Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_file Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID ref_context gc_content t_alt_count t_ref_count PDCD4 27250 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 10 112641024 112641024 + Missense_Mutation SNP G G A TCGA-HT-7607-01A-11D-2086-08 TCGA-HT-7607-10A-01D-2086-08 Untested Somatic Phase_I WXS none Illumina GAIIx 7b3ce734-c2b6-4dc3-9c1c-6dfd5d3aa6b3 fc524be3-8c05-4dda-ab66-c466d0c2d64f CTCTTTTCCGGTGATGAAGAA 0.318 25 139 BAG3 9531 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 10 121432114 121432114 + Silent SNP G G A rs147259596 byFrequency TCGA-HT-7607-01A-11D-2086-08 TCGA-HT-7607-10A-01D-2086-08 Untested Somatic Phase_I WXS none Illumina GAIIx 7b3ce734-c2b6-4dc3-9c1c-6dfd5d3aa6b3 fc524be3-8c05-4dda-ab66-c466d0c2d64f GGAGCAGCACGCCACTCCACT 0.657 8 82 OR4C15 81309 hgsc.bcm.edu;ucsc.edu 37 11 55322754 55322754 + Silent SNP G G A rs77547304 byFrequency TCGA-HT-7607-01A-11D-2086-08 TCGA-HT-7607-10A-01D-2086-08 Untested Somatic Phase_I WXS none Illumina GAIIx 7b3ce734-c2b6-4dc3-9c1c-6dfd5d3aa6b3 fc524be3-8c05-4dda-ab66-c466d0c2d64f ACAAAATGGCGGCAATATTTT 0.388 31 185 RAD51AP1 10635 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 12 4668029 4668029 + Missense_Mutation SNP C C T rs140432356 byFrequency TCGA-HT-7607-01A-11D-2086-08 TCGA-HT-7607-10A-01D-2086-08 Untested Somatic Phase_I WXS none Illumina GAIIx 7b3ce734-c2b6-4dc3-9c1c-6dfd5d3aa6b3 fc524be3-8c05-4dda-ab66-c466d0c2d64f TCAGCGGCATCTGGAGGTAGC 0.418 15 77 PA2G4 5036 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 12 56504773 56504773 + Missense_Mutation SNP C C T TCGA-HT-7607-01A-11D-2086-08 TCGA-HT-7607-10A-01D-2086-08 Untested Somatic Phase_I WXS none Illumina GAIIx 7b3ce734-c2b6-4dc3-9c1c-6dfd5d3aa6b3 fc524be3-8c05-4dda-ab66-c466d0c2d64f GAAGAAGGCTCGGATGGGTGT 0.418 19 67 MAX 4149 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 14 65544747 65544747 + Missense_Mutation SNP C C T TCGA-HT-7607-01A-11D-2086-08 TCGA-HT-7607-10A-01D-2086-08 Untested Somatic Phase_I WXS none Illumina GAIIx 7b3ce734-c2b6-4dc3-9c1c-6dfd5d3aa6b3 fc524be3-8c05-4dda-ab66-c466d0c2d64f GATTTGGGCCCGGGATGCCTG 0.498 22 70 HCN4 10021 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 15 73616140 73616140 + Missense_Mutation SNP G G A TCGA-HT-7607-01A-11D-2086-08 TCGA-HT-7607-10A-01D-2086-08 Untested Somatic Phase_I WXS none Illumina GAIIx 7b3ce734-c2b6-4dc3-9c1c-6dfd5d3aa6b3 fc524be3-8c05-4dda-ab66-c466d0c2d64f GGTTGGGGTGGCAGAGGCAGC 0.647 14 81 ACAN 176 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 15 89400165 89400165 + Missense_Mutation SNP G G T TCGA-HT-7607-01A-11D-2086-08 TCGA-HT-7607-10A-01D-2086-08 Untested Somatic Phase_I WXS none Illumina GAIIx 7b3ce734-c2b6-4dc3-9c1c-6dfd5d3aa6b3 fc524be3-8c05-4dda-ab66-c466d0c2d64f GAGATCAGCGGGCTTCCTTCT 0.512 29 136 ZP2 7783 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 16 21214448 21214448 + Missense_Mutation SNP A A G rs142277591 TCGA-HT-7607-01A-11D-2086-08 TCGA-HT-7607-10A-01D-2086-08 Untested Somatic Phase_I WXS none Illumina GAIIx 7b3ce734-c2b6-4dc3-9c1c-6dfd5d3aa6b3 fc524be3-8c05-4dda-ab66-c466d0c2d64f GTCTTTACCTATAGAAACGGG 0.418 12 54 PLEKHM1 9842 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 17 43545910 43545910 + Missense_Mutation SNP C C T TCGA-HT-7607-01A-11D-2086-08 TCGA-HT-7607-10A-01D-2086-08 Untested Somatic Phase_I WXS none Illumina GAIIx 7b3ce734-c2b6-4dc3-9c1c-6dfd5d3aa6b3 fc524be3-8c05-4dda-ab66-c466d0c2d64f TGGCTCAGTCCGTTGGTTGGC 0.517 11 81 PHF13 148479 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 1 6681634 6681634 + Silent SNP C C G TCGA-HT-7607-01A-11D-2086-08 TCGA-HT-7607-10A-01D-2086-08 Untested Somatic Phase_I WXS none Illumina GAIIx 7b3ce734-c2b6-4dc3-9c1c-6dfd5d3aa6b3 fc524be3-8c05-4dda-ab66-c466d0c2d64f GCCGGGACTCCAAGTTTGACA 0.577 20 82 CLDN19 149461 hgsc.bcm.edu;broad.mit.edu 37 1 43204166 43204166 + Missense_Mutation SNP G G A TCGA-HT-7607-01A-11D-2086-08 TCGA-HT-7607-10A-01D-2086-08 Untested Somatic Phase_I WXS none Illumina GAIIx 7b3ce734-c2b6-4dc3-9c1c-6dfd5d3aa6b3 fc524be3-8c05-4dda-ab66-c466d0c2d64f TCCCACCCGCGTACACTTCAT 0.637 4 53 C1orf106 0 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 1 200880683 200880683 + Silent SNP C C T TCGA-HT-7607-01A-11D-2086-08 TCGA-HT-7607-10A-01D-2086-08 Untested Somatic Phase_I WXS none Illumina GAIIx 7b3ce734-c2b6-4dc3-9c1c-6dfd5d3aa6b3 fc524be3-8c05-4dda-ab66-c466d0c2d64f CCTGCTTTCCCGCGACCAAGC 0.682 36 206 UGGT1 56886 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 2 128917277 128917277 + Missense_Mutation SNP G G A rs141470228 byFrequency TCGA-HT-7607-01A-11D-2086-08 TCGA-HT-7607-10A-01D-2086-08 Untested Somatic Phase_I WXS none Illumina GAIIx 7b3ce734-c2b6-4dc3-9c1c-6dfd5d3aa6b3 fc524be3-8c05-4dda-ab66-c466d0c2d64f AGCTGACATTGCGGAGTTCTC 0.567 19 79 IDH1 3417 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 2 209113112 209113112 + Missense_Mutation SNP C C T rs121913500 TCGA-HT-7607-01A-11D-2086-08 TCGA-HT-7607-10A-01D-2086-08 Untested Somatic Phase_I WXS none Illumina GAIIx 7b3ce734-c2b6-4dc3-9c1c-6dfd5d3aa6b3 fc524be3-8c05-4dda-ab66-c466d0c2d64f ATAAGCATGACGACCTATGAT 0.393 20 129 PIK3CA 5290 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 3 178928079 178928079 + Missense_Mutation SNP G G A TCGA-HT-7607-01A-11D-2086-08 TCGA-HT-7607-10A-01D-2086-08 Untested Somatic Phase_I WXS none Illumina GAIIx 7b3ce734-c2b6-4dc3-9c1c-6dfd5d3aa6b3 fc524be3-8c05-4dda-ab66-c466d0c2d64f TCATGGATTAGAAGATTTGCT 0.348 26 119 AHRR 57491 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 5 413500 413500 + Silent SNP G G A TCGA-HT-7607-01A-11D-2086-08 TCGA-HT-7607-10A-01D-2086-08 Untested Somatic Phase_I WXS none Illumina GAIIx 7b3ce734-c2b6-4dc3-9c1c-6dfd5d3aa6b3 fc524be3-8c05-4dda-ab66-c466d0c2d64f CAGAAGGGACGATATTTTATG 0.403 31 111 KIAA1191 57179 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 5 175779732 175779732 + Missense_Mutation SNP C C T TCGA-HT-7607-01A-11D-2086-08 TCGA-HT-7607-10A-01D-2086-08 Untested Somatic Phase_I WXS none Illumina GAIIx 7b3ce734-c2b6-4dc3-9c1c-6dfd5d3aa6b3 fc524be3-8c05-4dda-ab66-c466d0c2d64f GGAGGGTAGACTGGCCTCTCC 0.527 13 45 GMPR 2766 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 6 16295259 16295259 + Missense_Mutation SNP G G A TCGA-HT-7607-01A-11D-2086-08 TCGA-HT-7607-10A-01D-2086-08 Untested Somatic Phase_I WXS none Illumina GAIIx 7b3ce734-c2b6-4dc3-9c1c-6dfd5d3aa6b3 fc524be3-8c05-4dda-ab66-c466d0c2d64f TAAGACTGTGGAAGTTCCTTA 0.498 13 73 WDR27 253769 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 6 170052047 170052047 + Missense_Mutation SNP G G A TCGA-HT-7607-01A-11D-2086-08 TCGA-HT-7607-10A-01D-2086-08 Untested Somatic Phase_I WXS none Illumina GAIIx 7b3ce734-c2b6-4dc3-9c1c-6dfd5d3aa6b3 fc524be3-8c05-4dda-ab66-c466d0c2d64f CGCATAACCAGATGACCTAAC 0.428 11 36 TRRAP 8295 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 7 98508712 98508712 + Missense_Mutation SNP G G A TCGA-HT-7607-01A-11D-2086-08 TCGA-HT-7607-10A-01D-2086-08 Untested Somatic Phase_I WXS none Illumina GAIIx 7b3ce734-c2b6-4dc3-9c1c-6dfd5d3aa6b3 fc524be3-8c05-4dda-ab66-c466d0c2d64f CCAGATAGCAGGAAATGGACA 0.453 14 86 AOC1 26 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 7 150555011 150555011 + Missense_Mutation SNP G G A TCGA-HT-7607-01A-11D-2086-08 TCGA-HT-7607-10A-01D-2086-08 Untested Somatic Phase_I WXS none Illumina GAIIx 7b3ce734-c2b6-4dc3-9c1c-6dfd5d3aa6b3 fc524be3-8c05-4dda-ab66-c466d0c2d64f CACTGGCTACGTCCACGCCAC 0.557 27 134 COL27A1 85301 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 9 117050747 117050747 + Missense_Mutation SNP G G A TCGA-HT-7607-01A-11D-2086-08 TCGA-HT-7607-10A-01D-2086-08 Untested Somatic Phase_I WXS none Illumina GAIIx 7b3ce734-c2b6-4dc3-9c1c-6dfd5d3aa6b3 fc524be3-8c05-4dda-ab66-c466d0c2d64f GGAGCAGGGCGAGGACGGCAA 0.637 4 22 NLGN4X 57502 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 X 5811260 5811260 + Silent SNP C C T TCGA-HT-7607-01A-11D-2086-08 TCGA-HT-7607-10A-01D-2086-08 Untested Somatic Phase_I WXS none Illumina GAIIx 7b3ce734-c2b6-4dc3-9c1c-6dfd5d3aa6b3 fc524be3-8c05-4dda-ab66-c466d0c2d64f AGAGGAGCGACGCCCCGACGG 0.522 26 102 GABRA3 2556 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 X 151532994 151532994 + Missense_Mutation SNP G G C TCGA-HT-7607-01A-11D-2086-08 TCGA-HT-7607-10A-01D-2086-08 Untested Somatic Phase_I WXS none Illumina GAIIx 7b3ce734-c2b6-4dc3-9c1c-6dfd5d3aa6b3 fc524be3-8c05-4dda-ab66-c466d0c2d64f ATCAGGAAAAGAATCCCAAGG 0.453 35 139 OFD1 8481 broad.mit.edu;ucsc.edu 37 X 13786333 13786333 + Missense_Mutation SNP C C T TCGA-HT-7607-01A-11D-2086-08 TCGA-HT-7607-10A-01D-2086-08 Untested Somatic Phase_I WXS none Illumina GAIIx 7b3ce734-c2b6-4dc3-9c1c-6dfd5d3aa6b3 fc524be3-8c05-4dda-ab66-c466d0c2d64f GACCAGGAGTCGGCAGATAAG 0.478 16 105 ING1 3621 broad.mit.edu;ucsc.edu 37 13 111372025 111372025 + Nonsense_Mutation SNP C C T TCGA-HT-7607-01A-11D-2086-08 TCGA-HT-7607-10A-01D-2086-08 Untested Somatic Phase_I WXS none Illumina GAIIx 7b3ce734-c2b6-4dc3-9c1c-6dfd5d3aa6b3 fc524be3-8c05-4dda-ab66-c466d0c2d64f CAAGGCGGAGCGAGAGGCGTC 0.627 14 42 HCFC1 3054 broad.mit.edu;ucsc.edu 37 X 153228837 153228837 + Missense_Mutation SNP A A C TCGA-HT-7607-01A-11D-2086-08 TCGA-HT-7607-10A-01D-2086-08 Untested Somatic Phase_I WXS none Illumina GAIIx 7b3ce734-c2b6-4dc3-9c1c-6dfd5d3aa6b3 fc524be3-8c05-4dda-ab66-c466d0c2d64f CCAGGCTACCACTCCAGAGCC 0.522 15 64 FRMPD4 9758 broad.mit.edu;ucsc.edu 37 X 12720061 12720061 + Silent SNP C C T TCGA-HT-7607-01A-11D-2086-08 TCGA-HT-7607-10A-01D-2086-08 Untested Somatic Phase_I WXS none Illumina GAIIx 7b3ce734-c2b6-4dc3-9c1c-6dfd5d3aa6b3 fc524be3-8c05-4dda-ab66-c466d0c2d64f TGCGGCTGGCCGCATTACAAA 0.507 36 138 POT1 25913 broad.mit.edu;ucsc.edu 37 7 124499166 124499166 + Splice_Site SNP C C A TCGA-HT-7607-01A-11D-2086-08 TCGA-HT-7607-10A-01D-2086-08 Untested Somatic Phase_I WXS none Illumina GAIIx 7b3ce734-c2b6-4dc3-9c1c-6dfd5d3aa6b3 fc524be3-8c05-4dda-ab66-c466d0c2d64f CCATCCCATACCTGCCATAAG 0.353 8 47