Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_file Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID ref_context gc_content t_alt_count t_ref_count CD163 9332 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 12 7635248 7635248 + Missense_Mutation SNP G G A TCGA-HT-7481-01A-11D-2024-08 TCGA-HT-7481-10A-01D-2024-08 Untested Somatic Phase_I WXS none Illumina GAIIx 932ab1b0-9a7d-4906-8474-21a1809dc45c 42f07474-90cb-4b0a-aed3-08e7ff9f7b49 CCTGCAAGCCGCTGTCTCTGT 0.428 55 124 KERA 11081 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 12 91449544 91449544 + Missense_Mutation SNP T T C TCGA-HT-7481-01A-11D-2024-08 TCGA-HT-7481-10A-01D-2024-08 Untested Somatic Phase_I WXS none Illumina GAIIx 932ab1b0-9a7d-4906-8474-21a1809dc45c 42f07474-90cb-4b0a-aed3-08e7ff9f7b49 GTTCTGTAGGTCAAGAAGGGT 0.413 49 160 FSCB 84075 hgsc.bcm.edu;broad.mit.edu 37 14 44975038 44975038 + Silent SNP G G T TCGA-HT-7481-01A-11D-2024-08 TCGA-HT-7481-10A-01D-2024-08 Untested Somatic Phase_I WXS none Illumina GAIIx 932ab1b0-9a7d-4906-8474-21a1809dc45c 42f07474-90cb-4b0a-aed3-08e7ff9f7b49 GAGGGAGACCGAATTTCACCA 0.532 12 144 NETO1 81832 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 18 70417415 70417415 + Missense_Mutation SNP T T C TCGA-HT-7481-01A-11D-2024-08 TCGA-HT-7481-10A-01D-2024-08 Untested Somatic Phase_I WXS none Illumina GAIIx 932ab1b0-9a7d-4906-8474-21a1809dc45c 42f07474-90cb-4b0a-aed3-08e7ff9f7b49 ATGACAAGGATATTTCTTCTG 0.507 13 49 NLRP2 55655 hgsc.bcm.edu;broad.mit.edu 37 19 55494669 55494669 + Missense_Mutation SNP G G A TCGA-HT-7481-01A-11D-2024-08 TCGA-HT-7481-10A-01D-2024-08 Untested Somatic Phase_I WXS none Illumina GAIIx 932ab1b0-9a7d-4906-8474-21a1809dc45c 42f07474-90cb-4b0a-aed3-08e7ff9f7b49 CATTGGGGACGTACAGAAGCT 0.557 4 51 FUBP1 8880 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 1 78420962 78420962 + Nonsense_Mutation SNP C C T TCGA-HT-7481-01A-11D-2024-08 TCGA-HT-7481-10A-01D-2024-08 Untested Somatic Phase_I WXS none Illumina GAIIx 932ab1b0-9a7d-4906-8474-21a1809dc45c 42f07474-90cb-4b0a-aed3-08e7ff9f7b49 AGTACTCTTCCCAAGCCTTGG 0.318 11 24 HRNR 388697 hgsc.bcm.edu;broad.mit.edu 37 1 152191242 152191242 + Missense_Mutation SNP A A G TCGA-HT-7481-01A-11D-2024-08 TCGA-HT-7481-10A-01D-2024-08 Untested Somatic Phase_I WXS none Illumina GAIIx 932ab1b0-9a7d-4906-8474-21a1809dc45c 42f07474-90cb-4b0a-aed3-08e7ff9f7b49 TCGTAGCTGGAGGAGTGACCT 0.542 96 319 FLRT3 23767 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 20 14306271 14306271 + Missense_Mutation SNP T T C TCGA-HT-7481-01A-11D-2024-08 TCGA-HT-7481-10A-01D-2024-08 Untested Somatic Phase_I WXS none Illumina GAIIx 932ab1b0-9a7d-4906-8474-21a1809dc45c 42f07474-90cb-4b0a-aed3-08e7ff9f7b49 CTGCTTTCACTGTGATTGTTT 0.413 18 141 TSHZ2 128553 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 20 51873020 51873020 + Missense_Mutation SNP C C T TCGA-HT-7481-01A-11D-2024-08 TCGA-HT-7481-10A-01D-2024-08 Untested Somatic Phase_I WXS none Illumina GAIIx 932ab1b0-9a7d-4906-8474-21a1809dc45c 42f07474-90cb-4b0a-aed3-08e7ff9f7b49 AGCAAACATGCGGTAAAACTC 0.468 19 59 DNMT3A 1788 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 2 25470985 25470985 + Missense_Mutation SNP G G C TCGA-HT-7481-01A-11D-2024-08 TCGA-HT-7481-10A-01D-2024-08 Untested Somatic Phase_I WXS none Illumina GAIIx 932ab1b0-9a7d-4906-8474-21a1809dc45c 42f07474-90cb-4b0a-aed3-08e7ff9f7b49 AGGCGTGGTAGCCACAGTGGG 0.647 24 55 IDH1 3417 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 2 209113112 209113112 + Missense_Mutation SNP C C T rs121913500 TCGA-HT-7481-01A-11D-2024-08 TCGA-HT-7481-10A-01D-2024-08 Untested Somatic Phase_I WXS none Illumina GAIIx 932ab1b0-9a7d-4906-8474-21a1809dc45c 42f07474-90cb-4b0a-aed3-08e7ff9f7b49 ATAAGCATGACGACCTATGAT 0.393 16 77 PIK3CA 5290 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 3 178917478 178917478 + Splice_Site SNP G G A TCGA-HT-7481-01A-11D-2024-08 TCGA-HT-7481-10A-01D-2024-08 Untested Somatic Phase_I WXS none Illumina GAIIx 932ab1b0-9a7d-4906-8474-21a1809dc45c 42f07474-90cb-4b0a-aed3-08e7ff9f7b49 TTTATTAAAGGTTTTGCTATC 0.338 14 82 PIK3CA 5290 hgsc.bcm.edu;broad.mit.edu 37 3 178952072 178952072 + Missense_Mutation SNP A A G TCGA-HT-7481-01A-11D-2024-08 TCGA-HT-7481-10A-01D-2024-08 Untested Somatic Phase_I WXS none Illumina GAIIx 932ab1b0-9a7d-4906-8474-21a1809dc45c 42f07474-90cb-4b0a-aed3-08e7ff9f7b49 CATGAAACAAATGAATGATGC 0.368 7 101 LMLN 89782 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 3 197751579 197751579 + Missense_Mutation SNP C C G TCGA-HT-7481-01A-11D-2024-08 TCGA-HT-7481-10A-01D-2024-08 Untested Somatic Phase_I WXS none Illumina GAIIx 932ab1b0-9a7d-4906-8474-21a1809dc45c 42f07474-90cb-4b0a-aed3-08e7ff9f7b49 TTCCGTTTGTCTAATTCAGAA 0.393 12 96 CPEB2 132864 hgsc.bcm.edu;broad.mit.edu 37 4 15060817 15060817 + Missense_Mutation SNP A A T TCGA-HT-7481-01A-11D-2024-08 TCGA-HT-7481-10A-01D-2024-08 Untested Somatic Phase_I WXS none Illumina GAIIx 932ab1b0-9a7d-4906-8474-21a1809dc45c 42f07474-90cb-4b0a-aed3-08e7ff9f7b49 ATAGGTTCAAATACGTCCTTG 0.348 5 63 UGT2B28 54490 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 4 70155435 70155435 + Missense_Mutation SNP G G A TCGA-HT-7481-01A-11D-2024-08 TCGA-HT-7481-10A-01D-2024-08 Untested Somatic Phase_I WXS none Illumina GAIIx 932ab1b0-9a7d-4906-8474-21a1809dc45c 42f07474-90cb-4b0a-aed3-08e7ff9f7b49 CTCAATACTCGGCTGTATAAG 0.363 31 40 GK2 2712 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 4 80328636 80328636 + Missense_Mutation SNP T T C TCGA-HT-7481-01A-11D-2024-08 TCGA-HT-7481-10A-01D-2024-08 Untested Somatic Phase_I WXS none Illumina GAIIx 932ab1b0-9a7d-4906-8474-21a1809dc45c 42f07474-90cb-4b0a-aed3-08e7ff9f7b49 AATTAGGCCATAGATCTCAGA 0.423 37 100 NUP155 9631 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 5 37309323 37309323 + Missense_Mutation SNP T T C TCGA-HT-7481-01A-11D-2024-08 TCGA-HT-7481-10A-01D-2024-08 Untested Somatic Phase_I WXS none Illumina GAIIx 932ab1b0-9a7d-4906-8474-21a1809dc45c 42f07474-90cb-4b0a-aed3-08e7ff9f7b49 TCTTTCTTTTTCAGTCTTATT 0.343 9 24 KIF6 221458 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 6 39513390 39513390 + Missense_Mutation SNP C C T TCGA-HT-7481-01A-11D-2024-08 TCGA-HT-7481-10A-01D-2024-08 Untested Somatic Phase_I WXS none Illumina GAIIx 932ab1b0-9a7d-4906-8474-21a1809dc45c 42f07474-90cb-4b0a-aed3-08e7ff9f7b49 ATGAACTTTACGCATATCCGC 0.358 32 77 DLK2 65989 hgsc.bcm.edu;broad.mit.edu 37 6 43418774 43418774 + Missense_Mutation SNP G G A TCGA-HT-7481-01A-11D-2024-08 TCGA-HT-7481-10A-01D-2024-08 Untested Somatic Phase_I WXS none Illumina GAIIx 932ab1b0-9a7d-4906-8474-21a1809dc45c 42f07474-90cb-4b0a-aed3-08e7ff9f7b49 TGGCATGGGCGGCTGGCACAG 0.622 5 71 FRK 2444 hgsc.bcm.edu;broad.mit.edu 37 6 116265543 116265543 + Missense_Mutation SNP G G A TCGA-HT-7481-01A-11D-2024-08 TCGA-HT-7481-10A-01D-2024-08 Untested Somatic Phase_I WXS none Illumina GAIIx 932ab1b0-9a7d-4906-8474-21a1809dc45c 42f07474-90cb-4b0a-aed3-08e7ff9f7b49 AACCTGTGCCGCCATGTCTAC 0.418 4 67 MAP3K4 4216 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 6 161470895 161470895 + Missense_Mutation SNP G G C TCGA-HT-7481-01A-11D-2024-08 TCGA-HT-7481-10A-01D-2024-08 Untested Somatic Phase_I WXS none Illumina GAIIx 932ab1b0-9a7d-4906-8474-21a1809dc45c 42f07474-90cb-4b0a-aed3-08e7ff9f7b49 ACCATTTGTAGACAAAGCACT 0.423 13 100 RAB11FIP1 80223 hgsc.bcm.edu;broad.mit.edu 37 8 37734856 37734856 + Silent SNP G G A TCGA-HT-7481-01A-11D-2024-08 TCGA-HT-7481-10A-01D-2024-08 Untested Somatic Phase_I WXS none Illumina GAIIx 932ab1b0-9a7d-4906-8474-21a1809dc45c 42f07474-90cb-4b0a-aed3-08e7ff9f7b49 AAGGTGTCGTGCTAGGGATGA 0.448 13 173 WISP2 8839 broad.mit.edu;ucsc.edu 37 20 43348625 43348625 + Missense_Mutation SNP T T G TCGA-HT-7481-01A-11D-2024-08 TCGA-HT-7481-10A-01D-2024-08 Untested Somatic Phase_I WXS none Illumina GAIIx 932ab1b0-9a7d-4906-8474-21a1809dc45c 42f07474-90cb-4b0a-aed3-08e7ff9f7b49 GCTGGATGGCTGTGGCTGCTG 0.697 5 16 HIST1H2BF 8343 broad.mit.edu;hgsc.bcm.edu 37 6 26199854 26199856 + In_Frame_Del DEL AGA AGA - rs150784470 TCGA-HT-7481-01A-11D-2024-08 TCGA-HT-7481-10A-01D-2024-08 Untested Somatic Phase_I WXS none Illumina GAIIx 932ab1b0-9a7d-4906-8474-21a1809dc45c 42f07474-90cb-4b0a-aed3-08e7ff9f7b49 ACCAAGGCGCAGAAGAAGGATGG 0.522 61 131 BACH2 60468 broad.mit.edu;hgsc.bcm.edu 37 6 90660233 90660235 + In_Frame_Del DEL TCC TCC - TCGA-HT-7481-01A-11D-2024-08 TCGA-HT-7481-10A-01D-2024-08 Untested Somatic Phase_I WXS none Illumina GAIIx 932ab1b0-9a7d-4906-8474-21a1809dc45c 42f07474-90cb-4b0a-aed3-08e7ff9f7b49 CCCGCTCCCGTCCTCCGCGTAGG 0.616 19 63 NOTCH1 4851 broad.mit.edu 37 9 139413067 139413069 + In_Frame_Del DEL AGT AGT - TCGA-HT-7481-01A-11D-2024-08 TCGA-HT-7481-10A-01D-2024-08 Untested Somatic Phase_I WXS none Illumina GAIIx 932ab1b0-9a7d-4906-8474-21a1809dc45c 42f07474-90cb-4b0a-aed3-08e7ff9f7b49 GGACACTCGCAGTAGAAGGAGGC 0.655 7 29 PIK3CA 5290 broad.mit.edu 37 3 178928078 178928080 + In_Frame_Del DEL AGA AGA - TCGA-HT-7481-01A-11D-2024-08 TCGA-HT-7481-10A-01D-2024-08 Untested Somatic Phase_I WXS none Illumina GAIIx 932ab1b0-9a7d-4906-8474-21a1809dc45c 42f07474-90cb-4b0a-aed3-08e7ff9f7b49 CTCATGGATTAGAAGATTTGCTG 0.35 8 102 PIK3R1 5295 broad.mit.edu 37 5 67589147 67589149 + In_Frame_Del DEL AAA AAA - TCGA-HT-7481-01A-11D-2024-08 TCGA-HT-7481-10A-01D-2024-08 Untested Somatic Phase_I WXS none Illumina GAIIx 932ab1b0-9a7d-4906-8474-21a1809dc45c 42f07474-90cb-4b0a-aed3-08e7ff9f7b49 GGGAAATAACAAATTAATCAAAA 0.31 11 69