Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_file Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID ref_context gc_content t_alt_count t_ref_count MYO3A 53904 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 10 26463288 26463288 + Missense_Mutation SNP G G T TCGA-HT-7688-01A-11D-2253-08 TCGA-HT-7688-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx 35602eec-d9a6-4b1f-b4bf-0304d6f0337a b1e48d0a-6c17-45b0-856c-58b9eba686c8 GAAGGCAGCAGTTGAGGAAGG 0.438 21 118 CYP2C19 1557 hgsc.bcm.edu;broad.mit.edu 37 10 96535297 96535297 + Splice_Site SNP G G C rs77576043 TCGA-HT-7688-01A-11D-2253-08 TCGA-HT-7688-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx 35602eec-d9a6-4b1f-b4bf-0304d6f0337a b1e48d0a-6c17-45b0-856c-58b9eba686c8 AAAACCAAGGGTGGGTGAACA 0.498 11 184 WDR96 80217 hgsc.bcm.edu;broad.mit.edu 37 10 105990460 105990460 + Silent SNP G G A TCGA-HT-7688-01A-11D-2253-08 TCGA-HT-7688-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx 35602eec-d9a6-4b1f-b4bf-0304d6f0337a b1e48d0a-6c17-45b0-856c-58b9eba686c8 TTGCCATGACGCCCACAATTC 0.408 5 87 DCHS1 8642 hgsc.bcm.edu;broad.mit.edu 37 11 6645159 6645159 + Missense_Mutation SNP C C G TCGA-HT-7688-01A-11D-2253-08 TCGA-HT-7688-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx 35602eec-d9a6-4b1f-b4bf-0304d6f0337a b1e48d0a-6c17-45b0-856c-58b9eba686c8 CACGACTGAGCTTTGGGGTGG 0.537 10 185 DCHS1 8642 hgsc.bcm.edu;broad.mit.edu 37 11 6645181 6645181 + Missense_Mutation SNP C C G TCGA-HT-7688-01A-11D-2253-08 TCGA-HT-7688-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx 35602eec-d9a6-4b1f-b4bf-0304d6f0337a b1e48d0a-6c17-45b0-856c-58b9eba686c8 TGCCCACGGTCAGCTGCAGCC 0.562 6 119 RPUSD4 84881 hgsc.bcm.edu;broad.mit.edu 37 11 126075477 126075477 + Missense_Mutation SNP C C T rs143531642 TCGA-HT-7688-01A-11D-2253-08 TCGA-HT-7688-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx 35602eec-d9a6-4b1f-b4bf-0304d6f0337a b1e48d0a-6c17-45b0-856c-58b9eba686c8 ATTTTCCCATCGTCCATGCGG 0.557 9 121 CUL4A 8451 hgsc.bcm.edu;broad.mit.edu 37 13 113891149 113891149 + Silent SNP T T C TCGA-HT-7688-01A-11D-2253-08 TCGA-HT-7688-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx 35602eec-d9a6-4b1f-b4bf-0304d6f0337a b1e48d0a-6c17-45b0-856c-58b9eba686c8 AACCACTGATTGCTTGTGTGG 0.358 4 70 SUPT16H 11198 hgsc.bcm.edu;broad.mit.edu 37 14 21838616 21838616 + Missense_Mutation SNP A A G TCGA-HT-7688-01A-11D-2253-08 TCGA-HT-7688-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx 35602eec-d9a6-4b1f-b4bf-0304d6f0337a b1e48d0a-6c17-45b0-856c-58b9eba686c8 GGCTTCAATCATTTTGTCAAA 0.383 4 62 CHD8 57680 hgsc.bcm.edu;broad.mit.edu 37 14 21861840 21861840 + Silent SNP T T G TCGA-HT-7688-01A-11D-2253-08 TCGA-HT-7688-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx 35602eec-d9a6-4b1f-b4bf-0304d6f0337a b1e48d0a-6c17-45b0-856c-58b9eba686c8 CATAGTCTTGTGGGGTTGGTC 0.547 5 60 TRIM9 114088 hgsc.bcm.edu;broad.mit.edu 37 14 51446210 51446210 + Silent SNP T T C TCGA-HT-7688-01A-11D-2253-08 TCGA-HT-7688-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx 35602eec-d9a6-4b1f-b4bf-0304d6f0337a b1e48d0a-6c17-45b0-856c-58b9eba686c8 TCAAGTTTTTTCTATTTAAGT 0.453 13 222 GATM 2628 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 15 45658331 45658331 + Silent SNP T T C TCGA-HT-7688-01A-11D-2253-08 TCGA-HT-7688-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx 35602eec-d9a6-4b1f-b4bf-0304d6f0337a b1e48d0a-6c17-45b0-856c-58b9eba686c8 GATTGGGATCTTTAAAGGAGA 0.428 23 68 SEMA6D 80031 hgsc.bcm.edu;broad.mit.edu 37 15 48052514 48052514 + Nonsense_Mutation SNP T T A TCGA-HT-7688-01A-11D-2253-08 TCGA-HT-7688-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx 35602eec-d9a6-4b1f-b4bf-0304d6f0337a b1e48d0a-6c17-45b0-856c-58b9eba686c8 CAAGGCAATATCCGGTTTTTA 0.418 3 59 PDE8A 5151 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 15 85619979 85619979 + Missense_Mutation SNP G G C TCGA-HT-7688-01A-11D-2253-08 TCGA-HT-7688-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx 35602eec-d9a6-4b1f-b4bf-0304d6f0337a b1e48d0a-6c17-45b0-856c-58b9eba686c8 ATAGAGAAGAGTTGTCCGTAA 0.294 14 150 TP53 7157 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 17 7578394 7578394 + Missense_Mutation SNP T T C TCGA-HT-7688-01A-11D-2253-08 TCGA-HT-7688-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx 35602eec-d9a6-4b1f-b4bf-0304d6f0337a b1e48d0a-6c17-45b0-856c-58b9eba686c8 GCAGCGCTCATGGTGGGGGCA 0.642 65 50 ZNF207 7756 hgsc.bcm.edu;broad.mit.edu 37 17 30696691 30696691 + Silent SNP G G A TCGA-HT-7688-01A-11D-2253-08 TCGA-HT-7688-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx 35602eec-d9a6-4b1f-b4bf-0304d6f0337a b1e48d0a-6c17-45b0-856c-58b9eba686c8 GGCAGGGACCGCCAATGGTGC 0.527 7 65 CCR7 1236 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 17 38715155 38715155 + Missense_Mutation SNP A A G TCGA-HT-7688-01A-11D-2253-08 TCGA-HT-7688-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx 35602eec-d9a6-4b1f-b4bf-0304d6f0337a b1e48d0a-6c17-45b0-856c-58b9eba686c8 CTGGAAAATGACAAGGAGAGC 0.498 7 61 C17orf47 0 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 17 56620229 56620229 + Missense_Mutation SNP C C T TCGA-HT-7688-01A-11D-2253-08 TCGA-HT-7688-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx 35602eec-d9a6-4b1f-b4bf-0304d6f0337a b1e48d0a-6c17-45b0-856c-58b9eba686c8 TGTCAGCTGGCTTTGGGGTGT 0.507 48 89 ABCA6 23460 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 17 67080574 67080574 + Splice_Site SNP T T C TCGA-HT-7688-01A-11D-2253-08 TCGA-HT-7688-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx 35602eec-d9a6-4b1f-b4bf-0304d6f0337a b1e48d0a-6c17-45b0-856c-58b9eba686c8 CGCACGTACCTTTCTCGTGAT 0.453 159 387 SLC26A11 284129 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 17 78199637 78199637 + Splice_Site SNP A A G TCGA-HT-7688-01A-11D-2253-08 TCGA-HT-7688-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx 35602eec-d9a6-4b1f-b4bf-0304d6f0337a b1e48d0a-6c17-45b0-856c-58b9eba686c8 TTTGGACAGAACCTGCTGGGA 0.587 26 163 ASXL3 80816 hgsc.bcm.edu;broad.mit.edu 37 18 31325552 31325552 + Missense_Mutation SNP G G C TCGA-HT-7688-01A-11D-2253-08 TCGA-HT-7688-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx 35602eec-d9a6-4b1f-b4bf-0304d6f0337a b1e48d0a-6c17-45b0-856c-58b9eba686c8 ATTTCATGTTGACAAGAATGG 0.532 5 116 MC4R 4160 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 18 58038877 58038877 + Missense_Mutation SNP G G A TCGA-HT-7688-01A-11D-2253-08 TCGA-HT-7688-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx 35602eec-d9a6-4b1f-b4bf-0304d6f0337a b1e48d0a-6c17-45b0-856c-58b9eba686c8 GCACCTTGGCGGATGGCACCA 0.517 11 61 KRI1 65095 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 19 10671046 10671046 + Missense_Mutation SNP G G A TCGA-HT-7688-01A-11D-2253-08 TCGA-HT-7688-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx 35602eec-d9a6-4b1f-b4bf-0304d6f0337a b1e48d0a-6c17-45b0-856c-58b9eba686c8 tcctcATAGCGTTTGTTGAGG 0.552 7 57 CYP4F22 126410 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 19 15651449 15651449 + Missense_Mutation SNP G G A rs146265982 TCGA-HT-7688-01A-11D-2253-08 TCGA-HT-7688-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx 35602eec-d9a6-4b1f-b4bf-0304d6f0337a b1e48d0a-6c17-45b0-856c-58b9eba686c8 CGGGCACTGCGTCAGCAGGGG 0.632 25 80 NPHS1 4868 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 19 36340183 36340183 + Silent SNP G G A TCGA-HT-7688-01A-11D-2253-08 TCGA-HT-7688-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx 35602eec-d9a6-4b1f-b4bf-0304d6f0337a b1e48d0a-6c17-45b0-856c-58b9eba686c8 CTCGGGCCACGCACGGCAGCT 0.657 14 31 SIPA1L3 23094 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 19 38643516 38643516 + Silent SNP T T C TCGA-HT-7688-01A-11D-2253-08 TCGA-HT-7688-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx 35602eec-d9a6-4b1f-b4bf-0304d6f0337a b1e48d0a-6c17-45b0-856c-58b9eba686c8 TATCTCTTGATCCCCACTTCA 0.617 47 202 ZNF17 7565 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 19 57932608 57932608 + Missense_Mutation SNP A A G TCGA-HT-7688-01A-11D-2253-08 TCGA-HT-7688-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx 35602eec-d9a6-4b1f-b4bf-0304d6f0337a b1e48d0a-6c17-45b0-856c-58b9eba686c8 AGAACTTACAAATGCAGCAAA 0.428 10 36 TAS1R2 80834 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 1 19181078 19181078 + Missense_Mutation SNP C C T TCGA-HT-7688-01A-11D-2253-08 TCGA-HT-7688-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx 35602eec-d9a6-4b1f-b4bf-0304d6f0337a b1e48d0a-6c17-45b0-856c-58b9eba686c8 ATCCACACGGCGCCAGTGAAG 0.637 15 54 SNRNP40 9410 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 1 31744294 31744294 + Missense_Mutation SNP T T C TCGA-HT-7688-01A-11D-2253-08 TCGA-HT-7688-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx 35602eec-d9a6-4b1f-b4bf-0304d6f0337a b1e48d0a-6c17-45b0-856c-58b9eba686c8 AGTCACTGAATCTGCATGGCC 0.448 7 63 RLF 6018 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 1 40702367 40702367 + Missense_Mutation SNP C C G TCGA-HT-7688-01A-11D-2253-08 TCGA-HT-7688-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx 35602eec-d9a6-4b1f-b4bf-0304d6f0337a b1e48d0a-6c17-45b0-856c-58b9eba686c8 AGATTGCCACCTGCAAGACAG 0.418 51 111 AGL 178 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 1 100353559 100353559 + Missense_Mutation SNP G G A TCGA-HT-7688-01A-11D-2253-08 TCGA-HT-7688-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx 35602eec-d9a6-4b1f-b4bf-0304d6f0337a b1e48d0a-6c17-45b0-856c-58b9eba686c8 AACTTTGGCTGAGCTAAATCA 0.373 6 57 SYCP1 6847 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 1 115487052 115487052 + Missense_Mutation SNP A A G TCGA-HT-7688-01A-11D-2253-08 TCGA-HT-7688-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx 35602eec-d9a6-4b1f-b4bf-0304d6f0337a b1e48d0a-6c17-45b0-856c-58b9eba686c8 ACAAAAAGATATCAGAAGAAA 0.279 4 31 CD1E 913 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 1 158325321 158325321 + Missense_Mutation SNP G G A rs142840776 TCGA-HT-7688-01A-11D-2253-08 TCGA-HT-7688-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx 35602eec-d9a6-4b1f-b4bf-0304d6f0337a b1e48d0a-6c17-45b0-856c-58b9eba686c8 TTTCTAGCGGGGCTCATGGAA 0.473 7 48 SCYL3 57147 hgsc.bcm.edu;broad.mit.edu 37 1 169823532 169823532 + Missense_Mutation SNP A A G TCGA-HT-7688-01A-11D-2253-08 TCGA-HT-7688-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx 35602eec-d9a6-4b1f-b4bf-0304d6f0337a b1e48d0a-6c17-45b0-856c-58b9eba686c8 AGAAGGCTTAATTTCTGGGAT 0.393 7 121 MROH9 80133 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 1 170928725 170928725 + Missense_Mutation SNP T T C TCGA-HT-7688-01A-11D-2253-08 TCGA-HT-7688-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx 35602eec-d9a6-4b1f-b4bf-0304d6f0337a b1e48d0a-6c17-45b0-856c-58b9eba686c8 TATGAGTACATTGAGGACATG 0.363 8 55 OR2M7 391196 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 1 248486965 248486965 + Missense_Mutation SNP C C A TCGA-HT-7688-01A-11D-2253-08 TCGA-HT-7688-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx 35602eec-d9a6-4b1f-b4bf-0304d6f0337a b1e48d0a-6c17-45b0-856c-58b9eba686c8 CTAAGATTTTCATTAATGCTC 0.403 8 71 TGM6 343641 hgsc.bcm.edu;broad.mit.edu 37 20 2411182 2411182 + Missense_Mutation SNP T T C TCGA-HT-7688-01A-11D-2253-08 TCGA-HT-7688-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx 35602eec-d9a6-4b1f-b4bf-0304d6f0337a b1e48d0a-6c17-45b0-856c-58b9eba686c8 ATGTGCCTTGTCACCAAAGGA 0.458 4 63 TPX2 22974 hgsc.bcm.edu;broad.mit.edu 37 20 30388772 30388772 + Splice_Site SNP G G C TCGA-HT-7688-01A-11D-2253-08 TCGA-HT-7688-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx 35602eec-d9a6-4b1f-b4bf-0304d6f0337a b1e48d0a-6c17-45b0-856c-58b9eba686c8 TTACTTTGCAGGTGCATAAGG 0.398 10 166 EIF2AK3 9451 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 2 88913303 88913303 + Missense_Mutation SNP T T C TCGA-HT-7688-01A-11D-2253-08 TCGA-HT-7688-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx 35602eec-d9a6-4b1f-b4bf-0304d6f0337a b1e48d0a-6c17-45b0-856c-58b9eba686c8 ATCCCACTGCTTTTTACCATG 0.353 10 137 PTPN4 5775 hgsc.bcm.edu;broad.mit.edu 37 2 120709680 120709680 + Silent SNP A A G TCGA-HT-7688-01A-11D-2253-08 TCGA-HT-7688-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx 35602eec-d9a6-4b1f-b4bf-0304d6f0337a b1e48d0a-6c17-45b0-856c-58b9eba686c8 ATTCTGGGGAACTCATGCTTC 0.403 7 117 TTN 7273 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 2 179463964 179463964 + Silent SNP G G A TCGA-HT-7688-01A-11D-2253-08 TCGA-HT-7688-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx 35602eec-d9a6-4b1f-b4bf-0304d6f0337a b1e48d0a-6c17-45b0-856c-58b9eba686c8 CATATTCATGGCCTTCTAGCA 0.428 29 137 IDH1 3417 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 2 209113112 209113112 + Missense_Mutation SNP C C T rs121913500 TCGA-HT-7688-01A-11D-2253-08 TCGA-HT-7688-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx 35602eec-d9a6-4b1f-b4bf-0304d6f0337a b1e48d0a-6c17-45b0-856c-58b9eba686c8 ATAAGCATGACGACCTATGAT 0.393 26 73 NEK4 6787 hgsc.bcm.edu;broad.mit.edu 37 3 52802575 52802575 + Missense_Mutation SNP G G A TCGA-HT-7688-01A-11D-2253-08 TCGA-HT-7688-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx 35602eec-d9a6-4b1f-b4bf-0304d6f0337a b1e48d0a-6c17-45b0-856c-58b9eba686c8 GCAGCTCGCCGCTCTCGGCTA 0.453 7 127 CWH43 80157 hgsc.bcm.edu;broad.mit.edu 37 4 49000535 49000535 + Missense_Mutation SNP C C G TCGA-HT-7688-01A-11D-2253-08 TCGA-HT-7688-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx 35602eec-d9a6-4b1f-b4bf-0304d6f0337a b1e48d0a-6c17-45b0-856c-58b9eba686c8 TTTGTGGTTTCGTGGTACTGG 0.443 11 152 KDR 3791 hgsc.bcm.edu;broad.mit.edu 37 4 55981079 55981079 + Missense_Mutation SNP T T C TCGA-HT-7688-01A-11D-2253-08 TCGA-HT-7688-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx 35602eec-d9a6-4b1f-b4bf-0304d6f0337a b1e48d0a-6c17-45b0-856c-58b9eba686c8 CTGGTAACTTTCATCATTAAT 0.373 4 58 DNAH5 1767 hgsc.bcm.edu;broad.mit.edu 37 5 13792273 13792273 + Missense_Mutation SNP T T C TCGA-HT-7688-01A-11D-2253-08 TCGA-HT-7688-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx 35602eec-d9a6-4b1f-b4bf-0304d6f0337a b1e48d0a-6c17-45b0-856c-58b9eba686c8 ACAGAATCTCTCACTTCTTCT 0.423 4 70 PDZD2 23037 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 5 32090257 32090257 + Missense_Mutation SNP C C T rs147353592 TCGA-HT-7688-01A-11D-2253-08 TCGA-HT-7688-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx 35602eec-d9a6-4b1f-b4bf-0304d6f0337a b1e48d0a-6c17-45b0-856c-58b9eba686c8 CCATTTTGGACGGGAGGGTCA 0.632 48 491 MAP1B 4131 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 5 71493611 71493611 + Missense_Mutation SNP A A G TCGA-HT-7688-01A-11D-2253-08 TCGA-HT-7688-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx 35602eec-d9a6-4b1f-b4bf-0304d6f0337a b1e48d0a-6c17-45b0-856c-58b9eba686c8 CCAAGAAAAGAAAACTGATGA 0.403 16 36 AQPEP 206338 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 5 115298645 115298645 + Silent SNP C C T TCGA-HT-7688-01A-11D-2253-08 TCGA-HT-7688-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx 35602eec-d9a6-4b1f-b4bf-0304d6f0337a b1e48d0a-6c17-45b0-856c-58b9eba686c8 CGATCTGGAGCTGTGGCCGCA 0.701 24 97 FOXQ1 94234 hgsc.bcm.edu;broad.mit.edu 37 6 1313391 1313391 + Missense_Mutation SNP G G A TCGA-HT-7688-01A-11D-2253-08 TCGA-HT-7688-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx 35602eec-d9a6-4b1f-b4bf-0304d6f0337a b1e48d0a-6c17-45b0-856c-58b9eba686c8 TACCTCATGGGCAAGTTCCCC 0.652 4 78 TREML2 79865 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 6 41160191 41160191 + Missense_Mutation SNP G G A TCGA-HT-7688-01A-11D-2253-08 TCGA-HT-7688-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx 35602eec-d9a6-4b1f-b4bf-0304d6f0337a b1e48d0a-6c17-45b0-856c-58b9eba686c8 TCCACATAGGGCTCTGGTCTT 0.587 7 46 PRDM1 639 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 6 106553291 106553291 + Missense_Mutation SNP G G A TCGA-HT-7688-01A-11D-2253-08 TCGA-HT-7688-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx 35602eec-d9a6-4b1f-b4bf-0304d6f0337a b1e48d0a-6c17-45b0-856c-58b9eba686c8 CCCCCCTACGGCATGAATTGT 0.587 10 65 IL6 3569 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 7 22769188 22769188 + Missense_Mutation SNP A A T TCGA-HT-7688-01A-11D-2253-08 TCGA-HT-7688-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx 35602eec-d9a6-4b1f-b4bf-0304d6f0337a b1e48d0a-6c17-45b0-856c-58b9eba686c8 GTATACCTAGAGTACCTCCAG 0.458 11 72 GRB10 2887 hgsc.bcm.edu;broad.mit.edu 37 7 50686969 50686969 + Silent SNP T T C TCGA-HT-7688-01A-11D-2253-08 TCGA-HT-7688-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx 35602eec-d9a6-4b1f-b4bf-0304d6f0337a b1e48d0a-6c17-45b0-856c-58b9eba686c8 GCTCATGGTCTTCCAAGCACC 0.443 6 123 INTS9 55756 hgsc.bcm.edu;broad.mit.edu 37 8 28625815 28625815 + Missense_Mutation SNP C C G TCGA-HT-7688-01A-11D-2253-08 TCGA-HT-7688-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx 35602eec-d9a6-4b1f-b4bf-0304d6f0337a b1e48d0a-6c17-45b0-856c-58b9eba686c8 GCTGTGTCCTCCACCTTAATA 0.502 11 196 TG 7038 hgsc.bcm.edu;broad.mit.edu 37 8 133912511 133912511 + Silent SNP G G A TCGA-HT-7688-01A-11D-2253-08 TCGA-HT-7688-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx 35602eec-d9a6-4b1f-b4bf-0304d6f0337a b1e48d0a-6c17-45b0-856c-58b9eba686c8 TGCAGGCATCGGGGGCTGGCA 0.622 5 58 RORB 6096 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 9 77257632 77257632 + Nonsense_Mutation SNP C C T TCGA-HT-7688-01A-11D-2253-08 TCGA-HT-7688-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx 35602eec-d9a6-4b1f-b4bf-0304d6f0337a b1e48d0a-6c17-45b0-856c-58b9eba686c8 ACAGATAAAGCAAGAACCTAT 0.468 11 68 MSL3 10943 hgsc.bcm.edu;ucsc.edu 37 X 11783854 11783854 + Missense_Mutation SNP T T C TCGA-HT-7688-01A-11D-2253-08 TCGA-HT-7688-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx 35602eec-d9a6-4b1f-b4bf-0304d6f0337a b1e48d0a-6c17-45b0-856c-58b9eba686c8 AAAGAGTAGGTTCATTCTCGG 0.587 25 136 FMR1NB 158521 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 X 147084823 147084823 + Missense_Mutation SNP A A G TCGA-HT-7688-01A-11D-2253-08 TCGA-HT-7688-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx 35602eec-d9a6-4b1f-b4bf-0304d6f0337a b1e48d0a-6c17-45b0-856c-58b9eba686c8 GCTTTGCTGAATTTTTTCTTT 0.373 7 23 UTY 7404 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 Y 15522901 15522901 + Missense_Mutation SNP A A G TCGA-HT-7688-01A-11D-2253-08 TCGA-HT-7688-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx 35602eec-d9a6-4b1f-b4bf-0304d6f0337a b1e48d0a-6c17-45b0-856c-58b9eba686c8 GTCTGTGTTCACTTTGAACAT 0.413 22 37 TMEM175 84286 broad.mit.edu;ucsc.edu 37 4 944293 944293 + Missense_Mutation SNP G G C TCGA-HT-7688-01A-11D-2253-08 TCGA-HT-7688-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx 35602eec-d9a6-4b1f-b4bf-0304d6f0337a b1e48d0a-6c17-45b0-856c-58b9eba686c8 AGTGGCCTGGGCAGCACACAC 0.597 11 106 MKI67 4288 broad.mit.edu;ucsc.edu 37 10 129923863 129923863 + Missense_Mutation SNP G G C TCGA-HT-7688-01A-11D-2253-08 TCGA-HT-7688-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx 35602eec-d9a6-4b1f-b4bf-0304d6f0337a b1e48d0a-6c17-45b0-856c-58b9eba686c8 AGGTGCTGAGGCTCAGGGGAA 0.517 14 122 MBL2 4153 broad.mit.edu;ucsc.edu 37 10 54531233 54531233 + Missense_Mutation SNP T T C TCGA-HT-7688-01A-11D-2253-08 TCGA-HT-7688-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx 35602eec-d9a6-4b1f-b4bf-0304d6f0337a b1e48d0a-6c17-45b0-856c-58b9eba686c8 TCTCCCTTGGTGCCATCACGC 0.537 11 93 HOXC4 3221 broad.mit.edu;ucsc.edu 37 12 54447735 54447735 + Missense_Mutation SNP C C G TCGA-HT-7688-01A-11D-2253-08 TCGA-HT-7688-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx 35602eec-d9a6-4b1f-b4bf-0304d6f0337a b1e48d0a-6c17-45b0-856c-58b9eba686c8 TTGATGGACTCTAACTACATC 0.423 10 76 ARID1A 8289 broad.mit.edu;hgsc.bcm.edu 37 1 27100176 27100176 + Frame_Shift_Del DEL C C - TCGA-HT-7688-01A-11D-2253-08 TCGA-HT-7688-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx 35602eec-d9a6-4b1f-b4bf-0304d6f0337a b1e48d0a-6c17-45b0-856c-58b9eba686c8 CTAGCCGCTACCCCCCgcagc 0.597 23 129 CAD 790 broad.mit.edu;hgsc.bcm.edu 37 2 27462334 27462334 + Frame_Shift_Del DEL G G - TCGA-HT-7688-01A-11D-2253-08 TCGA-HT-7688-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx 35602eec-d9a6-4b1f-b4bf-0304d6f0337a b1e48d0a-6c17-45b0-856c-58b9eba686c8 CTATATCGATGGGCAGGTACG 0.567 25 69 FBN2 2201 broad.mit.edu;hgsc.bcm.edu 37 5 127782200 127782203 + Frame_Shift_Del DEL TGTT TGTT - TCGA-HT-7688-01A-11D-2253-08 TCGA-HT-7688-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx 35602eec-d9a6-4b1f-b4bf-0304d6f0337a b1e48d0a-6c17-45b0-856c-58b9eba686c8 AGTTTCACTCTGTTTGTGACCAGC 0.426 16 75 EPB41L2 2037 broad.mit.edu;hgsc.bcm.edu 37 6 131229973 131229976 + Frame_Shift_Del DEL TCTT TCTT - TCGA-HT-7688-01A-11D-2253-08 TCGA-HT-7688-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx 35602eec-d9a6-4b1f-b4bf-0304d6f0337a b1e48d0a-6c17-45b0-856c-58b9eba686c8 CTCAGTTGTCTCTTTATTTCTTTA 0.284 16 38 NCOA4 8031 broad.mit.edu;hgsc.bcm.edu 37 10 51585027 51585029 + In_Frame_Del DEL AAG AAG - TCGA-HT-7688-01A-11D-2253-08 TCGA-HT-7688-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx 35602eec-d9a6-4b1f-b4bf-0304d6f0337a b1e48d0a-6c17-45b0-856c-58b9eba686c8 CTTGGAGGCCAAGAAACCATTGT 0.522 13 22 ARID5B 84159 broad.mit.edu;hgsc.bcm.edu 37 10 63845531 63845531 + Frame_Shift_Del DEL A A - TCGA-HT-7688-01A-11D-2253-08 TCGA-HT-7688-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx 35602eec-d9a6-4b1f-b4bf-0304d6f0337a b1e48d0a-6c17-45b0-856c-58b9eba686c8 CAAACCTCGGAAACAGGAGAA 0.358 58 91 CDON 50937 broad.mit.edu;hgsc.bcm.edu 37 11 125891236 125891237 + Frame_Shift_Del DEL AA AA - TCGA-HT-7688-01A-11D-2253-08 TCGA-HT-7688-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx 35602eec-d9a6-4b1f-b4bf-0304d6f0337a b1e48d0a-6c17-45b0-856c-58b9eba686c8 GAGTTGAGAGAAAGAATTGTCA 0.475 19 73 PTPRR 5801 broad.mit.edu;hgsc.bcm.edu 37 12 71050530 71050532 + In_Frame_Del DEL CTT CTT - TCGA-HT-7688-01A-11D-2253-08 TCGA-HT-7688-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx 35602eec-d9a6-4b1f-b4bf-0304d6f0337a b1e48d0a-6c17-45b0-856c-58b9eba686c8 TCCACAACTCCTTCTTCTTTCAG 0.433 43 159 C14orf37 0 broad.mit.edu;hgsc.bcm.edu 37 14 58605972 58605974 + In_Frame_Del DEL CCT CCT - TCGA-HT-7688-01A-11D-2253-08 TCGA-HT-7688-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx 35602eec-d9a6-4b1f-b4bf-0304d6f0337a b1e48d0a-6c17-45b0-856c-58b9eba686c8 GTGCTATCTCCCTCCTCCTTTCT 0.478 36 110 SMARCA4 6597 broad.mit.edu;hgsc.bcm.edu 37 19 11106926 11106928 + In_Frame_Del DEL AGA AGA - TCGA-HT-7688-01A-11D-2253-08 TCGA-HT-7688-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx 35602eec-d9a6-4b1f-b4bf-0304d6f0337a b1e48d0a-6c17-45b0-856c-58b9eba686c8 CTCATCGACCAGAAGAAGGACAA 0.576 29 145 ATRX 546 broad.mit.edu 37 X 76875860 76875861 + Splice_Site DEL CA CA - TCGA-HT-7688-01A-11D-2253-08 TCGA-HT-7688-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx 35602eec-d9a6-4b1f-b4bf-0304d6f0337a b1e48d0a-6c17-45b0-856c-58b9eba686c8 GATATTAACTCACACTCAATTA 0.317 9 34