Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_file Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID ref_context gc_content t_alt_count t_ref_count MYO3A 53904 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 10 26500833 26500833 + Missense_Mutation SNP G G A TCGA-HT-7471-01A-11D-2253-08 TCGA-HT-7471-10B-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx 06425414-a57c-40df-905e-290fa2086153 d0b349eb-d50b-43ec-903d-e8494d8705ca CAACCCCTACGACTTCAGGAG 0.652 6 15 CHST15 51363 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 10 125780796 125780796 + Missense_Mutation SNP G G C TCGA-HT-7471-01A-11D-2253-08 TCGA-HT-7471-10B-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx 06425414-a57c-40df-905e-290fa2086153 d0b349eb-d50b-43ec-903d-e8494d8705ca TGAGGGTGTTGTTGTAGACGC 0.542 10 13 CHRNA3 1136 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 15 78894483 78894483 + Silent SNP C C T TCGA-HT-7471-01A-11D-2253-08 TCGA-HT-7471-10B-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx 06425414-a57c-40df-905e-290fa2086153 d0b349eb-d50b-43ec-903d-e8494d8705ca GGTAATCAAACGGGAAGTAGG 0.483 34 177 TMC8 147138 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 17 76130033 76130033 + Silent SNP G G A TCGA-HT-7471-01A-11D-2253-08 TCGA-HT-7471-10B-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx 06425414-a57c-40df-905e-290fa2086153 d0b349eb-d50b-43ec-903d-e8494d8705ca GCATCCGGGTGCAGGAAGCAG 0.577 36 44 GATA6 2627 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 18 19751533 19751533 + Missense_Mutation SNP A A G TCGA-HT-7471-01A-11D-2253-08 TCGA-HT-7471-10B-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx 06425414-a57c-40df-905e-290fa2086153 d0b349eb-d50b-43ec-903d-e8494d8705ca GCACCCGAGCAGCCGGAGGAG 0.716 6 40 COLGALT1 79709 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 19 17690296 17690296 + Silent SNP G G A TCGA-HT-7471-01A-11D-2253-08 TCGA-HT-7471-10B-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx 06425414-a57c-40df-905e-290fa2086153 d0b349eb-d50b-43ec-903d-e8494d8705ca CTCAGGTGGTGGACCGGGGGC 0.562 29 45 ZNF761 388561 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 19 53959188 53959188 + RNA SNP G G A rs144532705 TCGA-HT-7471-01A-11D-2253-08 TCGA-HT-7471-10B-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx 06425414-a57c-40df-905e-290fa2086153 d0b349eb-d50b-43ec-903d-e8494d8705ca AAAGCTTTCCGTTTCAAATCA 0.423 36 3 FUBP1 8880 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 1 78430773 78430773 + Nonsense_Mutation SNP C C A TCGA-HT-7471-01A-11D-2253-08 TCGA-HT-7471-10B-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx 06425414-a57c-40df-905e-290fa2086153 d0b349eb-d50b-43ec-903d-e8494d8705ca TTAATAGTTTCTCCCCCTTTT 0.393 128 39 KIAA1324 57535 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 1 109707134 109707134 + Silent SNP C C T rs144842352 TCGA-HT-7471-01A-11D-2253-08 TCGA-HT-7471-10B-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx 06425414-a57c-40df-905e-290fa2086153 d0b349eb-d50b-43ec-903d-e8494d8705ca TCTCCTGCAACGCCGGGGAGT 0.592 103 21 ADCY10 55811 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 1 167870912 167870912 + Nonsense_Mutation SNP G G A TCGA-HT-7471-01A-11D-2253-08 TCGA-HT-7471-10B-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx 06425414-a57c-40df-905e-290fa2086153 d0b349eb-d50b-43ec-903d-e8494d8705ca ATCTTGACTCGGATGTCTAGG 0.463 87 102 CACNA1E 777 hgsc.bcm.edu;broad.mit.edu 37 1 181765891 181765891 + Missense_Mutation SNP G G A TCGA-HT-7471-01A-11D-2253-08 TCGA-HT-7471-10B-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx 06425414-a57c-40df-905e-290fa2086153 d0b349eb-d50b-43ec-903d-e8494d8705ca GATGTCTCCCGCTGCAATTCA 0.602 3 18 SON 6651 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 21 34924118 34924118 + Missense_Mutation SNP A A G rs142324795 TCGA-HT-7471-01A-11D-2253-08 TCGA-HT-7471-10B-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx 06425414-a57c-40df-905e-290fa2086153 d0b349eb-d50b-43ec-903d-e8494d8705ca AACTAGCTCAATGGATTCCCA 0.493 102 140 LRRC3 81543 hgsc.bcm.edu;broad.mit.edu 37 21 45876870 45876870 + Silent SNP C C T rs138458454 TCGA-HT-7471-01A-11D-2253-08 TCGA-HT-7471-10B-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx 06425414-a57c-40df-905e-290fa2086153 d0b349eb-d50b-43ec-903d-e8494d8705ca GGCCGGGGGCCTGCGGCTGCT 0.672 4 59 IDH1 3417 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 2 209113112 209113112 + Missense_Mutation SNP C C T rs121913500 TCGA-HT-7471-01A-11D-2253-08 TCGA-HT-7471-10B-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx 06425414-a57c-40df-905e-290fa2086153 d0b349eb-d50b-43ec-903d-e8494d8705ca ATAAGCATGACGACCTATGAT 0.393 55 70 STAB1 23166 hgsc.bcm.edu;broad.mit.edu 37 3 52552602 52552602 + Silent SNP C C T TCGA-HT-7471-01A-11D-2253-08 TCGA-HT-7471-10B-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx 06425414-a57c-40df-905e-290fa2086153 d0b349eb-d50b-43ec-903d-e8494d8705ca TCGTGCCGCACGCAGATCTAA 0.627 5 8 SLC6A3 6531 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 5 1409836 1409836 + Splice_Site SNP G G A rs2270912 byFrequency TCGA-HT-7471-01A-11D-2253-08 TCGA-HT-7471-10B-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx 06425414-a57c-40df-905e-290fa2086153 d0b349eb-d50b-43ec-903d-e8494d8705ca TGGTACGTACGTTGGTGACGC 0.617 45 51 TTYH3 80727 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 7 2698612 2698612 + Missense_Mutation SNP A A G TCGA-HT-7471-01A-11D-2253-08 TCGA-HT-7471-10B-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx 06425414-a57c-40df-905e-290fa2086153 d0b349eb-d50b-43ec-903d-e8494d8705ca CGCTGTGAGAACACCCCACTC 0.642 124 165 TMEM248 55069 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 7 66416082 66416082 + Missense_Mutation SNP A A G TCGA-HT-7471-01A-11D-2253-08 TCGA-HT-7471-10B-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx 06425414-a57c-40df-905e-290fa2086153 d0b349eb-d50b-43ec-903d-e8494d8705ca GGAAAAGTCTATCATGCTTTA 0.428 38 65 MXRA5 25878 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 X 3238337 3238337 + Missense_Mutation SNP C C T TCGA-HT-7471-01A-11D-2253-08 TCGA-HT-7471-10B-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx 06425414-a57c-40df-905e-290fa2086153 d0b349eb-d50b-43ec-903d-e8494d8705ca GAGGGTGATCCCGTGGTCTGC 0.493 20 27 CCNT1 904 broad.mit.edu;ucsc.edu 37 12 49087565 49087565 + Nonsense_Mutation SNP C C A TCGA-HT-7471-01A-11D-2253-08 TCGA-HT-7471-10B-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx 06425414-a57c-40df-905e-290fa2086153 d0b349eb-d50b-43ec-903d-e8494d8705ca TTTATCTCCTCTGGTTTTGAA 0.453 36 66 RBM4 5936 broad.mit.edu;hgsc.bcm.edu 37 11 66411034 66411035 + Frame_Shift_Ins INS - - CGATAGAT TCGA-HT-7471-01A-11D-2253-08 TCGA-HT-7471-10B-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx 06425414-a57c-40df-905e-290fa2086153 d0b349eb-d50b-43ec-903d-e8494d8705ca CAAAGAGTGTCCGATAGATCGT 0.579 14 80 CIC 23152 broad.mit.edu;hgsc.bcm.edu 37 19 42794411 42794411 + Frame_Shift_Del DEL T T - TCGA-HT-7471-01A-11D-2253-08 TCGA-HT-7471-10B-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx 06425414-a57c-40df-905e-290fa2086153 d0b349eb-d50b-43ec-903d-e8494d8705ca TGTTTTCACCTGTGATCCGTT 0.617 82 26