Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_file Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID ref_context gc_content t_alt_count t_ref_count VAX1 11023 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 10 118896039 118896039 + Missense_Mutation SNP C C T TCGA-HT-7687-01A-11D-2253-08 TCGA-HT-7687-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx e34b8386-87a8-421b-a6bd-508c451d5300 4172944b-df65-47bc-8567-9748e088836a CGGCCCACCACGTACTGGCAG 0.667 17 54 C11orf42 0 hgsc.bcm.edu;broad.mit.edu 37 11 6231500 6231500 + Missense_Mutation SNP G G C TCGA-HT-7687-01A-11D-2253-08 TCGA-HT-7687-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx e34b8386-87a8-421b-a6bd-508c451d5300 4172944b-df65-47bc-8567-9748e088836a CATCTACCAGGTCTTCTCTTG 0.587 11 182 UEVLD 55293 hgsc.bcm.edu;broad.mit.edu 37 11 18568522 18568522 + Missense_Mutation SNP T T A TCGA-HT-7687-01A-11D-2253-08 TCGA-HT-7687-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx e34b8386-87a8-421b-a6bd-508c451d5300 4172944b-df65-47bc-8567-9748e088836a CTGTACCACATCAAGGTACGA 0.458 10 112 OR4A16 81327 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 11 55111416 55111416 + Missense_Mutation SNP T T C TCGA-HT-7687-01A-11D-2253-08 TCGA-HT-7687-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx e34b8386-87a8-421b-a6bd-508c451d5300 4172944b-df65-47bc-8567-9748e088836a GTGGTTGCCCTCGTTTTTGTT 0.398 19 48 CUX2 23316 hgsc.bcm.edu;broad.mit.edu 37 12 111729277 111729277 + Silent SNP C C T TCGA-HT-7687-01A-11D-2253-08 TCGA-HT-7687-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx e34b8386-87a8-421b-a6bd-508c451d5300 4172944b-df65-47bc-8567-9748e088836a TGCAGCCCCCCAGCTTTGACC 0.617 8 125 PRKD1 5587 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 14 30105555 30105555 + Silent SNP G G A TCGA-HT-7687-01A-11D-2253-08 TCGA-HT-7687-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx e34b8386-87a8-421b-a6bd-508c451d5300 4172944b-df65-47bc-8567-9748e088836a CGCCACTGTCGTTCTGGCACT 0.542 118 224 NAGPA 51172 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 16 5081777 5081777 + Silent SNP T T C TCGA-HT-7687-01A-11D-2253-08 TCGA-HT-7687-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx e34b8386-87a8-421b-a6bd-508c451d5300 4172944b-df65-47bc-8567-9748e088836a ACTCTGTGGCTTGGCTCTCGT 0.572 184 270 PDP2 57546 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 16 66919576 66919576 + Silent SNP C C T TCGA-HT-7687-01A-11D-2253-08 TCGA-HT-7687-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx e34b8386-87a8-421b-a6bd-508c451d5300 4172944b-df65-47bc-8567-9748e088836a CCAGCGGGCTCCACGAGGCTG 0.617 9 12 MINK1 50488 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 17 4797498 4797498 + Silent SNP T T C TCGA-HT-7687-01A-11D-2253-08 TCGA-HT-7687-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx e34b8386-87a8-421b-a6bd-508c451d5300 4172944b-df65-47bc-8567-9748e088836a ACCTGCTGCATGCTGACAGCA 0.622 46 123 MYOM1 8736 hgsc.bcm.edu;broad.mit.edu 37 18 3135615 3135615 + Silent SNP G G A TCGA-HT-7687-01A-11D-2253-08 TCGA-HT-7687-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx e34b8386-87a8-421b-a6bd-508c451d5300 4172944b-df65-47bc-8567-9748e088836a AATTAGAACAGCGGACACGGA 0.512 3 58 GAREM 64762 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 18 29848207 29848207 + Missense_Mutation SNP T T C TCGA-HT-7687-01A-11D-2253-08 TCGA-HT-7687-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx e34b8386-87a8-421b-a6bd-508c451d5300 4172944b-df65-47bc-8567-9748e088836a CTTGGGGTCTTCCTCAGCACC 0.522 41 55 LRRC4B 94030 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 19 51022537 51022537 + Missense_Mutation SNP G G A TCGA-HT-7687-01A-11D-2253-08 TCGA-HT-7687-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx e34b8386-87a8-421b-a6bd-508c451d5300 4172944b-df65-47bc-8567-9748e088836a GTGGTCAGCCGGTTGTCAAAA 0.622 49 31 HIVEP3 59269 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 1 42050151 42050151 + Silent SNP C C T TCGA-HT-7687-01A-11D-2253-08 TCGA-HT-7687-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx e34b8386-87a8-421b-a6bd-508c451d5300 4172944b-df65-47bc-8567-9748e088836a GTTTGCCAGGCGACATGAATG 0.617 119 55 TNN 63923 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 1 175116175 175116175 + Missense_Mutation SNP C C T TCGA-HT-7687-01A-11D-2253-08 TCGA-HT-7687-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx e34b8386-87a8-421b-a6bd-508c451d5300 4172944b-df65-47bc-8567-9748e088836a CAGAAAGAAGCGGACGCTGAG 0.592 17 29 CACNA1S 779 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 1 201042735 201042735 + Missense_Mutation SNP G G A rs147112322 TCGA-HT-7687-01A-11D-2253-08 TCGA-HT-7687-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx e34b8386-87a8-421b-a6bd-508c451d5300 4172944b-df65-47bc-8567-9748e088836a CTTGGCCATCGTTGACTTCTC 0.542 69 653 OBSCN 84033 hgsc.bcm.edu;broad.mit.edu 37 1 228432192 228432192 + Missense_Mutation SNP C C A TCGA-HT-7687-01A-11D-2253-08 TCGA-HT-7687-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx e34b8386-87a8-421b-a6bd-508c451d5300 4172944b-df65-47bc-8567-9748e088836a CTGGTGCTGCCACAGGCGGGC 0.587 10 120 ZBTB18 10472 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 1 244218515 244218515 + Missense_Mutation SNP G G A TCGA-HT-7687-01A-11D-2253-08 TCGA-HT-7687-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx e34b8386-87a8-421b-a6bd-508c451d5300 4172944b-df65-47bc-8567-9748e088836a TGCAAGTGGTGCGAGCGCAGG 0.597 28 53 DEFB119 245932 hgsc.bcm.edu;broad.mit.edu 37 20 29976970 29976970 + Missense_Mutation SNP C C T TCGA-HT-7687-01A-11D-2253-08 TCGA-HT-7687-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx e34b8386-87a8-421b-a6bd-508c451d5300 4172944b-df65-47bc-8567-9748e088836a ATTTCGGCAGCGTATGATGCT 0.453 16 208 CSTF1 1477 hgsc.bcm.edu;broad.mit.edu 37 20 54974333 54974333 + Missense_Mutation SNP A A G TCGA-HT-7687-01A-11D-2253-08 TCGA-HT-7687-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx e34b8386-87a8-421b-a6bd-508c451d5300 4172944b-df65-47bc-8567-9748e088836a AAAAATTCTAAATACATTCTC 0.388 6 93 TIAM1 7074 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 21 32589897 32589897 + Missense_Mutation SNP T T C TCGA-HT-7687-01A-11D-2253-08 TCGA-HT-7687-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx e34b8386-87a8-421b-a6bd-508c451d5300 4172944b-df65-47bc-8567-9748e088836a TCCCTGCTTCTTTTTGGAGGT 0.522 98 120 MYT1L 23040 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 2 1926215 1926215 + Silent SNP C C T TCGA-HT-7687-01A-11D-2253-08 TCGA-HT-7687-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx e34b8386-87a8-421b-a6bd-508c451d5300 4172944b-df65-47bc-8567-9748e088836a TTGCTCTTTCCGTTTCCAAAG 0.547 80 128 C2orf43 0 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 2 21001131 21001131 + Missense_Mutation SNP C C G TCGA-HT-7687-01A-11D-2253-08 TCGA-HT-7687-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx e34b8386-87a8-421b-a6bd-508c451d5300 4172944b-df65-47bc-8567-9748e088836a AGAGGTCTGTCCAGGGCCCAC 0.423 52 106 IDH1 3417 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 2 209113112 209113112 + Missense_Mutation SNP C C T rs121913500 TCGA-HT-7687-01A-11D-2253-08 TCGA-HT-7687-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx e34b8386-87a8-421b-a6bd-508c451d5300 4172944b-df65-47bc-8567-9748e088836a ATAAGCATGACGACCTATGAT 0.393 66 92 CNTN3 5067 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 3 74383984 74383984 + Missense_Mutation SNP G G T TCGA-HT-7687-01A-11D-2253-08 TCGA-HT-7687-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx e34b8386-87a8-421b-a6bd-508c451d5300 4172944b-df65-47bc-8567-9748e088836a GGGTCATGTTGTACCTGGCAG 0.418 45 71 OR5K3 403277 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 3 98109669 98109669 + Missense_Mutation SNP C C T rs150899692 TCGA-HT-7687-01A-11D-2253-08 TCGA-HT-7687-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx e34b8386-87a8-421b-a6bd-508c451d5300 4172944b-df65-47bc-8567-9748e088836a TATAGAGCAACGTCTTCACAC 0.413 113 224 ANKRD17 26057 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 4 73942823 73942823 + Splice_Site SNP T T C TCGA-HT-7687-01A-11D-2253-08 TCGA-HT-7687-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx e34b8386-87a8-421b-a6bd-508c451d5300 4172944b-df65-47bc-8567-9748e088836a AGGCATACCCTTAAAAAAGGA 0.388 7 39 FCHSD1 89848 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 5 141023973 141023973 + Missense_Mutation SNP C C T TCGA-HT-7687-01A-11D-2253-08 TCGA-HT-7687-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx e34b8386-87a8-421b-a6bd-508c451d5300 4172944b-df65-47bc-8567-9748e088836a GCACTCTGTCCGGTGTAGCTG 0.622 23 30 CLINT1 9685 hgsc.bcm.edu;ucsc.edu 37 5 157241220 157241220 + Nonsense_Mutation SNP G G A TCGA-HT-7687-01A-11D-2253-08 TCGA-HT-7687-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx e34b8386-87a8-421b-a6bd-508c451d5300 4172944b-df65-47bc-8567-9748e088836a TCCAGGGATCGTAAATCATAA 0.388 4 39 HLA-DOA 3111 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 6 32975227 32975227 + Silent SNP C C T TCGA-HT-7687-01A-11D-2253-08 TCGA-HT-7687-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx e34b8386-87a8-421b-a6bd-508c451d5300 4172944b-df65-47bc-8567-9748e088836a TGGTCTGGGCCACTCCCTCAG 0.577 104 229 AHI1 54806 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 6 135787392 135787392 + Silent SNP G G A TCGA-HT-7687-01A-11D-2253-08 TCGA-HT-7687-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx e34b8386-87a8-421b-a6bd-508c451d5300 4172944b-df65-47bc-8567-9748e088836a CTAACTGTGTGTTCCTCAATT 0.393 94 108 PKD1L1 168507 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 7 47933628 47933628 + Missense_Mutation SNP C C G TCGA-HT-7687-01A-11D-2253-08 TCGA-HT-7687-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx e34b8386-87a8-421b-a6bd-508c451d5300 4172944b-df65-47bc-8567-9748e088836a ACAGTAGTTGCTGTACACCAC 0.572 41 83 MUC17 140453 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 7 100679973 100679973 + Missense_Mutation SNP C C T TCGA-HT-7687-01A-11D-2253-08 TCGA-HT-7687-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx e34b8386-87a8-421b-a6bd-508c451d5300 4172944b-df65-47bc-8567-9748e088836a GTCAGCACCACGCCGGTACTC 0.502 270 446 AK8 158067 hgsc.bcm.edu;broad.mit.edu 37 9 135730311 135730311 + Splice_Site SNP G G A TCGA-HT-7687-01A-11D-2253-08 TCGA-HT-7687-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx e34b8386-87a8-421b-a6bd-508c451d5300 4172944b-df65-47bc-8567-9748e088836a GCTGGGAACTGTCTGAAGGAA 0.567 4 73 RALGDS 5900 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 9 135979652 135979652 + Missense_Mutation SNP T T C TCGA-HT-7687-01A-11D-2253-08 TCGA-HT-7687-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx e34b8386-87a8-421b-a6bd-508c451d5300 4172944b-df65-47bc-8567-9748e088836a ACTCTCACCGTCTCCTTCGGC 0.657 33 42 IL13RA1 3597 hgsc.bcm.edu;broad.mit.edu 37 X 117900529 117900529 + Missense_Mutation SNP A A G TCGA-HT-7687-01A-11D-2253-08 TCGA-HT-7687-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx e34b8386-87a8-421b-a6bd-508c451d5300 4172944b-df65-47bc-8567-9748e088836a AGAATTTGAGAGAAATGTGGA 0.338 6 71 SH3GL2 6456 broad.mit.edu;ucsc.edu 37 9 17795580 17795580 + Missense_Mutation SNP G G A rs139383722 TCGA-HT-7687-01A-11D-2253-08 TCGA-HT-7687-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx e34b8386-87a8-421b-a6bd-508c451d5300 4172944b-df65-47bc-8567-9748e088836a AGCTCTGTACGACTTTGAACC 0.463 29 43 OPN5 221391 broad.mit.edu;ucsc.edu 37 6 47775993 47775993 + Missense_Mutation SNP T T A TCGA-HT-7687-01A-11D-2253-08 TCGA-HT-7687-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx e34b8386-87a8-421b-a6bd-508c451d5300 4172944b-df65-47bc-8567-9748e088836a CCCATACAGCTCTCTGTGGTG 0.463 66 128 hsa-mir-7162 0 broad.mit.edu;ucsc.edu 37 15 62539227 62539227 + RNA SNP C C T TCGA-HT-7687-01A-11D-2253-08 TCGA-HT-7687-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx e34b8386-87a8-421b-a6bd-508c451d5300 4172944b-df65-47bc-8567-9748e088836a AGCTTACCCACCTGGTTCCTT 0.577 8 54 PCDHB17 54661 broad.mit.edu;ucsc.edu 37 5 140537080 140537080 + Missense_Mutation SNP G G T TCGA-HT-7687-01A-11D-2253-08 TCGA-HT-7687-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx e34b8386-87a8-421b-a6bd-508c451d5300 4172944b-df65-47bc-8567-9748e088836a CCTGCCCCTCGCCTCCCTGGT 0.652 108 197 ZNF292 23036 broad.mit.edu;hgsc.bcm.edu 37 6 87968456 87968457 + Frame_Shift_Del DEL AG AG - TCGA-HT-7687-01A-11D-2253-08 TCGA-HT-7687-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx e34b8386-87a8-421b-a6bd-508c451d5300 4172944b-df65-47bc-8567-9748e088836a CTGATGTAAAAGAGAATTTCAA 0.327 12 31 OR2A14 135941 broad.mit.edu;hgsc.bcm.edu 37 7 143826799 143826799 + Frame_Shift_Del DEL C C - TCGA-HT-7687-01A-11D-2253-08 TCGA-HT-7687-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx e34b8386-87a8-421b-a6bd-508c451d5300 4172944b-df65-47bc-8567-9748e088836a AGGTGGTCATCTTTGCAGCCT 0.577 184 243 DDX5 1655 broad.mit.edu;hgsc.bcm.edu 37 17 62500099 62500102 + Splice_Site DEL ACAG ACAG - TCGA-HT-7687-01A-11D-2253-08 TCGA-HT-7687-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx e34b8386-87a8-421b-a6bd-508c451d5300 4172944b-df65-47bc-8567-9748e088836a TCCCAAACTTACAGACAATGTTTT 0.397 118 244