Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	ref_context	gc_content	t_alt_count	t_ref_count
OR13A1	79290	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	10	45799361	45799361	+	Silent	SNP	G	G	A			TCGA-HT-7676-01A-11D-2395-08	TCGA-HT-7676-10B-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	f7e2e119-549c-4b01-9587-b0227f5b0d55	f0d2df47-aeac-49c2-a537-641c574a3d9e	TGTTGACGGCGCAGAGCAGCC	0.607	39	59
PMEL	6490	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	12	56351068	56351068	+	Missense_Mutation	SNP	G	G	A			TCGA-HT-7676-01A-11D-2395-08	TCGA-HT-7676-10B-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	f7e2e119-549c-4b01-9587-b0227f5b0d55	f0d2df47-aeac-49c2-a537-641c574a3d9e	TGCAGTTGGCGCCTGACCAGG	0.577	31	49
DDX51	317781	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	12	132624720	132624720	+	Silent	SNP	C	C	T			TCGA-HT-7676-01A-11D-2395-08	TCGA-HT-7676-10B-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	f7e2e119-549c-4b01-9587-b0227f5b0d55	f0d2df47-aeac-49c2-a537-641c574a3d9e	CGATGCCTCGCGCGGTGGCGT	0.711	34	69
TP53	7157	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	17	7578394	7578394	+	Missense_Mutation	SNP	T	T	C			TCGA-HT-7676-01A-11D-2395-08	TCGA-HT-7676-10B-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	f7e2e119-549c-4b01-9587-b0227f5b0d55	f0d2df47-aeac-49c2-a537-641c574a3d9e	GCAGCGCTCATGGTGGGGGCA	0.642	58	12
KRT20	54474	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	17	39041356	39041356	+	Missense_Mutation	SNP	G	G	A			TCGA-HT-7676-01A-11D-2395-08	TCGA-HT-7676-10B-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	f7e2e119-549c-4b01-9587-b0227f5b0d55	f0d2df47-aeac-49c2-a537-641c574a3d9e	GTCCCGAGGCGCTGCATGCCC	0.597	26	34
ZADH2	284273	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	18	72913406	72913406	+	Missense_Mutation	SNP	C	C	T			TCGA-HT-7676-01A-11D-2395-08	TCGA-HT-7676-10B-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	f7e2e119-549c-4b01-9587-b0227f5b0d55	f0d2df47-aeac-49c2-a537-641c574a3d9e	GGTAATTCAACTACAATTTTT	0.398	23	39
PAPPA2	60676	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	1	176734861	176734861	+	Missense_Mutation	SNP	C	C	T			TCGA-HT-7676-01A-11D-2395-08	TCGA-HT-7676-10B-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	f7e2e119-549c-4b01-9587-b0227f5b0d55	f0d2df47-aeac-49c2-a537-641c574a3d9e	CTTGATCATGCTGATGTGGTG	0.507	18	122
IDH1	3417	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	2	209113112	209113112	+	Missense_Mutation	SNP	C	C	T	rs121913500		TCGA-HT-7676-01A-11D-2395-08	TCGA-HT-7676-10B-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	f7e2e119-549c-4b01-9587-b0227f5b0d55	f0d2df47-aeac-49c2-a537-641c574a3d9e	ATAAGCATGACGACCTATGAT	0.393	31	47
ETV5	2119	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	3	185769871	185769871	+	Missense_Mutation	SNP	T	T	C			TCGA-HT-7676-01A-11D-2395-08	TCGA-HT-7676-10B-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	f7e2e119-549c-4b01-9587-b0227f5b0d55	f0d2df47-aeac-49c2-a537-641c574a3d9e	GCTCAGCTTGTCATAGTTCAT	0.522	13	128
AHRR	57491	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	5	423984	423984	+	Silent	SNP	C	C	G			TCGA-HT-7676-01A-11D-2395-08	TCGA-HT-7676-10B-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	f7e2e119-549c-4b01-9587-b0227f5b0d55	f0d2df47-aeac-49c2-a537-641c574a3d9e	GGAGGCTGCTCAGGGCCCAGG	0.652	47	52
ZDHHC14	79683	hgsc.bcm.edu;broad.mit.edu	37	6	158014166	158014166	+	Missense_Mutation	SNP	G	G	C			TCGA-HT-7676-01A-11D-2395-08	TCGA-HT-7676-10B-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	f7e2e119-549c-4b01-9587-b0227f5b0d55	f0d2df47-aeac-49c2-a537-641c574a3d9e	CAGCCTTTGTGATAACTGCGT	0.582	4	88
ZNF704	619279	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	8	81577128	81577128	+	Silent	SNP	C	C	T			TCGA-HT-7676-01A-11D-2395-08	TCGA-HT-7676-10B-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	f7e2e119-549c-4b01-9587-b0227f5b0d55	f0d2df47-aeac-49c2-a537-641c574a3d9e	ACTTAGTCTCCGTTTTGGCAC	0.577	52	82
FER1L6	654463	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	8	125113341	125113341	+	Missense_Mutation	SNP	G	G	T			TCGA-HT-7676-01A-11D-2395-08	TCGA-HT-7676-10B-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	f7e2e119-549c-4b01-9587-b0227f5b0d55	f0d2df47-aeac-49c2-a537-641c574a3d9e	TTTTTAGGTGGTTAAAGGGCT	0.408	22	39
SEMA4B	10509	broad.mit.edu;ucsc.edu	37	15	90768923	90768923	+	Missense_Mutation	SNP	G	G	A			TCGA-HT-7676-01A-11D-2395-08	TCGA-HT-7676-10B-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	f7e2e119-549c-4b01-9587-b0227f5b0d55	f0d2df47-aeac-49c2-a537-641c574a3d9e	ACACTCGGGCGTAGTCCAGGT	0.672	4	5
KIAA1009	22832	broad.mit.edu;ucsc.edu	37	6	84896080	84896080	+	Silent	SNP	T	T	C			TCGA-HT-7676-01A-11D-2395-08	TCGA-HT-7676-10B-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	f7e2e119-549c-4b01-9587-b0227f5b0d55	f0d2df47-aeac-49c2-a537-641c574a3d9e	GAGATAATGATGAAGAATTAA	0.279	17	34
TPP2	7174	broad.mit.edu;ucsc.edu	37	13	103328687	103328687	+	Missense_Mutation	SNP	G	G	A			TCGA-HT-7676-01A-11D-2395-08	TCGA-HT-7676-10B-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	f7e2e119-549c-4b01-9587-b0227f5b0d55	f0d2df47-aeac-49c2-a537-641c574a3d9e	TAAATAAAATGTATGGGAGAG	0.264	3	27
ATRX	546	broad.mit.edu;hgsc.bcm.edu	37	X	76855230	76855230	+	Frame_Shift_Del	DEL	G	G	-			TCGA-HT-7676-01A-11D-2395-08	TCGA-HT-7676-10B-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	f7e2e119-549c-4b01-9587-b0227f5b0d55	f0d2df47-aeac-49c2-a537-641c574a3d9e	TTAAACTCATGGAGGTTTCAT	0.338	22	8