Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_file Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID ref_context gc_content t_alt_count t_ref_count TP53 7157 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 17 7578413 7578413 + Missense_Mutation SNP C C T TCGA-HT-7479-01A-11D-2024-08 TCGA-HT-7479-10A-01D-2024-08 Untested Somatic Phase_I WXS none Illumina GAIIx d45da2a7-4b4f-4194-80c1-2b26ceb2f769 bc1d4a60-ad52-4534-9e2f-b5a5208c66a1 CAGCGCCTCACAACCTCCGTC 0.662 32 28 KRT38 8687 hgsc.bcm.edu;broad.mit.edu 37 17 39596991 39596991 + Silent SNP G G A TCGA-HT-7479-01A-11D-2024-08 TCGA-HT-7479-10A-01D-2024-08 Untested Somatic Phase_I WXS none Illumina GAIIx d45da2a7-4b4f-4194-80c1-2b26ceb2f769 bc1d4a60-ad52-4534-9e2f-b5a5208c66a1 GGCGGCCCAGGGGAGTGGACC 0.637 6 82 TTYH2 94015 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 17 72233513 72233513 + Silent SNP C C T TCGA-HT-7479-01A-11D-2024-08 TCGA-HT-7479-10A-01D-2024-08 Untested Somatic Phase_I WXS none Illumina GAIIx d45da2a7-4b4f-4194-80c1-2b26ceb2f769 bc1d4a60-ad52-4534-9e2f-b5a5208c66a1 CTGCCCGGGGCGATTACCTGC 0.597 19 63 OTOP2 92736 hgsc.bcm.edu;broad.mit.edu 37 17 72923807 72923807 + Missense_Mutation SNP C C A TCGA-HT-7479-01A-11D-2024-08 TCGA-HT-7479-10A-01D-2024-08 Untested Somatic Phase_I WXS none Illumina GAIIx d45da2a7-4b4f-4194-80c1-2b26ceb2f769 bc1d4a60-ad52-4534-9e2f-b5a5208c66a1 ATCTGGATGGCGGCCGTGGTG 0.577 4 45 PLVAP 83483 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 19 17487967 17487967 + Missense_Mutation SNP A A G TCGA-HT-7479-01A-11D-2024-08 TCGA-HT-7479-10A-01D-2024-08 Untested Somatic Phase_I WXS none Illumina GAIIx d45da2a7-4b4f-4194-80c1-2b26ceb2f769 bc1d4a60-ad52-4534-9e2f-b5a5208c66a1 CATGAAGAGCACGAGCCCCAG 0.612 19 54 PLCH2 9651 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 1 2415924 2415924 + Missense_Mutation SNP T T G TCGA-HT-7479-01A-11D-2024-08 TCGA-HT-7479-10A-01D-2024-08 Untested Somatic Phase_I WXS none Illumina GAIIx d45da2a7-4b4f-4194-80c1-2b26ceb2f769 bc1d4a60-ad52-4534-9e2f-b5a5208c66a1 ACGCTGGGTTTTGAAGAGTTC 0.602 8 29 ZFP69 339559 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 1 40961691 40961691 + Missense_Mutation SNP A A G TCGA-HT-7479-01A-11D-2024-08 TCGA-HT-7479-10A-01D-2024-08 Untested Somatic Phase_I WXS none Illumina GAIIx d45da2a7-4b4f-4194-80c1-2b26ceb2f769 bc1d4a60-ad52-4534-9e2f-b5a5208c66a1 AGTCGACATCATGAAATACAC 0.368 24 81 OR6K2 81448 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 1 158670418 158670418 + Missense_Mutation SNP T T C TCGA-HT-7479-01A-11D-2024-08 TCGA-HT-7479-10A-01D-2024-08 Untested Somatic Phase_I WXS none Illumina GAIIx d45da2a7-4b4f-4194-80c1-2b26ceb2f769 bc1d4a60-ad52-4534-9e2f-b5a5208c66a1 AACTCCTGAATGGTGGTTCGA 0.433 15 73 ASPHD2 57168 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 22 26829961 26829961 + Missense_Mutation SNP A A G TCGA-HT-7479-01A-11D-2024-08 TCGA-HT-7479-10A-01D-2024-08 Untested Somatic Phase_I WXS none Illumina GAIIx d45da2a7-4b4f-4194-80c1-2b26ceb2f769 bc1d4a60-ad52-4534-9e2f-b5a5208c66a1 CAGAAGCTGTACCACAACCTG 0.652 12 40 MYT1L 23040 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 2 1906994 1906994 + Silent SNP C C T TCGA-HT-7479-01A-11D-2024-08 TCGA-HT-7479-10A-01D-2024-08 Untested Somatic Phase_I WXS none Illumina GAIIx d45da2a7-4b4f-4194-80c1-2b26ceb2f769 bc1d4a60-ad52-4534-9e2f-b5a5208c66a1 GGTTGGAACGCGGCGTAGTTG 0.468 12 31 MOGS 7841 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 2 74688527 74688527 + Missense_Mutation SNP G G A TCGA-HT-7479-01A-11D-2024-08 TCGA-HT-7479-10A-01D-2024-08 Untested Somatic Phase_I WXS none Illumina GAIIx d45da2a7-4b4f-4194-80c1-2b26ceb2f769 bc1d4a60-ad52-4534-9e2f-b5a5208c66a1 TGGTACTGGCGCCATACATTG 0.622 27 79 AMER3 205147 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 2 131521009 131521009 + Missense_Mutation SNP C C T TCGA-HT-7479-01A-11D-2024-08 TCGA-HT-7479-10A-01D-2024-08 Untested Somatic Phase_I WXS none Illumina GAIIx d45da2a7-4b4f-4194-80c1-2b26ceb2f769 bc1d4a60-ad52-4534-9e2f-b5a5208c66a1 GCCCTGGGGACGCCACTGTCC 0.652 21 52 IDH1 3417 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 2 209113113 209113113 + Missense_Mutation SNP G G A rs121913499 TCGA-HT-7479-01A-11D-2024-08 TCGA-HT-7479-10A-01D-2024-08 Untested Somatic Phase_I WXS none Illumina GAIIx d45da2a7-4b4f-4194-80c1-2b26ceb2f769 bc1d4a60-ad52-4534-9e2f-b5a5208c66a1 TAAGCATGACGACCTATGATG 0.398 21 65 CASR 846 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 3 122003874 122003874 + Missense_Mutation SNP C C A TCGA-HT-7479-01A-11D-2024-08 TCGA-HT-7479-10A-01D-2024-08 Untested Somatic Phase_I WXS none Illumina GAIIx d45da2a7-4b4f-4194-80c1-2b26ceb2f769 bc1d4a60-ad52-4534-9e2f-b5a5208c66a1 GGACTTAGATCTGACCGTCCA 0.592 22 61 FRAS1 80144 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 4 79428637 79428637 + Missense_Mutation SNP T T C TCGA-HT-7479-01A-11D-2024-08 TCGA-HT-7479-10A-01D-2024-08 Untested Somatic Phase_I WXS none Illumina GAIIx d45da2a7-4b4f-4194-80c1-2b26ceb2f769 bc1d4a60-ad52-4534-9e2f-b5a5208c66a1 ATGGCATGAATCTTTCTCACT 0.488 5 34 PCDHGB3 56102 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 5 140750527 140750527 + Missense_Mutation SNP G G T TCGA-HT-7479-01A-11D-2024-08 TCGA-HT-7479-10A-01D-2024-08 Untested Somatic Phase_I WXS none Illumina GAIIx d45da2a7-4b4f-4194-80c1-2b26ceb2f769 bc1d4a60-ad52-4534-9e2f-b5a5208c66a1 CTGGATGGCAGTAGGTACCCA 0.557 34 134 ZNF300 91975 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 5 150275093 150275093 + Missense_Mutation SNP T T A TCGA-HT-7479-01A-11D-2024-08 TCGA-HT-7479-10A-01D-2024-08 Untested Somatic Phase_I WXS none Illumina GAIIx d45da2a7-4b4f-4194-80c1-2b26ceb2f769 bc1d4a60-ad52-4534-9e2f-b5a5208c66a1 CCAGTATGAATCCTCTGATGT 0.438 22 60 FAM47A 158724 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 X 34149060 34149060 + Missense_Mutation SNP C C G TCGA-HT-7479-01A-11D-2024-08 TCGA-HT-7479-10A-01D-2024-08 Untested Somatic Phase_I WXS none Illumina GAIIx d45da2a7-4b4f-4194-80c1-2b26ceb2f769 bc1d4a60-ad52-4534-9e2f-b5a5208c66a1 ACCCGGGCCTCACAACGATCC 0.557 17 20 SNHG14 104472715 broad.mit.edu;ucsc.edu 37 15 25438440 25438440 + RNA SNP A A G TCGA-HT-7479-01A-11D-2024-08 TCGA-HT-7479-10A-01D-2024-08 Untested Somatic Phase_I WXS none Illumina GAIIx d45da2a7-4b4f-4194-80c1-2b26ceb2f769 bc1d4a60-ad52-4534-9e2f-b5a5208c66a1 TGCTGGATGCATGCGCCGGGA 0.537 50 182 BTN2A3P 54718 broad.mit.edu;ucsc.edu 37 6 26423175 26423175 + RNA SNP G G A rs151279164 byFrequency TCGA-HT-7479-01A-11D-2024-08 TCGA-HT-7479-10A-01D-2024-08 Untested Somatic Phase_I WXS none Illumina GAIIx d45da2a7-4b4f-4194-80c1-2b26ceb2f769 bc1d4a60-ad52-4534-9e2f-b5a5208c66a1 GGTCACTGTCGTGGGGCCCAC 0.537 16 42 OCA2 4948 broad.mit.edu;hgsc.bcm.edu 37 15 28171297 28171297 + Frame_Shift_Del DEL A A - TCGA-HT-7479-01A-11D-2024-08 TCGA-HT-7479-10A-01D-2024-08 Untested Somatic Phase_I WXS none Illumina GAIIx d45da2a7-4b4f-4194-80c1-2b26ceb2f769 bc1d4a60-ad52-4534-9e2f-b5a5208c66a1 AGAGCGCTGCAAAAAACAGAA 0.363 19 63 ZNF320 162967 broad.mit.edu;hgsc.bcm.edu 37 19 53384195 53384195 + Frame_Shift_Del DEL C C - TCGA-HT-7479-01A-11D-2024-08 TCGA-HT-7479-10A-01D-2024-08 Untested Somatic Phase_I WXS none Illumina GAIIx d45da2a7-4b4f-4194-80c1-2b26ceb2f769 bc1d4a60-ad52-4534-9e2f-b5a5208c66a1 CGCTTTTGTACTAAAAACCTT 0.403 38 104