Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_file Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID ref_context gc_content t_alt_count t_ref_count ANK3 288 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 10 61958113 61958113 + Silent SNP T T C TCGA-HT-7606-01A-11D-2086-08 TCGA-HT-7606-10A-01D-2086-08 Untested Somatic Phase_I WXS none Illumina GAIIx 9734311d-3183-459b-8200-7104fba3bf64 7c7214f7-036a-4ac9-9883-1a93d9eb6f10 TTGTTATAGATAAAGACGCTC 0.498 14 19 OR2AG2 338755 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 11 6789589 6789589 + Silent SNP G G A TCGA-HT-7606-01A-11D-2086-08 TCGA-HT-7606-10A-01D-2086-08 Untested Somatic Phase_I WXS none Illumina GAIIx 9734311d-3183-459b-8200-7104fba3bf64 7c7214f7-036a-4ac9-9883-1a93d9eb6f10 CACCTGTCACGTATATTATAA 0.493 10 18 SIPA1 6494 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 11 65408733 65408733 + Missense_Mutation SNP G G A TCGA-HT-7606-01A-11D-2086-08 TCGA-HT-7606-10A-01D-2086-08 Untested Somatic Phase_I WXS none Illumina GAIIx 9734311d-3183-459b-8200-7104fba3bf64 7c7214f7-036a-4ac9-9883-1a93d9eb6f10 CTTGAGCCTCGATGGTTTGCC 0.632 67 105 PLEKHA5 54477 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 12 19489486 19489486 + Missense_Mutation SNP A A C TCGA-HT-7606-01A-11D-2086-08 TCGA-HT-7606-10A-01D-2086-08 Untested Somatic Phase_I WXS none Illumina GAIIx 9734311d-3183-459b-8200-7104fba3bf64 7c7214f7-036a-4ac9-9883-1a93d9eb6f10 GATAAGTTAGAATACGATGTA 0.348 26 40 LRRK1 79705 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 15 101588788 101588788 + Silent SNP A A G TCGA-HT-7606-01A-11D-2086-08 TCGA-HT-7606-10A-01D-2086-08 Untested Somatic Phase_I WXS none Illumina GAIIx 9734311d-3183-459b-8200-7104fba3bf64 7c7214f7-036a-4ac9-9883-1a93d9eb6f10 GCTGTAGCACATTCAGAGTGA 0.448 58 35 TP53 7157 hgsc.bcm.edu;broad.mit.edu 37 17 7577121 7577121 + Missense_Mutation SNP G G A rs121913343 TCGA-HT-7606-01A-11D-2086-08 TCGA-HT-7606-10A-01D-2086-08 Untested Somatic Phase_I WXS none Illumina GAIIx 9734311d-3183-459b-8200-7104fba3bf64 7c7214f7-036a-4ac9-9883-1a93d9eb6f10 GCACAAACACGCACCTCAAAG 0.542 9 0 GAS2L2 246176 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 17 34079638 34079638 + Missense_Mutation SNP C C T TCGA-HT-7606-01A-11D-2086-08 TCGA-HT-7606-10A-01D-2086-08 Untested Somatic Phase_I WXS none Illumina GAIIx 9734311d-3183-459b-8200-7104fba3bf64 7c7214f7-036a-4ac9-9883-1a93d9eb6f10 GCCAGGAAGGCCAGGGCAGCG 0.652 23 38 HELZ 9931 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 17 65174991 65174991 + Missense_Mutation SNP C C T TCGA-HT-7606-01A-11D-2086-08 TCGA-HT-7606-10A-01D-2086-08 Untested Somatic Phase_I WXS none Illumina GAIIx 9734311d-3183-459b-8200-7104fba3bf64 7c7214f7-036a-4ac9-9883-1a93d9eb6f10 AGAATCCCAACGTTTAGCTGT 0.348 17 37 EPS15L1 58513 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 19 16487940 16487940 + Silent SNP C C T TCGA-HT-7606-01A-11D-2086-08 TCGA-HT-7606-10A-01D-2086-08 Untested Somatic Phase_I WXS none Illumina GAIIx 9734311d-3183-459b-8200-7104fba3bf64 7c7214f7-036a-4ac9-9883-1a93d9eb6f10 GACCGCTGGGCGGTTTAGGCC 0.612 15 23 FGR 2268 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 1 27943402 27943402 + Silent SNP G G A TCGA-HT-7606-01A-11D-2086-08 TCGA-HT-7606-10A-01D-2086-08 Untested Somatic Phase_I WXS none Illumina GAIIx 9734311d-3183-459b-8200-7104fba3bf64 7c7214f7-036a-4ac9-9883-1a93d9eb6f10 GCACCGAGTTGAACTGAACCC 0.562 70 141 ZSCAN20 7579 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 1 33960425 33960425 + Silent SNP T T G TCGA-HT-7606-01A-11D-2086-08 TCGA-HT-7606-10A-01D-2086-08 Untested Somatic Phase_I WXS none Illumina GAIIx 9734311d-3183-459b-8200-7104fba3bf64 7c7214f7-036a-4ac9-9883-1a93d9eb6f10 GTAGTGAGCCTGGGGGAAACT 0.448 93 154 LRRC8D 55144 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 1 90400076 90400076 + Silent SNP C C T TCGA-HT-7606-01A-11D-2086-08 TCGA-HT-7606-10A-01D-2086-08 Untested Somatic Phase_I WXS none Illumina GAIIx 9734311d-3183-459b-8200-7104fba3bf64 7c7214f7-036a-4ac9-9883-1a93d9eb6f10 CGGGGGTGCCCGATGCTGTCT 0.468 13 34 CFHR5 81494 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 1 196953247 196953247 + Missense_Mutation SNP C C T TCGA-HT-7606-01A-11D-2086-08 TCGA-HT-7606-10A-01D-2086-08 Untested Somatic Phase_I WXS none Illumina GAIIx 9734311d-3183-459b-8200-7104fba3bf64 7c7214f7-036a-4ac9-9883-1a93d9eb6f10 TGGTCCACTCCTCCCATATGC 0.348 21 49 ASPM 259266 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 1 197091601 197091601 + Missense_Mutation SNP G G A TCGA-HT-7606-01A-11D-2086-08 TCGA-HT-7606-10A-01D-2086-08 Untested Somatic Phase_I WXS none Illumina GAIIx 9734311d-3183-459b-8200-7104fba3bf64 7c7214f7-036a-4ac9-9883-1a93d9eb6f10 ACCAGTTTGCGTACATTCCAC 0.413 11 25 SLC25A1 6576 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 22 19164192 19164192 + Missense_Mutation SNP T T G TCGA-HT-7606-01A-11D-2086-08 TCGA-HT-7606-10A-01D-2086-08 Untested Somatic Phase_I WXS none Illumina GAIIx 9734311d-3183-459b-8200-7104fba3bf64 7c7214f7-036a-4ac9-9883-1a93d9eb6f10 TTCATGGGCTTGTTGGGGTTG 0.592 12 26 IDH1 3417 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 2 209113112 209113112 + Missense_Mutation SNP C C T rs121913500 TCGA-HT-7606-01A-11D-2086-08 TCGA-HT-7606-10A-01D-2086-08 Untested Somatic Phase_I WXS none Illumina GAIIx 9734311d-3183-459b-8200-7104fba3bf64 7c7214f7-036a-4ac9-9883-1a93d9eb6f10 ATAAGCATGACGACCTATGAT 0.393 35 56 VIL1 7429 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 2 219295519 219295519 + Silent SNP C C T TCGA-HT-7606-01A-11D-2086-08 TCGA-HT-7606-10A-01D-2086-08 Untested Somatic Phase_I WXS none Illumina GAIIx 9734311d-3183-459b-8200-7104fba3bf64 7c7214f7-036a-4ac9-9883-1a93d9eb6f10 CTGAGTCGGCCGTCTTTCAGC 0.597 19 47 PCDHA11 56138 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 5 140249016 140249016 + Missense_Mutation SNP G G A TCGA-HT-7606-01A-11D-2086-08 TCGA-HT-7606-10A-01D-2086-08 Untested Somatic Phase_I WXS none Illumina GAIIx 9734311d-3183-459b-8200-7104fba3bf64 7c7214f7-036a-4ac9-9883-1a93d9eb6f10 GGAGGTGATCGTGGACAGGCC 0.552 147 171 DUSP22 56940 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 6 348774 348774 + Silent SNP G G T TCGA-HT-7606-01A-11D-2086-08 TCGA-HT-7606-10A-01D-2086-08 Untested Somatic Phase_I WXS none Illumina GAIIx 9734311d-3183-459b-8200-7104fba3bf64 7c7214f7-036a-4ac9-9883-1a93d9eb6f10 TCCAGTATCGGCAGTGGCTGA 0.522 24 103 FIGNL1 63979 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 7 50513534 50513534 + Silent SNP T T C TCGA-HT-7606-01A-11D-2086-08 TCGA-HT-7606-10A-01D-2086-08 Untested Somatic Phase_I WXS none Illumina GAIIx 9734311d-3183-459b-8200-7104fba3bf64 7c7214f7-036a-4ac9-9883-1a93d9eb6f10 CAGCAAACAATGCACGGACCA 0.443 50 84 ZNF138 7697 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 7 64292367 64292367 + Missense_Mutation SNP A A C TCGA-HT-7606-01A-11D-2086-08 TCGA-HT-7606-10A-01D-2086-08 Untested Somatic Phase_I WXS none Illumina GAIIx 9734311d-3183-459b-8200-7104fba3bf64 7c7214f7-036a-4ac9-9883-1a93d9eb6f10 CTGGAGAAAAACCCTATAAAT 0.368 16 19 SEMA3C 10512 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 7 80374454 80374454 + Missense_Mutation SNP G G A TCGA-HT-7606-01A-11D-2086-08 TCGA-HT-7606-10A-01D-2086-08 Untested Somatic Phase_I WXS none Illumina GAIIx 9734311d-3183-459b-8200-7104fba3bf64 7c7214f7-036a-4ac9-9883-1a93d9eb6f10 CCATTTGTCCGTCACAACAGC 0.478 24 39 JPH1 56704 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 8 75171665 75171665 + Missense_Mutation SNP C C T TCGA-HT-7606-01A-11D-2086-08 TCGA-HT-7606-10A-01D-2086-08 Untested Somatic Phase_I WXS none Illumina GAIIx 9734311d-3183-459b-8200-7104fba3bf64 7c7214f7-036a-4ac9-9883-1a93d9eb6f10 ACAGCTCTCGCGATGTCGCAC 0.607 18 26 NUDCD1 84955 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 8 110287672 110287672 + Missense_Mutation SNP A A C TCGA-HT-7606-01A-11D-2086-08 TCGA-HT-7606-10A-01D-2086-08 Untested Somatic Phase_I WXS none Illumina GAIIx 9734311d-3183-459b-8200-7104fba3bf64 7c7214f7-036a-4ac9-9883-1a93d9eb6f10 ATCTCCAATTACTAGCTCTGG 0.383 11 31 EPPK1 83481 hgsc.bcm.edu;broad.mit.edu 37 8 144940576 144940576 + Silent SNP C C T TCGA-HT-7606-01A-11D-2086-08 TCGA-HT-7606-10A-01D-2086-08 Untested Somatic Phase_I WXS none Illumina GAIIx 9734311d-3183-459b-8200-7104fba3bf64 7c7214f7-036a-4ac9-9883-1a93d9eb6f10 CCTCCTCCACCGACAGCCTCA 0.736 4 73 ZFP37 7539 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 9 115811700 115811700 + Silent SNP T T C TCGA-HT-7606-01A-11D-2086-08 TCGA-HT-7606-10A-01D-2086-08 Untested Somatic Phase_I WXS none Illumina GAIIx 9734311d-3183-459b-8200-7104fba3bf64 7c7214f7-036a-4ac9-9883-1a93d9eb6f10 CTTGACTGGGTCTTTTCCCCT 0.403 27 7 DDX31 64794 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 9 135522404 135522404 + Missense_Mutation SNP T T C TCGA-HT-7606-01A-11D-2086-08 TCGA-HT-7606-10A-01D-2086-08 Untested Somatic Phase_I WXS none Illumina GAIIx 9734311d-3183-459b-8200-7104fba3bf64 7c7214f7-036a-4ac9-9883-1a93d9eb6f10 ACAGAAATACTGACTGGATCA 0.493 40 60 GSPT2 23708 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 X 51488448 51488448 + Missense_Mutation SNP G G A TCGA-HT-7606-01A-11D-2086-08 TCGA-HT-7606-10A-01D-2086-08 Untested Somatic Phase_I WXS none Illumina GAIIx 9734311d-3183-459b-8200-7104fba3bf64 7c7214f7-036a-4ac9-9883-1a93d9eb6f10 ACCCCGCTTCGTGAAACAAGA 0.418 24 24 ZCCHC5 203430 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 X 77912924 77912924 + Missense_Mutation SNP G G T TCGA-HT-7606-01A-11D-2086-08 TCGA-HT-7606-10A-01D-2086-08 Untested Somatic Phase_I WXS none Illumina GAIIx 9734311d-3183-459b-8200-7104fba3bf64 7c7214f7-036a-4ac9-9883-1a93d9eb6f10 CCTTGGCAGAGTTGATGGATG 0.463 9 23 TENM1 10178 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 X 123525932 123525932 + Silent SNP C C T TCGA-HT-7606-01A-11D-2086-08 TCGA-HT-7606-10A-01D-2086-08 Untested Somatic Phase_I WXS none Illumina GAIIx 9734311d-3183-459b-8200-7104fba3bf64 7c7214f7-036a-4ac9-9883-1a93d9eb6f10 TCCAAATTTTCCCATCAGCCC 0.378 15 8 KCNJ8 3764 broad.mit.edu;ucsc.edu 37 12 21926252 21926252 + Missense_Mutation SNP T T C TCGA-HT-7606-01A-11D-2086-08 TCGA-HT-7606-10A-01D-2086-08 Untested Somatic Phase_I WXS none Illumina GAIIx 9734311d-3183-459b-8200-7104fba3bf64 7c7214f7-036a-4ac9-9883-1a93d9eb6f10 AGCATAGATGTCCCCATGGGC 0.507 34 37 SMARCA4 6597 broad.mit.edu;ucsc.edu 37 19 11132434 11132434 + Missense_Mutation SNP C C A TCGA-HT-7606-01A-11D-2086-08 TCGA-HT-7606-10A-01D-2086-08 Untested Somatic Phase_I WXS none Illumina GAIIx 9734311d-3183-459b-8200-7104fba3bf64 7c7214f7-036a-4ac9-9883-1a93d9eb6f10 GGACGAAGGTCACCGCATGAA 0.622 14 19 PCDH18 54510 broad.mit.edu;ucsc.edu 37 4 138452008 138452008 + Missense_Mutation SNP T T C TCGA-HT-7606-01A-11D-2086-08 TCGA-HT-7606-10A-01D-2086-08 Untested Somatic Phase_I WXS none Illumina GAIIx 9734311d-3183-459b-8200-7104fba3bf64 7c7214f7-036a-4ac9-9883-1a93d9eb6f10 ATAATTGTTTTCATATGTCTT 0.403 3 26 RBM41 55285 broad.mit.edu;hgsc.bcm.edu 37 X 106331986 106331986 + Frame_Shift_Del DEL C C - TCGA-HT-7606-01A-11D-2086-08 TCGA-HT-7606-10A-01D-2086-08 Untested Somatic Phase_I WXS none Illumina GAIIx 9734311d-3183-459b-8200-7104fba3bf64 7c7214f7-036a-4ac9-9883-1a93d9eb6f10 TGAAACTCTTCAAGACGTTTT 0.428 15 26