Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_file Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID ref_context gc_content t_alt_count t_ref_count CYP2C19 1557 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 10 96602618 96602618 + Missense_Mutation SNP G G A rs138142612 TCGA-HT-7677-01A-11D-2253-08 TCGA-HT-7677-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx 7a4bfd9a-4a16-41c9-91cb-97351c76ab0e d27dc741-a306-47c4-a333-155ac43c9484 GAGATTGAACGTGTCGTTGGC 0.498 22 172 OR52B6 340980 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 11 5603034 5603034 + Missense_Mutation SNP G G A TCGA-HT-7677-01A-11D-2253-08 TCGA-HT-7677-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx 7a4bfd9a-4a16-41c9-91cb-97351c76ab0e d27dc741-a306-47c4-a333-155ac43c9484 GCTCAATCCCGTTATTTATGG 0.443 74 98 LTBR 4055 hgsc.bcm.edu;broad.mit.edu 37 12 6499942 6499942 + Missense_Mutation SNP G G A TCGA-HT-7677-01A-11D-2253-08 TCGA-HT-7677-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx 7a4bfd9a-4a16-41c9-91cb-97351c76ab0e d27dc741-a306-47c4-a333-155ac43c9484 AGCTACCCCCGAACCTCCATA 0.612 7 154 KRT75 9119 hgsc.bcm.edu;broad.mit.edu 37 12 52822506 52822506 + Missense_Mutation SNP C C T rs140579691 byFrequency TCGA-HT-7677-01A-11D-2253-08 TCGA-HT-7677-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx 7a4bfd9a-4a16-41c9-91cb-97351c76ab0e d27dc741-a306-47c4-a333-155ac43c9484 TGTCTGCCTGCGGTGACCTGC 0.547 10 137 HVCN1 84329 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 12 111099098 111099098 + Silent SNP G G C TCGA-HT-7677-01A-11D-2253-08 TCGA-HT-7677-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx 7a4bfd9a-4a16-41c9-91cb-97351c76ab0e d27dc741-a306-47c4-a333-155ac43c9484 AGACTGGTGTGGGTGGTGGCT 0.622 24 80 HCAR1 27198 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 12 123214713 123214713 + Silent SNP G G A TCGA-HT-7677-01A-11D-2253-08 TCGA-HT-7677-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx 7a4bfd9a-4a16-41c9-91cb-97351c76ab0e d27dc741-a306-47c4-a333-155ac43c9484 AATCAGCCACGGCCAAATTGA 0.542 21 36 PTPN9 5780 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 15 75761319 75761319 + Missense_Mutation SNP A A C TCGA-HT-7677-01A-11D-2253-08 TCGA-HT-7677-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx 7a4bfd9a-4a16-41c9-91cb-97351c76ab0e d27dc741-a306-47c4-a333-155ac43c9484 AGTGAGCAGAAGGTACCTGAA 0.512 17 25 IL17C 27189 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 16 88705399 88705399 + Missense_Mutation SNP G G A TCGA-HT-7677-01A-11D-2253-08 TCGA-HT-7677-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx 7a4bfd9a-4a16-41c9-91cb-97351c76ab0e d27dc741-a306-47c4-a333-155ac43c9484 CTCCTCCCCGGCCTCCTGTTT 0.642 58 257 DSC2 1824 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 18 28650804 28650804 + Missense_Mutation SNP G G A TCGA-HT-7677-01A-11D-2253-08 TCGA-HT-7677-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx 7a4bfd9a-4a16-41c9-91cb-97351c76ab0e d27dc741-a306-47c4-a333-155ac43c9484 ACAGACCAGCGTAAACAGGAT 0.363 16 67 MIDN 90007 hgsc.bcm.edu;broad.mit.edu 37 19 1255053 1255053 + Silent SNP C C T TCGA-HT-7677-01A-11D-2253-08 TCGA-HT-7677-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx 7a4bfd9a-4a16-41c9-91cb-97351c76ab0e d27dc741-a306-47c4-a333-155ac43c9484 TCTCAGGGACCTTCTCTGGTA 0.617 6 106 FCHO1 23149 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 19 17886277 17886277 + Missense_Mutation SNP G G A TCGA-HT-7677-01A-11D-2253-08 TCGA-HT-7677-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx 7a4bfd9a-4a16-41c9-91cb-97351c76ab0e d27dc741-a306-47c4-a333-155ac43c9484 ATGTCCAGAGGTGGATGAAGA 0.597 25 243 CIC 23152 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 19 42799051 42799051 + Missense_Mutation SNP G G T TCGA-HT-7677-01A-11D-2253-08 TCGA-HT-7677-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx 7a4bfd9a-4a16-41c9-91cb-97351c76ab0e d27dc741-a306-47c4-a333-155ac43c9484 TTGAAGATCCGTGAGGTGCGC 0.627 64 28 CA11 770 hgsc.bcm.edu;broad.mit.edu 37 19 49143394 49143394 + Silent SNP G G A TCGA-HT-7677-01A-11D-2253-08 TCGA-HT-7677-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx 7a4bfd9a-4a16-41c9-91cb-97351c76ab0e d27dc741-a306-47c4-a333-155ac43c9484 GTTCCGAGCCGGCTCCGTCGC 0.607 6 94 ITLN1 55600 hgsc.bcm.edu;ucsc.edu 37 1 160851055 160851055 + Silent SNP G G A rs61734482 byFrequency TCGA-HT-7677-01A-11D-2253-08 TCGA-HT-7677-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx 7a4bfd9a-4a16-41c9-91cb-97351c76ab0e d27dc741-a306-47c4-a333-155ac43c9484 TATTGGGCACGTGCCAGATGC 0.587 36 242 F5 2153 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 1 169524423 169524423 + Missense_Mutation SNP T T C TCGA-HT-7677-01A-11D-2253-08 TCGA-HT-7677-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx 7a4bfd9a-4a16-41c9-91cb-97351c76ab0e d27dc741-a306-47c4-a333-155ac43c9484 AACTCACTTGTCCATATTCGC 0.468 35 232 CFHR3 10878 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 1 196749062 196749062 + Missense_Mutation SNP C C T TCGA-HT-7677-01A-11D-2253-08 TCGA-HT-7677-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx 7a4bfd9a-4a16-41c9-91cb-97351c76ab0e d27dc741-a306-47c4-a333-155ac43c9484 GTTACATGTACGGAGAAAGGC 0.473 41 79 MRAP 56246 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 21 33684248 33684248 + Missense_Mutation SNP G G A TCGA-HT-7677-01A-11D-2253-08 TCGA-HT-7677-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx 7a4bfd9a-4a16-41c9-91cb-97351c76ab0e d27dc741-a306-47c4-a333-155ac43c9484 GGGTCCCCTCGTCAGGAGCAA 0.602 35 57 SPTBN1 6711 hgsc.bcm.edu;broad.mit.edu 37 2 54859857 54859857 + Missense_Mutation SNP A A G TCGA-HT-7677-01A-11D-2253-08 TCGA-HT-7677-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx 7a4bfd9a-4a16-41c9-91cb-97351c76ab0e d27dc741-a306-47c4-a333-155ac43c9484 AGCGATGGGAACATCAACTCA 0.507 3 58 SCN3A 6328 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 2 165948831 165948831 + Silent SNP G G C TCGA-HT-7677-01A-11D-2253-08 TCGA-HT-7677-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx 7a4bfd9a-4a16-41c9-91cb-97351c76ab0e d27dc741-a306-47c4-a333-155ac43c9484 AGTAGTGTCTGAGGGAGACGA 0.438 40 62 IDH1 3417 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 2 209113112 209113112 + Missense_Mutation SNP C C T rs121913500 TCGA-HT-7677-01A-11D-2253-08 TCGA-HT-7677-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx 7a4bfd9a-4a16-41c9-91cb-97351c76ab0e d27dc741-a306-47c4-a333-155ac43c9484 ATAAGCATGACGACCTATGAT 0.393 37 53 FGD5 152273 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 3 14862573 14862573 + Silent SNP G G A TCGA-HT-7677-01A-11D-2253-08 TCGA-HT-7677-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx 7a4bfd9a-4a16-41c9-91cb-97351c76ab0e d27dc741-a306-47c4-a333-155ac43c9484 AGAAGAAGACGGAGAACAAAT 0.512 34 40 XIRP1 165904 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 3 39227360 39227360 + Missense_Mutation SNP G G A TCGA-HT-7677-01A-11D-2253-08 TCGA-HT-7677-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx 7a4bfd9a-4a16-41c9-91cb-97351c76ab0e d27dc741-a306-47c4-a333-155ac43c9484 GGCTCCTCCCGCCCTGGCCCA 0.677 6 47 DDX39B 7919 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 6 31506618 31506618 + Silent SNP C C T TCGA-HT-7677-01A-11D-2253-08 TCGA-HT-7677-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx 7a4bfd9a-4a16-41c9-91cb-97351c76ab0e d27dc741-a306-47c4-a333-155ac43c9484 TGTGACACATCACCAGTACAG 0.453 11 87 RARS2 57038 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 6 88229954 88229954 + Missense_Mutation SNP C C A TCGA-HT-7677-01A-11D-2253-08 TCGA-HT-7677-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx 7a4bfd9a-4a16-41c9-91cb-97351c76ab0e d27dc741-a306-47c4-a333-155ac43c9484 GCTGAAAATGCTTTTTTTGTC 0.328 26 157 FHL5 9457 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 6 97053913 97053913 + Missense_Mutation SNP A A G TCGA-HT-7677-01A-11D-2253-08 TCGA-HT-7677-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx 7a4bfd9a-4a16-41c9-91cb-97351c76ab0e d27dc741-a306-47c4-a333-155ac43c9484 TGTTTTGAGAAGGAGTTTGCT 0.383 10 68 EYA4 2070 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 6 133783471 133783471 + Splice_Site SNP A A T TCGA-HT-7677-01A-11D-2253-08 TCGA-HT-7677-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx 7a4bfd9a-4a16-41c9-91cb-97351c76ab0e d27dc741-a306-47c4-a333-155ac43c9484 TCTGATATTTAGGCCCTATCC 0.438 32 222 NPSR1 387129 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 7 34724169 34724169 + Silent SNP G G A TCGA-HT-7677-01A-11D-2253-08 TCGA-HT-7677-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx 7a4bfd9a-4a16-41c9-91cb-97351c76ab0e d27dc741-a306-47c4-a333-155ac43c9484 TGCAGACTGAGCAATTGATAA 0.433 39 70 PSD3 23362 hgsc.bcm.edu;broad.mit.edu 37 8 18393449 18393449 + Missense_Mutation SNP T T C TCGA-HT-7677-01A-11D-2253-08 TCGA-HT-7677-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx 7a4bfd9a-4a16-41c9-91cb-97351c76ab0e d27dc741-a306-47c4-a333-155ac43c9484 AATGCTGACATACATTTCATA 0.488 4 100 NUGGC 389643 hgsc.bcm.edu;broad.mit.edu 37 8 27891083 27891083 + Silent SNP G G T TCGA-HT-7677-01A-11D-2253-08 TCGA-HT-7677-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx 7a4bfd9a-4a16-41c9-91cb-97351c76ab0e d27dc741-a306-47c4-a333-155ac43c9484 AAACAGGGTCGATCTGGTCAT 0.453 4 43 DMRTA1 63951 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 9 22451627 22451627 + Missense_Mutation SNP C C T TCGA-HT-7677-01A-11D-2253-08 TCGA-HT-7677-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx 7a4bfd9a-4a16-41c9-91cb-97351c76ab0e d27dc741-a306-47c4-a333-155ac43c9484 GCTTTCTCTCCTCTTCAAACT 0.408 29 84 SOX17 64321 broad.mit.edu;ucsc.edu 37 8 55372386 55372386 + Missense_Mutation SNP A A G TCGA-HT-7677-01A-11D-2253-08 TCGA-HT-7677-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx 7a4bfd9a-4a16-41c9-91cb-97351c76ab0e d27dc741-a306-47c4-a333-155ac43c9484 GGGGAGGTGGACCGCACGGAA 0.692 14 41 TRAF7 84231 broad.mit.edu;ucsc.edu 37 16 2223509 2223509 + Missense_Mutation SNP T T C TCGA-HT-7677-01A-11D-2253-08 TCGA-HT-7677-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx 7a4bfd9a-4a16-41c9-91cb-97351c76ab0e d27dc741-a306-47c4-a333-155ac43c9484 CAGAGCAAGCTCAGCGAGGAC 0.682 40 66 EMG1 10436 broad.mit.edu;ucsc.edu 37 12 7083747 7083747 + RNA SNP C C T TCGA-HT-7677-01A-11D-2253-08 TCGA-HT-7677-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx 7a4bfd9a-4a16-41c9-91cb-97351c76ab0e d27dc741-a306-47c4-a333-155ac43c9484 TCCCCTGAACCGAGCTGGCTT 0.493 16 34 FUBP1 8880 broad.mit.edu;hgsc.bcm.edu 37 1 78430643 78430643 + Frame_Shift_Del DEL C C - TCGA-HT-7677-01A-11D-2253-08 TCGA-HT-7677-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx 7a4bfd9a-4a16-41c9-91cb-97351c76ab0e d27dc741-a306-47c4-a333-155ac43c9484 CATTTTAACTCCAGCCCGTTC 0.363 44 33 TRIP12 9320 broad.mit.edu;hgsc.bcm.edu 37 2 230638967 230638968 + Frame_Shift_Del DEL CT CT - TCGA-HT-7677-01A-11D-2253-08 TCGA-HT-7677-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx 7a4bfd9a-4a16-41c9-91cb-97351c76ab0e d27dc741-a306-47c4-a333-155ac43c9484 ATACTGTAGACTCTCTTTGGTC 0.361 44 64 ARID1B 57492 broad.mit.edu;hgsc.bcm.edu 37 6 157469999 157469999 + Frame_Shift_Del DEL G G - TCGA-HT-7677-01A-11D-2253-08 TCGA-HT-7677-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx 7a4bfd9a-4a16-41c9-91cb-97351c76ab0e d27dc741-a306-47c4-a333-155ac43c9484 GGCCAGGAATGGGGCCGCCAA 0.587 31 62 OR7A17 26333 broad.mit.edu;hgsc.bcm.edu 37 19 14991283 14991284 + Frame_Shift_Del DEL TT TT - TCGA-HT-7677-01A-11D-2253-08 TCGA-HT-7677-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx 7a4bfd9a-4a16-41c9-91cb-97351c76ab0e d27dc741-a306-47c4-a333-155ac43c9484 TCTTTATGTCTTTATTCCTCAG 0.436 20 86