Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_file Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID ref_context gc_content t_alt_count t_ref_count POLL 27343 hgsc.bcm.edu;broad.mit.edu 37 10 103343337 103343337 + Silent SNP G G A rs148400497 byFrequency TCGA-HT-7605-01A-11D-2086-08 TCGA-HT-7605-10A-01D-2086-08 Untested Somatic Phase_I WXS none Illumina GAIIx 19d69d6e-e741-4df9-ba72-c14e5111f81f b42925b4-0c56-428a-aca8-cbefe4d9dcaf AGACAGGCACGCTCTCACTGA 0.562 7 88 GPR162 27239 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 12 6933475 6933475 + Silent SNP C C T rs146153056 TCGA-HT-7605-01A-11D-2086-08 TCGA-HT-7605-10A-01D-2086-08 Untested Somatic Phase_I WXS none Illumina GAIIx 19d69d6e-e741-4df9-ba72-c14e5111f81f b42925b4-0c56-428a-aca8-cbefe4d9dcaf CACTGCATGCCGTCATGGGCA 0.617 28 61 FREM2 341640 hgsc.bcm.edu;broad.mit.edu 37 13 39265629 39265629 + Missense_Mutation SNP T T C TCGA-HT-7605-01A-11D-2086-08 TCGA-HT-7605-10A-01D-2086-08 Untested Somatic Phase_I WXS none Illumina GAIIx 19d69d6e-e741-4df9-ba72-c14e5111f81f b42925b4-0c56-428a-aca8-cbefe4d9dcaf ATTCAGTATGTCCATTTGGGG 0.413 11 184 RFX7 64864 hgsc.bcm.edu;broad.mit.edu 37 15 56387426 56387426 + Nonsense_Mutation SNP G G A TCGA-HT-7605-01A-11D-2086-08 TCGA-HT-7605-10A-01D-2086-08 Untested Somatic Phase_I WXS none Illumina GAIIx 19d69d6e-e741-4df9-ba72-c14e5111f81f b42925b4-0c56-428a-aca8-cbefe4d9dcaf CTATGTAGCTGCTGGCTATAT 0.393 8 149 EFTUD1 79631 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 15 82554109 82554109 + Missense_Mutation SNP T T C TCGA-HT-7605-01A-11D-2086-08 TCGA-HT-7605-10A-01D-2086-08 Untested Somatic Phase_I WXS none Illumina GAIIx 19d69d6e-e741-4df9-ba72-c14e5111f81f b42925b4-0c56-428a-aca8-cbefe4d9dcaf ATCCAAACTGTTGAGCACCAT 0.333 23 110 DNAH2 146754 hgsc.bcm.edu;broad.mit.edu 37 17 7708392 7708392 + Splice_Site SNP G G A TCGA-HT-7605-01A-11D-2086-08 TCGA-HT-7605-10A-01D-2086-08 Untested Somatic Phase_I WXS none Illumina GAIIx 19d69d6e-e741-4df9-ba72-c14e5111f81f b42925b4-0c56-428a-aca8-cbefe4d9dcaf AGGCCATGCGGGTACCAGGGG 0.582 4 72 MYH8 4626 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 17 10303716 10303716 + Silent SNP G G A TCGA-HT-7605-01A-11D-2086-08 TCGA-HT-7605-10A-01D-2086-08 Untested Somatic Phase_I WXS none Illumina GAIIx 19d69d6e-e741-4df9-ba72-c14e5111f81f b42925b4-0c56-428a-aca8-cbefe4d9dcaf CCTTGGCTTTGGAAATGGCCT 0.438 82 227 SLC25A39 51629 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 17 42399117 42399117 + Missense_Mutation SNP C C T TCGA-HT-7605-01A-11D-2086-08 TCGA-HT-7605-10A-01D-2086-08 Untested Somatic Phase_I WXS none Illumina GAIIx 19d69d6e-e741-4df9-ba72-c14e5111f81f b42925b4-0c56-428a-aca8-cbefe4d9dcaf TCGTGCCTCACGATCTTCACG 0.637 13 41 CACNA1G 8913 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 17 48652951 48652951 + Silent SNP G G A TCGA-HT-7605-01A-11D-2086-08 TCGA-HT-7605-10A-01D-2086-08 Untested Somatic Phase_I WXS none Illumina GAIIx 19d69d6e-e741-4df9-ba72-c14e5111f81f b42925b4-0c56-428a-aca8-cbefe4d9dcaf TGATTGCCACGCAGTTCTCAG 0.572 29 60 HAS1 3036 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 19 52220383 52220383 + Missense_Mutation SNP C C T TCGA-HT-7605-01A-11D-2086-08 TCGA-HT-7605-10A-01D-2086-08 Untested Somatic Phase_I WXS none Illumina GAIIx 19d69d6e-e741-4df9-ba72-c14e5111f81f b42925b4-0c56-428a-aca8-cbefe4d9dcaf CGGGGGTCCTCGTCCAGTACC 0.622 16 94 CLIC4 25932 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 1 25140630 25140630 + Silent SNP A A G TCGA-HT-7605-01A-11D-2086-08 TCGA-HT-7605-10A-01D-2086-08 Untested Somatic Phase_I WXS none Illumina GAIIx 19d69d6e-e741-4df9-ba72-c14e5111f81f b42925b4-0c56-428a-aca8-cbefe4d9dcaf CCCACCCACCATTTATAACTT 0.398 13 87 GEMIN6 79833 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 2 39008705 39008705 + Missense_Mutation SNP G G A TCGA-HT-7605-01A-11D-2086-08 TCGA-HT-7605-10A-01D-2086-08 Untested Somatic Phase_I WXS none Illumina GAIIx 19d69d6e-e741-4df9-ba72-c14e5111f81f b42925b4-0c56-428a-aca8-cbefe4d9dcaf GTCTGTGACCGGAATTATGGG 0.443 37 113 UXS1 80146 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 2 106746145 106746145 + Missense_Mutation SNP T T C TCGA-HT-7605-01A-11D-2086-08 TCGA-HT-7605-10A-01D-2086-08 Untested Somatic Phase_I WXS none Illumina GAIIx 19d69d6e-e741-4df9-ba72-c14e5111f81f b42925b4-0c56-428a-aca8-cbefe4d9dcaf ATGTTTAATGTCCCAATCGTA 0.378 15 26 NCKAP5 344148 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 2 133721292 133721292 + Splice_Site SNP C C T TCGA-HT-7605-01A-11D-2086-08 TCGA-HT-7605-10A-01D-2086-08 Untested Somatic Phase_I WXS none Illumina GAIIx 19d69d6e-e741-4df9-ba72-c14e5111f81f b42925b4-0c56-428a-aca8-cbefe4d9dcaf TCATTTCTTACCTCTAGAGCT 0.368 14 54 IDH1 3417 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 2 209113112 209113112 + Missense_Mutation SNP C C T rs121913500 TCGA-HT-7605-01A-11D-2086-08 TCGA-HT-7605-10A-01D-2086-08 Untested Somatic Phase_I WXS none Illumina GAIIx 19d69d6e-e741-4df9-ba72-c14e5111f81f b42925b4-0c56-428a-aca8-cbefe4d9dcaf ATAAGCATGACGACCTATGAT 0.393 37 77 MAATS1 89876 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 3 119465994 119465994 + Silent SNP C C T TCGA-HT-7605-01A-11D-2086-08 TCGA-HT-7605-10A-01D-2086-08 Untested Somatic Phase_I WXS none Illumina GAIIx 19d69d6e-e741-4df9-ba72-c14e5111f81f b42925b4-0c56-428a-aca8-cbefe4d9dcaf CTATAAGCTCCTACCTAGAAG 0.373 16 113 KIAA0922 23240 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 4 154542876 154542876 + Missense_Mutation SNP T T A TCGA-HT-7605-01A-11D-2086-08 TCGA-HT-7605-10A-01D-2086-08 Untested Somatic Phase_I WXS none Illumina GAIIx 19d69d6e-e741-4df9-ba72-c14e5111f81f b42925b4-0c56-428a-aca8-cbefe4d9dcaf TGCAGTGACTTTGAGAGGTCT 0.433 9 62 GIMAP5 55340 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 7 150439641 150439641 + Silent SNP T T C TCGA-HT-7605-01A-11D-2086-08 TCGA-HT-7605-10A-01D-2086-08 Untested Somatic Phase_I WXS none Illumina GAIIx 19d69d6e-e741-4df9-ba72-c14e5111f81f b42925b4-0c56-428a-aca8-cbefe4d9dcaf AAGAGGTCTTTGGGACAGGGG 0.582 16 136 ASAP1 50807 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 8 131370312 131370312 + Missense_Mutation SNP A A C TCGA-HT-7605-01A-11D-2086-08 TCGA-HT-7605-10A-01D-2086-08 Untested Somatic Phase_I WXS none Illumina GAIIx 19d69d6e-e741-4df9-ba72-c14e5111f81f b42925b4-0c56-428a-aca8-cbefe4d9dcaf CCGCGTGGTGAAGCTGGACGT 0.677 9 35 NOL6 65083 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 9 33467861 33467861 + Missense_Mutation SNP C C T TCGA-HT-7605-01A-11D-2086-08 TCGA-HT-7605-10A-01D-2086-08 Untested Somatic Phase_I WXS none Illumina GAIIx 19d69d6e-e741-4df9-ba72-c14e5111f81f b42925b4-0c56-428a-aca8-cbefe4d9dcaf ACTCAGTGGACGGAGACTGGA 0.602 6 51 CORO2A 7464 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 9 100897226 100897226 + Missense_Mutation SNP C C A TCGA-HT-7605-01A-11D-2086-08 TCGA-HT-7605-10A-01D-2086-08 Untested Somatic Phase_I WXS none Illumina GAIIx 19d69d6e-e741-4df9-ba72-c14e5111f81f b42925b4-0c56-428a-aca8-cbefe4d9dcaf TGGGGATGCTCCAGATCTTAA 0.632 26 64 TAF1 6872 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 X 70626502 70626502 + Missense_Mutation SNP G G T TCGA-HT-7605-01A-11D-2086-08 TCGA-HT-7605-10A-01D-2086-08 Untested Somatic Phase_I WXS none Illumina GAIIx 19d69d6e-e741-4df9-ba72-c14e5111f81f b42925b4-0c56-428a-aca8-cbefe4d9dcaf GATGAGGTTCGCAGAAAATCT 0.398 7 42 TANGO6 79613 broad.mit.edu;ucsc.edu 37 16 68900994 68900994 + Missense_Mutation SNP G G A TCGA-HT-7605-01A-11D-2086-08 TCGA-HT-7605-10A-01D-2086-08 Untested Somatic Phase_I WXS none Illumina GAIIx 19d69d6e-e741-4df9-ba72-c14e5111f81f b42925b4-0c56-428a-aca8-cbefe4d9dcaf CTGCACAGATGTGAAGACACA 0.473 40 84 KDM6B 23135 broad.mit.edu;ucsc.edu 37 17 7752905 7752905 + Missense_Mutation SNP C C A TCGA-HT-7605-01A-11D-2086-08 TCGA-HT-7605-10A-01D-2086-08 Untested Somatic Phase_I WXS none Illumina GAIIx 19d69d6e-e741-4df9-ba72-c14e5111f81f b42925b4-0c56-428a-aca8-cbefe4d9dcaf GAGGGGCCCCCCAAGGAGCTG 0.632 3 31 PTPRU 10076 broad.mit.edu;ucsc.edu 37 1 29585123 29585123 + Nonsense_Mutation SNP C C A TCGA-HT-7605-01A-11D-2086-08 TCGA-HT-7605-10A-01D-2086-08 Untested Somatic Phase_I WXS none Illumina GAIIx 19d69d6e-e741-4df9-ba72-c14e5111f81f b42925b4-0c56-428a-aca8-cbefe4d9dcaf AGTTCAGCTACTTCCTGTACA 0.602 21 202 FIP1L1 81608 broad.mit.edu;hgsc.bcm.edu 37 4 54324903 54324904 + Frame_Shift_Del DEL AT AT - TCGA-HT-7605-01A-11D-2086-08 TCGA-HT-7605-10A-01D-2086-08 Untested Somatic Phase_I WXS none Illumina GAIIx 19d69d6e-e741-4df9-ba72-c14e5111f81f b42925b4-0c56-428a-aca8-cbefe4d9dcaf GAAGAACGACATAGAGAAAGAC 0.381 11 41