Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	ref_context	gc_content	t_alt_count	t_ref_count
SLIT1	6585	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	10	98819232	98819232	+	Missense_Mutation	SNP	C	C	T			TCGA-HT-7690-01A-11D-2253-08	TCGA-HT-7690-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	8c74b94d-14f8-4e14-a9ec-da0a310c2da0	1edb908b-2481-4655-bdfc-34ebeba029ae	GTTCAGGGAGCGGAGGCCCTG	0.622	26	75
ABCC11	85320	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	16	48211013	48211013	+	Silent	SNP	C	C	T			TCGA-HT-7690-01A-11D-2253-08	TCGA-HT-7690-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	8c74b94d-14f8-4e14-a9ec-da0a310c2da0	1edb908b-2481-4655-bdfc-34ebeba029ae	AAGGAGCTTCCGAGACACACA	0.483	18	34
TP53	7157	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	17	7577574	7577574	+	Missense_Mutation	SNP	T	T	C			TCGA-HT-7690-01A-11D-2253-08	TCGA-HT-7690-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	8c74b94d-14f8-4e14-a9ec-da0a310c2da0	1edb908b-2481-4655-bdfc-34ebeba029ae	GTTACACATGTAGTTGTAGTG	0.572	90	26
RNF43	54894	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	17	56435582	56435582	+	Nonsense_Mutation	SNP	G	G	A			TCGA-HT-7690-01A-11D-2253-08	TCGA-HT-7690-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	8c74b94d-14f8-4e14-a9ec-da0a310c2da0	1edb908b-2481-4655-bdfc-34ebeba029ae	ATGTCCACTCGCTGGGGATCC	0.592	80	91
MARCH10	162333	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	17	60879010	60879010	+	Silent	SNP	A	A	G			TCGA-HT-7690-01A-11D-2253-08	TCGA-HT-7690-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	8c74b94d-14f8-4e14-a9ec-da0a310c2da0	1edb908b-2481-4655-bdfc-34ebeba029ae	CAATTACCTGATACTCAGAGT	0.428	22	173
MOB3A	126308	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	19	2076843	2076843	+	Silent	SNP	G	G	A			TCGA-HT-7690-01A-11D-2253-08	TCGA-HT-7690-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	8c74b94d-14f8-4e14-a9ec-da0a310c2da0	1edb908b-2481-4655-bdfc-34ebeba029ae	CGATGAGGCCGAACTCCTTGA	0.622	32	39
MATK	4145	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	19	3779721	3779721	+	Missense_Mutation	SNP	A	A	C			TCGA-HT-7690-01A-11D-2253-08	TCGA-HT-7690-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	8c74b94d-14f8-4e14-a9ec-da0a310c2da0	1edb908b-2481-4655-bdfc-34ebeba029ae	TCGTCCAGGAAGGCCTGGGCT	0.687	47	74
SLC30A2	7780	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	1	26371545	26371545	+	Missense_Mutation	SNP	G	G	A			TCGA-HT-7690-01A-11D-2253-08	TCGA-HT-7690-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	8c74b94d-14f8-4e14-a9ec-da0a310c2da0	1edb908b-2481-4655-bdfc-34ebeba029ae	TACAGCTGGCGCTGGGCCTTC	0.532	116	151
NOTCH2	4853	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	1	120510154	120510154	+	Missense_Mutation	SNP	C	C	T			TCGA-HT-7690-01A-11D-2253-08	TCGA-HT-7690-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	8c74b94d-14f8-4e14-a9ec-da0a310c2da0	1edb908b-2481-4655-bdfc-34ebeba029ae	CATCTCACAACGAGGTCCTGC	0.498	11	124
XCL1	6375	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	1	168550354	168550354	+	Missense_Mutation	SNP	G	G	A			TCGA-HT-7690-01A-11D-2253-08	TCGA-HT-7690-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	8c74b94d-14f8-4e14-a9ec-da0a310c2da0	1edb908b-2481-4655-bdfc-34ebeba029ae	GAGAGACGTGGTCAGGAGCAT	0.483	26	52
PI3	5266	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	20	43804672	43804672	+	Missense_Mutation	SNP	G	G	C			TCGA-HT-7690-01A-11D-2253-08	TCGA-HT-7690-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	8c74b94d-14f8-4e14-a9ec-da0a310c2da0	1edb908b-2481-4655-bdfc-34ebeba029ae	GATCCGGTGCGCCATGTTGAA	0.512	37	60
IDH1	3417	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	2	209113112	209113112	+	Missense_Mutation	SNP	C	C	T	rs121913500		TCGA-HT-7690-01A-11D-2253-08	TCGA-HT-7690-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	8c74b94d-14f8-4e14-a9ec-da0a310c2da0	1edb908b-2481-4655-bdfc-34ebeba029ae	ATAAGCATGACGACCTATGAT	0.393	44	76
CNOT6L	246175	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	4	78665985	78665985	+	Missense_Mutation	SNP	C	C	T			TCGA-HT-7690-01A-11D-2253-08	TCGA-HT-7690-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	8c74b94d-14f8-4e14-a9ec-da0a310c2da0	1edb908b-2481-4655-bdfc-34ebeba029ae	TGCCGGGTAGCGTATTTATCA	0.393	16	18
PKHD1	5314	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	6	51747892	51747892	+	Splice_Site	SNP	T	T	C			TCGA-HT-7690-01A-11D-2253-08	TCGA-HT-7690-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	8c74b94d-14f8-4e14-a9ec-da0a310c2da0	1edb908b-2481-4655-bdfc-34ebeba029ae	GGCACTTACCTTGTGGGCAAA	0.388	15	25
KEL	3792	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	7	142658506	142658506	+	Missense_Mutation	SNP	A	A	C			TCGA-HT-7690-01A-11D-2253-08	TCGA-HT-7690-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	8c74b94d-14f8-4e14-a9ec-da0a310c2da0	1edb908b-2481-4655-bdfc-34ebeba029ae	GAGCAGGCCCAAAATCAGGAT	0.567	15	14
KCNB2	9312	hgsc.bcm.edu;broad.mit.edu	37	8	73848875	73848875	+	Missense_Mutation	SNP	C	C	T			TCGA-HT-7690-01A-11D-2253-08	TCGA-HT-7690-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	8c74b94d-14f8-4e14-a9ec-da0a310c2da0	1edb908b-2481-4655-bdfc-34ebeba029ae	GGAGCAGAAACGCCAAGAGAA	0.438	4	62
ATRX	546	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	X	76849221	76849221	+	Missense_Mutation	SNP	T	T	C			TCGA-HT-7690-01A-11D-2253-08	TCGA-HT-7690-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	8c74b94d-14f8-4e14-a9ec-da0a310c2da0	1edb908b-2481-4655-bdfc-34ebeba029ae	AGTACCATTTTCCCAGAATGC	0.363	48	12
ATP11C	286410	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	X	138857058	138857058	+	Silent	SNP	T	T	C			TCGA-HT-7690-01A-11D-2253-08	TCGA-HT-7690-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	8c74b94d-14f8-4e14-a9ec-da0a310c2da0	1edb908b-2481-4655-bdfc-34ebeba029ae	GCACCCAGACTTTCAGGCCTG	0.483	6	53
ADRA1B	147	broad.mit.edu;ucsc.edu	37	5	159344767	159344767	+	Missense_Mutation	SNP	G	G	T			TCGA-HT-7690-01A-11D-2253-08	TCGA-HT-7690-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	8c74b94d-14f8-4e14-a9ec-da0a310c2da0	1edb908b-2481-4655-bdfc-34ebeba029ae	AACTTTTTAAGTTCTCCAGGG	0.498	46	51
TBC1D17	79735	broad.mit.edu;hgsc.bcm.edu	37	19	50387777	50387777	+	Frame_Shift_Del	DEL	G	G	-			TCGA-HT-7690-01A-11D-2253-08	TCGA-HT-7690-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	8c74b94d-14f8-4e14-a9ec-da0a310c2da0	1edb908b-2481-4655-bdfc-34ebeba029ae	AGAACGAGGTGGATGCTTTCT	0.597	40	113