d0d833 fa64db97-5a09-43a5-8ef3-4671ca970e4b TCTTACCTTGCGGGCTAAGAA 0.647 28 0 COL5A1 1289 broad.mit.edu;ucsc.edu 37 9 137701113 137701113 + Missense_Mutation SNP C C A TCGA-FG-A4MU-01B-11D-A289-08 TCGA-FG-A4MU-10A-01D-A289-08 Untested Somatic Phase_I WXS none Illumina GAIIx 17bade4e-8b65-42e3-932f-d50716d0d833 fa64db97-5a09-43a5-8ef3-4671ca970e4b CCCTGTGGGTCCCCCTGGAGA 0.632 4 8 COL22A1 169044 broad.mit.edu;ucsc.edu 37 8 139890331 139890331 + Missense_Mutation SNP C C T TCGA-FG-A4MU-01B-11D-A289-08 TCGA-FG-A4MU-10A-01D-A289-08 Untested Somatic Phase_I WXS none Illumina GAIIx 17bade4e-8b65-42e3-932f-d50716d0d833 fa64db97-5a09-43a5-8ef3-4671ca970e4b GTAGGCGAGACGCCGGGCAGC 0.721 6 6 GRM4 2914 broad.mit.edu;ucsc.edu 37 6 34004320 34004320 + Missense_Mutation SNP G G A TCGA-FG-A4MU-01B-11D-A289-08 TCGA-FG-A4MU-10A-01D-A289-08 Untested Somatic Phase_I WXS none Illumina GAIIx 17bade4e-8b65-42e3-932f-d50716d0d833 fa64db97-5a09-43a5-8ef3-4671ca970e4b GGTTGGCAGGGCAGGCTGCAG 0.632 36 41 C9 735 broad.mit.edu;ucsc.edu 37 5 39364519 39364519 + Silent SNP T T A TCGA-FG-A4MU-01B-11D-A289-08 TCGA-FG-A4MU-10A-01D-A289-08 Untested Somatic Phase_I WXS none Illumina GAIIx 17bade4e-8b65-42e3-932f-d50716d0d833 fa64db97-5a09-43a5-8ef3-4671ca970e4b TGAGGATGCTTATTTCTAAAA 0.512 7 18 OR2T3 343173 broad.mit.edu;ucsc.edu 37 1 248637422 248637422 + Silent SNP C C T TCGA-FG-A4MU-01B-11D-A289-08 TCGA-FG-A4MU-10A-01D-A289-08 Untested Somatic Phase_I WXS none Illumina GAIIx 17bade4e-8b65-42e3-932f-d50716d0d833 fa64db97-5a09-43a5-8ef3-4671ca970e4b TGCTGCTCTTCGGTGCTTCCT 0.552 41 318 GPR98 84059 broad.mit.edu;ucsc.edu 37 5 89933730 89933730 + Silent SNP G G A TCGA-FG-A4MU-01B-11D-A289-08 TCGA-FG-A4MU-10A-01D-A289-08 Untested Somatic Phase_I WXS none Illumina GAIIx 17bade4e-8b65-42e3-932f-d50716d0d833 fa64db97-5a09-43a5-8ef3-4671ca970e4b ATGACATACCGGAAATGAATG 0.353 23 35 FBN2 2201 broad.mit.edu;ucsc.edu 37 5 127800539 127800539 + Missense_Mutation SNP G G A TCGA-FG-A4MU-01B-11D-A289-08 TCGA-FG-A4MU-10A-01D-A289-08 Untested Somatic Phase_I WXS none Illumina GAIIx 17bade4e-8b65-42e3-932f-d50716d0d833 fa64db97-5a09-43a5-8ef3-4671ca970e4b CAGAGTCTTCGTGCAGACAAT 0.577 39 60 CSNK1A1P1 161635 broad.mit.edu;ucsc.edu 37 15 37109983 37109983 + RNA SNP G G A TCGA-FG-A4MU-01B-11D-A289-08 TCGA-FG-A4MU-10A-01D-A289-08 Untested Somatic Phase_I WXS none Illumina GAIIx 17bade4e-8b65-42e3-932f-d50716d0d833 fa64db97-5a09-43a5-8ef3-4671ca970e4b CAATTCTACTGATCATCTGGT 0.383 10 20 RELN 5649 broad.mit.edu;ucsc.edu 37 7 103163890 103163890 + Missense_Mutation SNP C C T rs150236371 byFrequency TCGA-FG-A4MU-01B-11D-A289-08 TCGA-FG-A4MU-10A-01D-A289-08 Untested Somatic Phase_I WXS none Illumina GAIIx 17bade4e-8b65-42e3-932f-d50716d0d833 fa64db97-5a09-43a5-8ef3-4671ca970e4b TCTATGCAGCCATCCCCGATA 0.473 63 154 SUSD3 203328 broad.mit.edu;hgsc.bcm.edu 37 9 95838087 95838087 + Frame_Shift_Del DEL T T - TCGA-FG-A4MU-01B-11D-A289-08 TCGA-FG-A4MU-10A-01D-A289-08 Untested Somatic Phase_I WXS none Illumina GAIIx 17bade4e-8b65-42e3-932f-d50716d0d833 fa64db97-5a09-43a5-8ef3-4671ca970e4b AAGCTGCGGCTACCCCCGCAA 0.677 23 53 KLHDC1 122773 broad.mit.edu;hgsc.bcm.edu 37 14 50206884 50206885 + Frame_Shift_Ins INS - - A TCGA-FG-A4MU-01B-11D-A289-08 TCGA-FG-A4MU-10A-01D-A289-08 Untested Somatic Phase_I WXS none Illumina GAIIx 17bade4e-8b65-42e3-932f-d50716d0d833 fa64db97-5a09-43a5-8ef3-4671ca970e4b AAAGATGACTTACTTGCCTTGG 0.332 18 23 SDK2 54549 broad.mit.edu;hgsc.bcm.edu 37 17 71344740 71344741 + Frame_Shift_Del DEL GA GA - TCGA-FG-A4MU-01B-11D-A289-08 TCGA-FG-A4MU-10A-01D-A289-08 Untested Somatic Phase_I WXS none Illumina GAIIx 17bade4e-8b65-42e3-932f-d50716d0d833 fa64db97-5a09-43a5-8ef3-4671ca970e4b GCCCTCACCTGAGAGTCGGAGA 0.594 12 22