Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_file Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID ref_context gc_content t_alt_count t_ref_count RBP3 5949 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 10 48390723 48390723 + Missense_Mutation SNP A A G TCGA-HT-7603-01A-21D-2086-08 TCGA-HT-7603-10A-01D-2086-08 Untested Somatic Phase_I WXS none Illumina GAIIx 75dc5918-1fa5-4dba-bb41-e8057e228931 09b29d7c-9b2a-4808-9b8d-1fd650cc4fad GGCCTGCTGGATGGCTTCCTG 0.597 9 47 OR5P3 120066 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 11 7847281 7847281 + Missense_Mutation SNP A A G TCGA-HT-7603-01A-21D-2086-08 TCGA-HT-7603-10A-01D-2086-08 Untested Somatic Phase_I WXS none Illumina GAIIx 75dc5918-1fa5-4dba-bb41-e8057e228931 09b29d7c-9b2a-4808-9b8d-1fd650cc4fad CATGAGCATGACAGGTGTGAC 0.478 10 38 OR5P3 120066 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 11 7847305 7847305 + Missense_Mutation SNP C C G TCGA-HT-7603-01A-21D-2086-08 TCGA-HT-7603-10A-01D-2086-08 Untested Somatic Phase_I WXS none Illumina GAIIx 75dc5918-1fa5-4dba-bb41-e8057e228931 09b29d7c-9b2a-4808-9b8d-1fd650cc4fad TGAGGAGTACCCAATGTCTAC 0.438 12 42 DAGLA 747 hgsc.bcm.edu;broad.mit.edu 37 11 61504739 61504739 + Missense_Mutation SNP G G A TCGA-HT-7603-01A-21D-2086-08 TCGA-HT-7603-10A-01D-2086-08 Untested Somatic Phase_I WXS none Illumina GAIIx 75dc5918-1fa5-4dba-bb41-e8057e228931 09b29d7c-9b2a-4808-9b8d-1fd650cc4fad TTCCTTCTGCGCCCACAGTAT 0.647 17 289 C11orf82 0 hgsc.bcm.edu;broad.mit.edu 37 11 82644345 82644345 + Silent SNP A A G TCGA-HT-7603-01A-21D-2086-08 TCGA-HT-7603-10A-01D-2086-08 Untested Somatic Phase_I WXS none Illumina GAIIx 75dc5918-1fa5-4dba-bb41-e8057e228931 09b29d7c-9b2a-4808-9b8d-1fd650cc4fad TGCCTTGGGGACATATCAATA 0.343 9 151 TAOK3 51347 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 12 118693346 118693346 + Silent SNP T T C TCGA-HT-7603-01A-21D-2086-08 TCGA-HT-7603-10A-01D-2086-08 Untested Somatic Phase_I WXS none Illumina GAIIx 75dc5918-1fa5-4dba-bb41-e8057e228931 09b29d7c-9b2a-4808-9b8d-1fd650cc4fad CGGCAATCTCTGGGTCCTTCA 0.398 12 129 RIMBP2 23504 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 12 130898840 130898840 + Nonsense_Mutation SNP G G A TCGA-HT-7603-01A-21D-2086-08 TCGA-HT-7603-10A-01D-2086-08 Untested Somatic Phase_I WXS none Illumina GAIIx 75dc5918-1fa5-4dba-bb41-e8057e228931 09b29d7c-9b2a-4808-9b8d-1fd650cc4fad AGGCGGTCTCGCCCGTAATCG 0.567 22 30 RCBTB2 1102 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 13 49070412 49070412 + Missense_Mutation SNP T T C TCGA-HT-7603-01A-21D-2086-08 TCGA-HT-7603-10A-01D-2086-08 Untested Somatic Phase_I WXS none Illumina GAIIx 75dc5918-1fa5-4dba-bb41-e8057e228931 09b29d7c-9b2a-4808-9b8d-1fd650cc4fad TTGGCAGAGCTTTTTCAAACG 0.463 8 56 FAM124A 220108 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 13 51825995 51825995 + Silent SNP C C T TCGA-HT-7603-01A-21D-2086-08 TCGA-HT-7603-10A-01D-2086-08 Untested Somatic Phase_I WXS none Illumina GAIIx 75dc5918-1fa5-4dba-bb41-e8057e228931 09b29d7c-9b2a-4808-9b8d-1fd650cc4fad CCATCCGGCCCGTGCACTACG 0.632 4 6 TNRC6A 27327 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 16 24788378 24788378 + Missense_Mutation SNP G G T TCGA-HT-7603-01A-21D-2086-08 TCGA-HT-7603-10A-01D-2086-08 Untested Somatic Phase_I WXS none Illumina GAIIx 75dc5918-1fa5-4dba-bb41-e8057e228931 09b29d7c-9b2a-4808-9b8d-1fd650cc4fad agcagccacagcagcagcagc 0.597 11 27 TNRC6A 27327 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 16 24788379 24788379 + Nonsense_Mutation SNP C C T TCGA-HT-7603-01A-21D-2086-08 TCGA-HT-7603-10A-01D-2086-08 Untested Somatic Phase_I WXS none Illumina GAIIx 75dc5918-1fa5-4dba-bb41-e8057e228931 09b29d7c-9b2a-4808-9b8d-1fd650cc4fad gcagccacagcagcagcagca 0.602 11 25 SALL1 6299 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 16 51171049 51171049 + Missense_Mutation SNP C C A TCGA-HT-7603-01A-21D-2086-08 TCGA-HT-7603-10A-01D-2086-08 Untested Somatic Phase_I WXS none Illumina GAIIx 75dc5918-1fa5-4dba-bb41-e8057e228931 09b29d7c-9b2a-4808-9b8d-1fd650cc4fad TCCTTGCTGTCCTCCACGAAG 0.567 17 46 ACD 65057 hgsc.bcm.edu;broad.mit.edu 37 16 67694142 67694142 + Silent SNP C C T TCGA-HT-7603-01A-21D-2086-08 TCGA-HT-7603-10A-01D-2086-08 Untested Somatic Phase_I WXS none Illumina GAIIx 75dc5918-1fa5-4dba-bb41-e8057e228931 09b29d7c-9b2a-4808-9b8d-1fd650cc4fad CTACACCCAGCGGATGCAACG 0.706 3 55 CLUH 23277 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 17 2605307 2605307 + Nonsense_Mutation SNP G G A TCGA-HT-7603-01A-21D-2086-08 TCGA-HT-7603-10A-01D-2086-08 Untested Somatic Phase_I WXS none Illumina GAIIx 75dc5918-1fa5-4dba-bb41-e8057e228931 09b29d7c-9b2a-4808-9b8d-1fd650cc4fad AGCAGGTCTCGGACATGGCGC 0.627 12 18 TP53 7157 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 17 7577548 7577548 + Missense_Mutation SNP C C T rs28934575 TCGA-HT-7603-01A-21D-2086-08 TCGA-HT-7603-10A-01D-2086-08 Untested Somatic Phase_I WXS none Illumina GAIIx 75dc5918-1fa5-4dba-bb41-e8057e228931 09b29d7c-9b2a-4808-9b8d-1fd650cc4fad CGGTTCATGCCGCCCATGCAG 0.577 34 22 DSG2 1829 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 18 29126613 29126613 + Silent SNP T T C TCGA-HT-7603-01A-21D-2086-08 TCGA-HT-7603-10A-01D-2086-08 Untested Somatic Phase_I WXS none Illumina GAIIx 75dc5918-1fa5-4dba-bb41-e8057e228931 09b29d7c-9b2a-4808-9b8d-1fd650cc4fad TGCCAGATTTTGGTTTAGAGG 0.473 6 54 UBA2 10054 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 19 34929585 34929585 + Silent SNP G G A TCGA-HT-7603-01A-21D-2086-08 TCGA-HT-7603-10A-01D-2086-08 Untested Somatic Phase_I WXS none Illumina GAIIx 75dc5918-1fa5-4dba-bb41-e8057e228931 09b29d7c-9b2a-4808-9b8d-1fd650cc4fad ATCCTAAGCCGACCCAGAGAA 0.403 34 104 TMEM79 84283 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 1 156255699 156255699 + Missense_Mutation SNP C C T TCGA-HT-7603-01A-21D-2086-08 TCGA-HT-7603-10A-01D-2086-08 Untested Somatic Phase_I WXS none Illumina GAIIx 75dc5918-1fa5-4dba-bb41-e8057e228931 09b29d7c-9b2a-4808-9b8d-1fd650cc4fad TGATGTCCCACGGCTGCCCAC 0.607 54 140 MARC2 54996 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 1 220936309 220936309 + Silent SNP T T C TCGA-HT-7603-01A-21D-2086-08 TCGA-HT-7603-10A-01D-2086-08 Untested Somatic Phase_I WXS none Illumina GAIIx 75dc5918-1fa5-4dba-bb41-e8057e228931 09b29d7c-9b2a-4808-9b8d-1fd650cc4fad CCTGGTAGATTTGAATACCAG 0.502 10 46 IDH1 3417 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 2 209113112 209113112 + Missense_Mutation SNP C C T rs121913500 TCGA-HT-7603-01A-21D-2086-08 TCGA-HT-7603-10A-01D-2086-08 Untested Somatic Phase_I WXS none Illumina GAIIx 75dc5918-1fa5-4dba-bb41-e8057e228931 09b29d7c-9b2a-4808-9b8d-1fd650cc4fad ATAAGCATGACGACCTATGAT 0.393 13 34 ZNF860 344787 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 3 32031226 32031226 + Missense_Mutation SNP C C G TCGA-HT-7603-01A-21D-2086-08 TCGA-HT-7603-10A-01D-2086-08 Untested Somatic Phase_I WXS none Illumina GAIIx 75dc5918-1fa5-4dba-bb41-e8057e228931 09b29d7c-9b2a-4808-9b8d-1fd650cc4fad ATTACTCACACTAAAACAGGA 0.333 8 37 BCLAF1 9774 hgsc.bcm.edu;ucsc.edu 37 6 136597287 136597287 + Missense_Mutation SNP T T G TCGA-HT-7603-01A-21D-2086-08 TCGA-HT-7603-10A-01D-2086-08 Untested Somatic Phase_I WXS none Illumina GAIIx 75dc5918-1fa5-4dba-bb41-e8057e228931 09b29d7c-9b2a-4808-9b8d-1fd650cc4fad TTTAAGTTTATAATTTTTTTC 0.353 9 46 CHRNA6 8973 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 8 42620342 42620342 + Missense_Mutation SNP C C T TCGA-HT-7603-01A-21D-2086-08 TCGA-HT-7603-10A-01D-2086-08 Untested Somatic Phase_I WXS none Illumina GAIIx 75dc5918-1fa5-4dba-bb41-e8057e228931 09b29d7c-9b2a-4808-9b8d-1fd650cc4fad GCACAGCCCACACAGCCTGTG 0.562 29 74 FNBP1 23048 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 9 132757223 132757223 + Missense_Mutation SNP G G C TCGA-HT-7603-01A-21D-2086-08 TCGA-HT-7603-10A-01D-2086-08 Untested Somatic Phase_I WXS none Illumina GAIIx 75dc5918-1fa5-4dba-bb41-e8057e228931 09b29d7c-9b2a-4808-9b8d-1fd650cc4fad GTTTTTCTAAGTTGTCAAACT 0.333 29 99 ATRX 546 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 X 76909629 76909629 + Nonsense_Mutation SNP G G A TCGA-HT-7603-01A-21D-2086-08 TCGA-HT-7603-10A-01D-2086-08 Untested Somatic Phase_I WXS none Illumina GAIIx 75dc5918-1fa5-4dba-bb41-e8057e228931 09b29d7c-9b2a-4808-9b8d-1fd650cc4fad TTAATACGTCGCCTTTTCTTT 0.328 29 28 UTY 7404 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 Y 15410959 15410959 + Missense_Mutation SNP A A G TCGA-HT-7603-01A-21D-2086-08 TCGA-HT-7603-10A-01D-2086-08 Untested Somatic Phase_I WXS none Illumina GAIIx 75dc5918-1fa5-4dba-bb41-e8057e228931 09b29d7c-9b2a-4808-9b8d-1fd650cc4fad ATACACAGGGACATTTGCTTC 0.383 17 9 CEP95 90799 broad.mit.edu;ucsc.edu 37 17 62518886 62518886 + Missense_Mutation SNP T T G TCGA-HT-7603-01A-21D-2086-08 TCGA-HT-7603-10A-01D-2086-08 Untested Somatic Phase_I WXS none Illumina GAIIx 75dc5918-1fa5-4dba-bb41-e8057e228931 09b29d7c-9b2a-4808-9b8d-1fd650cc4fad CGAGCAGCTATTCCTTTACAT 0.483 5 46 SLC29A3 55315 broad.mit.edu;ucsc.edu 37 10 73122070 73122070 + Missense_Mutation SNP C C T TCGA-HT-7603-01A-21D-2086-08 TCGA-HT-7603-10A-01D-2086-08 Untested Somatic Phase_I WXS none Illumina GAIIx 75dc5918-1fa5-4dba-bb41-e8057e228931 09b29d7c-9b2a-4808-9b8d-1fd650cc4fad AATAGCAAGGCGCTCCCAGGG 0.602 30 57 CIRH1A 84916 broad.mit.edu;ucsc.edu 37 16 69199373 69199373 + Missense_Mutation SNP C C G TCGA-HT-7603-01A-21D-2086-08 TCGA-HT-7603-10A-01D-2086-08 Untested Somatic Phase_I WXS none Illumina GAIIx 75dc5918-1fa5-4dba-bb41-e8057e228931 09b29d7c-9b2a-4808-9b8d-1fd650cc4fad TCCCAAGAGACCGATGCACAT 0.463 11 42 GADD45GIP1 90480 broad.mit.edu;ucsc.edu 37 19 13065170 13065170 + Missense_Mutation SNP C C T TCGA-HT-7603-01A-21D-2086-08 TCGA-HT-7603-10A-01D-2086-08 Untested Somatic Phase_I WXS none Illumina GAIIx 75dc5918-1fa5-4dba-bb41-e8057e228931 09b29d7c-9b2a-4808-9b8d-1fd650cc4fad CTCCTGGAAGCGGGCACTCCT 0.622 20 34