Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_file Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID ref_context gc_content t_alt_count t_ref_count CPSF7 79869 hgsc.bcm.edu;broad.mit.edu 37 11 61183777 61183777 + Silent SNP A A G TCGA-HT-7601-01A-11D-2086-08 TCGA-HT-7601-10A-01D-2086-08 Untested Somatic Phase_I WXS none Illumina GAIIx 61c1c39b-845d-4939-8f36-e74df0b879f4 1f027233-400d-4586-91d7-02f137b0a7d9 GAGGAGGAGGAGGGACCCCAA 0.617 5 71 PITPNM1 9600 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 11 67269773 67269773 + Silent SNP C C T TCGA-HT-7601-01A-11D-2086-08 TCGA-HT-7601-10A-01D-2086-08 Untested Somatic Phase_I WXS none Illumina GAIIx 61c1c39b-845d-4939-8f36-e74df0b879f4 1f027233-400d-4586-91d7-02f137b0a7d9 CCAGGATGCGCTGTCTCCTCT 0.612 27 64 HEPHL1 341208 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 11 93822035 93822035 + Missense_Mutation SNP T T C TCGA-HT-7601-01A-11D-2086-08 TCGA-HT-7601-10A-01D-2086-08 Untested Somatic Phase_I WXS none Illumina GAIIx 61c1c39b-845d-4939-8f36-e74df0b879f4 1f027233-400d-4586-91d7-02f137b0a7d9 TACGGGATGATAAGAACTTTT 0.517 27 77 GJB2 2706 hgsc.bcm.edu;broad.mit.edu 37 13 20763148 20763148 + Silent SNP G G A TCGA-HT-7601-01A-11D-2086-08 TCGA-HT-7601-10A-01D-2086-08 Untested Somatic Phase_I WXS none Illumina GAIIx 61c1c39b-845d-4939-8f36-e74df0b879f4 1f027233-400d-4586-91d7-02f137b0a7d9 TGAACACTGTGAAGACAGTCT 0.488 4 73 GJB2 2706 hgsc.bcm.edu;broad.mit.edu 37 13 20763400 20763400 + Missense_Mutation SNP G G C rs111033253 TCGA-HT-7601-01A-11D-2086-08 TCGA-HT-7601-10A-01D-2086-08 Untested Somatic Phase_I WXS none Illumina GAIIx 61c1c39b-845d-4939-8f36-e74df0b879f4 1f027233-400d-4586-91d7-02f137b0a7d9 TCTCCCCCTTGATGAACTTCC 0.547 4 81 IPO5 3843 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 13 98658457 98658457 + Missense_Mutation SNP A A G TCGA-HT-7601-01A-11D-2086-08 TCGA-HT-7601-10A-01D-2086-08 Untested Somatic Phase_I WXS none Illumina GAIIx 61c1c39b-845d-4939-8f36-e74df0b879f4 1f027233-400d-4586-91d7-02f137b0a7d9 GATACTGCAGAAGAAAAATTT 0.388 20 190 MCTP2 55784 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 15 94841633 94841633 + Missense_Mutation SNP C C T TCGA-HT-7601-01A-11D-2086-08 TCGA-HT-7601-10A-01D-2086-08 Untested Somatic Phase_I WXS none Illumina GAIIx 61c1c39b-845d-4939-8f36-e74df0b879f4 1f027233-400d-4586-91d7-02f137b0a7d9 CTTGGACCGCCGTCTCAGCCT 0.592 7 59 CPNE2 221184 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 16 57147304 57147304 + Silent SNP C C G TCGA-HT-7601-01A-11D-2086-08 TCGA-HT-7601-10A-01D-2086-08 Untested Somatic Phase_I WXS none Illumina GAIIx 61c1c39b-845d-4939-8f36-e74df0b879f4 1f027233-400d-4586-91d7-02f137b0a7d9 AGTTCGCGCTCTTTGACCAGG 0.582 9 60 TP53 7157 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 17 7577121 7577121 + Missense_Mutation SNP G G A rs121913343 TCGA-HT-7601-01A-11D-2086-08 TCGA-HT-7601-10A-01D-2086-08 Untested Somatic Phase_I WXS none Illumina GAIIx 61c1c39b-845d-4939-8f36-e74df0b879f4 1f027233-400d-4586-91d7-02f137b0a7d9 GCACAAACACGCACCTCAAAG 0.542 22 13 SLC6A4 6532 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 17 28545875 28545875 + Missense_Mutation SNP C C T TCGA-HT-7601-01A-11D-2086-08 TCGA-HT-7601-10A-01D-2086-08 Untested Somatic Phase_I WXS none Illumina GAIIx 61c1c39b-845d-4939-8f36-e74df0b879f4 1f027233-400d-4586-91d7-02f137b0a7d9 TGGTACTGTCCCAGTGCGAGC 0.507 69 162 PRKAR1A 5573 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 17 66525030 66525030 + Missense_Mutation SNP A A T TCGA-HT-7601-01A-11D-2086-08 TCGA-HT-7601-10A-01D-2086-08 Untested Somatic Phase_I WXS none Illumina GAIIx 61c1c39b-845d-4939-8f36-e74df0b879f4 1f027233-400d-4586-91d7-02f137b0a7d9 ACAAGTGGGAACGTCTTACGG 0.398 16 151 LLGL2 3993 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 17 73567818 73567818 + Silent SNP G G A TCGA-HT-7601-01A-11D-2086-08 TCGA-HT-7601-10A-01D-2086-08 Untested Somatic Phase_I WXS none Illumina GAIIx 61c1c39b-845d-4939-8f36-e74df0b879f4 1f027233-400d-4586-91d7-02f137b0a7d9 CCCTGCGTGTGCCTCCCGCCG 0.672 8 85 LIPE 3991 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 19 42930578 42930578 + Missense_Mutation SNP A A T TCGA-HT-7601-01A-11D-2086-08 TCGA-HT-7601-10A-01D-2086-08 Untested Somatic Phase_I WXS none Illumina GAIIx 61c1c39b-845d-4939-8f36-e74df0b879f4 1f027233-400d-4586-91d7-02f137b0a7d9 TCTGTGTCTGAAGATGATCCC 0.473 48 67 LIPE 3991 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 19 42930579 42930579 + Silent SNP A A T TCGA-HT-7601-01A-11D-2086-08 TCGA-HT-7601-10A-01D-2086-08 Untested Somatic Phase_I WXS none Illumina GAIIx 61c1c39b-845d-4939-8f36-e74df0b879f4 1f027233-400d-4586-91d7-02f137b0a7d9 CTGTGTCTGAAGATGATCCCA 0.473 48 66 IDH1 3417 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 2 209113112 209113112 + Missense_Mutation SNP C C T rs121913500 TCGA-HT-7601-01A-11D-2086-08 TCGA-HT-7601-10A-01D-2086-08 Untested Somatic Phase_I WXS none Illumina GAIIx 61c1c39b-845d-4939-8f36-e74df0b879f4 1f027233-400d-4586-91d7-02f137b0a7d9 ATAAGCATGACGACCTATGAT 0.393 40 116 PLD1 5337 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 3 171427368 171427368 + Missense_Mutation SNP T T C TCGA-HT-7601-01A-11D-2086-08 TCGA-HT-7601-10A-01D-2086-08 Untested Somatic Phase_I WXS none Illumina GAIIx 61c1c39b-845d-4939-8f36-e74df0b879f4 1f027233-400d-4586-91d7-02f137b0a7d9 TAAAGCATTCTCTTGGATAGC 0.413 41 103 APBB2 323 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 4 41015610 41015610 + Silent SNP C C T TCGA-HT-7601-01A-11D-2086-08 TCGA-HT-7601-10A-01D-2086-08 Untested Somatic Phase_I WXS none Illumina GAIIx 61c1c39b-845d-4939-8f36-e74df0b879f4 1f027233-400d-4586-91d7-02f137b0a7d9 CTGTTTCATCCGGGGAGCTGG 0.512 55 168 NOM1 64434 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 7 156742958 156742958 + Missense_Mutation SNP T T C TCGA-HT-7601-01A-11D-2086-08 TCGA-HT-7601-10A-01D-2086-08 Untested Somatic Phase_I WXS none Illumina GAIIx 61c1c39b-845d-4939-8f36-e74df0b879f4 1f027233-400d-4586-91d7-02f137b0a7d9 CGGGCGCTTTTAGCGGCGAAC 0.672 21 73 KCNB2 9312 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 8 73849082 73849082 + Missense_Mutation SNP G G C TCGA-HT-7601-01A-11D-2086-08 TCGA-HT-7601-10A-01D-2086-08 Untested Somatic Phase_I WXS none Illumina GAIIx 61c1c39b-845d-4939-8f36-e74df0b879f4 1f027233-400d-4586-91d7-02f137b0a7d9 GGCCAGGAAGGCTCTGTCGGA 0.542 43 119 COL14A1 7373 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 8 121238908 121238908 + Missense_Mutation SNP C C T TCGA-HT-7601-01A-11D-2086-08 TCGA-HT-7601-10A-01D-2086-08 Untested Somatic Phase_I WXS none Illumina GAIIx 61c1c39b-845d-4939-8f36-e74df0b879f4 1f027233-400d-4586-91d7-02f137b0a7d9 GATGAGGTGACGACAGACAGT 0.483 32 60 KIAA0196 9897 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 8 126075804 126075804 + Silent SNP G G C TCGA-HT-7601-01A-11D-2086-08 TCGA-HT-7601-10A-01D-2086-08 Untested Somatic Phase_I WXS none Illumina GAIIx 61c1c39b-845d-4939-8f36-e74df0b879f4 1f027233-400d-4586-91d7-02f137b0a7d9 CTCCTGAAAAGACATCAGCAA 0.423 71 149 KLHL13 90293 hgsc.bcm.edu;broad.mit.edu 37 X 117032912 117032912 + Missense_Mutation SNP T T G TCGA-HT-7601-01A-11D-2086-08 TCGA-HT-7601-10A-01D-2086-08 Untested Somatic Phase_I WXS none Illumina GAIIx 61c1c39b-845d-4939-8f36-e74df0b879f4 1f027233-400d-4586-91d7-02f137b0a7d9 GGTGATGGTGTGGTTTCTTCT 0.418 13 152 RP11-726G1.1 0 broad.mit.edu;ucsc.edu 37 12 9717870 9717870 + RNA SNP A A T TCGA-HT-7601-01A-11D-2086-08 TCGA-HT-7601-10A-01D-2086-08 Untested Somatic Phase_I WXS none Illumina GAIIx 61c1c39b-845d-4939-8f36-e74df0b879f4 1f027233-400d-4586-91d7-02f137b0a7d9 CCAACGGATGAATTCCCATGG 0.448 17 16 TCF12 6938 broad.mit.edu;hgsc.bcm.edu 37 15 57555366 57555369 + Frame_Shift_Del DEL AAAG AAAG - TCGA-HT-7601-01A-11D-2086-08 TCGA-HT-7601-10A-01D-2086-08 Untested Somatic Phase_I WXS none Illumina GAIIx 61c1c39b-845d-4939-8f36-e74df0b879f4 1f027233-400d-4586-91d7-02f137b0a7d9 GACTGAAAACAAAGAAAAGGATGA 0.382 17 25