Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_file Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID ref_context gc_content t_alt_count t_ref_count KIAA1377 57562 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 11 101857730 101857730 + Missense_Mutation SNP A A G TCGA-HT-7476-01A-11D-2024-08 TCGA-HT-7476-10A-01D-2024-08 Untested Somatic Phase_I WXS none Illumina GAIIx c9627781-e55f-45ac-9c49-bdd3b0bcdc86 6dff219a-04da-4385-bcdb-17871c41e822 TGAAGAACAGAAGATCCTAGA 0.328 26 45 LRFN5 145581 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 14 42356999 42356999 + Missense_Mutation SNP G G C TCGA-HT-7476-01A-11D-2024-08 TCGA-HT-7476-10A-01D-2024-08 Untested Somatic Phase_I WXS none Illumina GAIIx c9627781-e55f-45ac-9c49-bdd3b0bcdc86 6dff219a-04da-4385-bcdb-17871c41e822 CCATGAGCCTGATCCTGGTTC 0.388 12 63 IDH2 3418 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 15 90631838 90631838 + Missense_Mutation SNP C C T rs121913503 TCGA-HT-7476-01A-11D-2024-08 TCGA-HT-7476-10A-01D-2024-08 Untested Somatic Phase_I WXS none Illumina GAIIx c9627781-e55f-45ac-9c49-bdd3b0bcdc86 6dff219a-04da-4385-bcdb-17871c41e822 ATGGGCGTGCCTGCCAATGGT 0.632 28 43 UNC45A 55898 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 15 91491977 91491977 + Missense_Mutation SNP G G C TCGA-HT-7476-01A-11D-2024-08 TCGA-HT-7476-10A-01D-2024-08 Untested Somatic Phase_I WXS none Illumina GAIIx c9627781-e55f-45ac-9c49-bdd3b0bcdc86 6dff219a-04da-4385-bcdb-17871c41e822 CAAGATGGTGGAGCTGGCCAA 0.627 4 11 TP53 7157 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 17 7577121 7577121 + Missense_Mutation SNP G G A rs121913343 TCGA-HT-7476-01A-11D-2024-08 TCGA-HT-7476-10A-01D-2024-08 Untested Somatic Phase_I WXS none Illumina GAIIx c9627781-e55f-45ac-9c49-bdd3b0bcdc86 6dff219a-04da-4385-bcdb-17871c41e822 GCACAAACACGCACCTCAAAG 0.542 16 10 FLRT3 23767 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 20 14307457 14307457 + Silent SNP C C T TCGA-HT-7476-01A-11D-2024-08 TCGA-HT-7476-10A-01D-2024-08 Untested Somatic Phase_I WXS none Illumina GAIIx c9627781-e55f-45ac-9c49-bdd3b0bcdc86 6dff219a-04da-4385-bcdb-17871c41e822 AATTCCGCACCAGGGACAGCT 0.453 18 49 TPTE 7179 hgsc.bcm.edu;broad.mit.edu 37 21 10973723 10973723 + Splice_Site SNP C C G TCGA-HT-7476-01A-11D-2024-08 TCGA-HT-7476-10A-01D-2024-08 Untested Somatic Phase_I WXS none Illumina GAIIx c9627781-e55f-45ac-9c49-bdd3b0bcdc86 6dff219a-04da-4385-bcdb-17871c41e822 CATAACTCACCTTTCATTCAT 0.383 15 95 ITIH4 3700 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 3 52848085 52848085 + Nonsense_Mutation SNP G G A TCGA-HT-7476-01A-11D-2024-08 TCGA-HT-7476-10A-01D-2024-08 Untested Somatic Phase_I WXS none Illumina GAIIx c9627781-e55f-45ac-9c49-bdd3b0bcdc86 6dff219a-04da-4385-bcdb-17871c41e822 TGGTAAAACTGGCCTGAGATA 0.592 10 18 SPICE1 152185 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 3 113172505 113172505 + Silent SNP C C G TCGA-HT-7476-01A-11D-2024-08 TCGA-HT-7476-10A-01D-2024-08 Untested Somatic Phase_I WXS none Illumina GAIIx c9627781-e55f-45ac-9c49-bdd3b0bcdc86 6dff219a-04da-4385-bcdb-17871c41e822 GCCCATCTCCCAGTACTGGGA 0.453 30 74 KIAA1211 57482 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 4 57193877 57193877 + Silent SNP G G A TCGA-HT-7476-01A-11D-2024-08 TCGA-HT-7476-10A-01D-2024-08 Untested Somatic Phase_I WXS none Illumina GAIIx c9627781-e55f-45ac-9c49-bdd3b0bcdc86 6dff219a-04da-4385-bcdb-17871c41e822 TTTCCACCCCGGATGCTGCCC 0.507 60 125 TRPC3 7222 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 4 122853715 122853715 + Missense_Mutation SNP T T A TCGA-HT-7476-01A-11D-2024-08 TCGA-HT-7476-10A-01D-2024-08 Untested Somatic Phase_I WXS none Illumina GAIIx c9627781-e55f-45ac-9c49-bdd3b0bcdc86 6dff219a-04da-4385-bcdb-17871c41e822 GGGGGTGATGTCCGGCGAGAA 0.617 22 35 FAT4 79633 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 4 126239920 126239920 + Missense_Mutation SNP A A G TCGA-HT-7476-01A-11D-2024-08 TCGA-HT-7476-10A-01D-2024-08 Untested Somatic Phase_I WXS none Illumina GAIIx c9627781-e55f-45ac-9c49-bdd3b0bcdc86 6dff219a-04da-4385-bcdb-17871c41e822 ACTGTATTGGACACTCAAGAC 0.448 14 116 AP3B1 8546 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 5 77473214 77473214 + Missense_Mutation SNP G G C TCGA-HT-7476-01A-11D-2024-08 TCGA-HT-7476-10A-01D-2024-08 Untested Somatic Phase_I WXS none Illumina GAIIx c9627781-e55f-45ac-9c49-bdd3b0bcdc86 6dff219a-04da-4385-bcdb-17871c41e822 GCCAGCTTCAGATTTTGGTGA 0.338 28 57 DYNC1I1 1780 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 7 95657551 95657551 + Missense_Mutation SNP C C T TCGA-HT-7476-01A-11D-2024-08 TCGA-HT-7476-10A-01D-2024-08 Untested Somatic Phase_I WXS none Illumina GAIIx c9627781-e55f-45ac-9c49-bdd3b0bcdc86 6dff219a-04da-4385-bcdb-17871c41e822 GGGACTTACTCGGGCCAGATT 0.532 49 95 SPAM1 6677 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 7 123594310 123594310 + Missense_Mutation SNP A A T TCGA-HT-7476-01A-11D-2024-08 TCGA-HT-7476-10A-01D-2024-08 Untested Somatic Phase_I WXS none Illumina GAIIx c9627781-e55f-45ac-9c49-bdd3b0bcdc86 6dff219a-04da-4385-bcdb-17871c41e822 AACCATCACTATAAGAAACCC 0.388 37 81 MUSK 4593 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 9 113547910 113547910 + Missense_Mutation SNP A A G TCGA-HT-7476-01A-11D-2024-08 TCGA-HT-7476-10A-01D-2024-08 Untested Somatic Phase_I WXS none Illumina GAIIx c9627781-e55f-45ac-9c49-bdd3b0bcdc86 6dff219a-04da-4385-bcdb-17871c41e822 TCTGAACCCCAAATTGCTCAG 0.483 66 122 PCDH19 57526 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 X 99662028 99662028 + Missense_Mutation SNP T T C TCGA-HT-7476-01A-11D-2024-08 TCGA-HT-7476-10A-01D-2024-08 Untested Somatic Phase_I WXS none Illumina GAIIx c9627781-e55f-45ac-9c49-bdd3b0bcdc86 6dff219a-04da-4385-bcdb-17871c41e822 GGTCTGCTCGTGGTTAAAGGA 0.582 42 31 ATRX 546 broad.mit.edu;hgsc.bcm.edu 37 X 76939347 76939348 + Frame_Shift_Del DEL TT TT - TCGA-HT-7476-01A-11D-2024-08 TCGA-HT-7476-10A-01D-2024-08 Untested Somatic Phase_I WXS none Illumina GAIIx c9627781-e55f-45ac-9c49-bdd3b0bcdc86 6dff219a-04da-4385-bcdb-17871c41e822 TATCTACCTGTTTTCTTGAAAG 0.356 103 67