Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_file Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID ref_context gc_content t_alt_count t_ref_count FAM76B 143684 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 11 95512812 95512812 + Missense_Mutation SNP C C G TCGA-HT-7693-01A-11D-2253-08 TCGA-HT-7693-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx 6f18cb1e-8576-4fd3-a7a1-eb549089bad2 eb46a1d3-0492-467e-9576-fd233bbff676 TGGGCTTTTTCTTTGGAGTTT 0.308 20 172 MGAT4C 25834 hgsc.bcm.edu;broad.mit.edu 37 12 86373270 86373270 + Missense_Mutation SNP C C G TCGA-HT-7693-01A-11D-2253-08 TCGA-HT-7693-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx 6f18cb1e-8576-4fd3-a7a1-eb549089bad2 eb46a1d3-0492-467e-9576-fd233bbff676 TCCCCAACATCTAGGGCTCCA 0.318 5 65 HECTD1 25831 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 14 31590686 31590686 + Missense_Mutation SNP C C T TCGA-HT-7693-01A-11D-2253-08 TCGA-HT-7693-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx 6f18cb1e-8576-4fd3-a7a1-eb549089bad2 eb46a1d3-0492-467e-9576-fd233bbff676 GCCAGCTCGACGTTGCAGGGA 0.507 18 38 PNN 5411 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 14 39648579 39648579 + Missense_Mutation SNP A A G TCGA-HT-7693-01A-11D-2253-08 TCGA-HT-7693-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx 6f18cb1e-8576-4fd3-a7a1-eb549089bad2 eb46a1d3-0492-467e-9576-fd233bbff676 TATAAGAACTAAGACAAAGCC 0.338 4 25 TP53 7157 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 17 7577121 7577121 + Missense_Mutation SNP G G A rs121913343 TCGA-HT-7693-01A-11D-2253-08 TCGA-HT-7693-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx 6f18cb1e-8576-4fd3-a7a1-eb549089bad2 eb46a1d3-0492-467e-9576-fd233bbff676 GCACAAACACGCACCTCAAAG 0.542 35 2 NLRP5 126206 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 19 56539141 56539141 + Silent SNP C C T TCGA-HT-7693-01A-11D-2253-08 TCGA-HT-7693-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx 6f18cb1e-8576-4fd3-a7a1-eb549089bad2 eb46a1d3-0492-467e-9576-fd233bbff676 CCCCTCGAGGCGTGGTCCGGC 0.592 17 22 OR6N2 81442 hgsc.bcm.edu;broad.mit.edu 37 1 158747181 158747181 + Missense_Mutation SNP A A G TCGA-HT-7693-01A-11D-2253-08 TCGA-HT-7693-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx 6f18cb1e-8576-4fd3-a7a1-eb549089bad2 eb46a1d3-0492-467e-9576-fd233bbff676 AATATTAGACAACATCTTAGG 0.448 11 167 SOGA1 140710 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 20 35445842 35445842 + Silent SNP G G A TCGA-HT-7693-01A-11D-2253-08 TCGA-HT-7693-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx 6f18cb1e-8576-4fd3-a7a1-eb549089bad2 eb46a1d3-0492-467e-9576-fd233bbff676 GCCTTCCCCAGGGAGCGGGTT 0.453 12 13 KRTAP13-3 337960 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 21 31798186 31798186 + Silent SNP G G A TCGA-HT-7693-01A-11D-2253-08 TCGA-HT-7693-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx 6f18cb1e-8576-4fd3-a7a1-eb549089bad2 eb46a1d3-0492-467e-9576-fd233bbff676 AGTAACCCCCGTGGGAGCAGG 0.542 79 102 COLEC11 78989 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 2 3691639 3691639 + Silent SNP C C T TCGA-HT-7693-01A-11D-2253-08 TCGA-HT-7693-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx 6f18cb1e-8576-4fd3-a7a1-eb549089bad2 eb46a1d3-0492-467e-9576-fd233bbff676 TGGCCTCGGGCGGCTGGAACG 0.617 52 71 XDH 7498 hgsc.bcm.edu;broad.mit.edu 37 2 31589846 31589846 + Missense_Mutation SNP C C T TCGA-HT-7693-01A-11D-2253-08 TCGA-HT-7693-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx 6f18cb1e-8576-4fd3-a7a1-eb549089bad2 eb46a1d3-0492-467e-9576-fd233bbff676 TCTTGGCCACCGATGTATATC 0.537 8 136 LRP2 4036 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 2 170026253 170026253 + Missense_Mutation SNP C C A TCGA-HT-7693-01A-11D-2253-08 TCGA-HT-7693-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx 6f18cb1e-8576-4fd3-a7a1-eb549089bad2 eb46a1d3-0492-467e-9576-fd233bbff676 GTCAGCGGATCCATCGCATTT 0.428 17 138 IDH1 3417 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 2 209113113 209113113 + Missense_Mutation SNP G G A rs121913499 TCGA-HT-7693-01A-11D-2253-08 TCGA-HT-7693-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx 6f18cb1e-8576-4fd3-a7a1-eb549089bad2 eb46a1d3-0492-467e-9576-fd233bbff676 TAAGCATGACGACCTATGATG 0.398 54 59 FYCO1 79443 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 3 46023170 46023170 + Splice_Site SNP T T C TCGA-HT-7693-01A-11D-2253-08 TCGA-HT-7693-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx 6f18cb1e-8576-4fd3-a7a1-eb549089bad2 eb46a1d3-0492-467e-9576-fd233bbff676 TCACAGCATCTTTAAGACAAC 0.408 36 42 EPHA3 2042 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 3 89480429 89480429 + Missense_Mutation SNP A A G TCGA-HT-7693-01A-11D-2253-08 TCGA-HT-7693-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx 6f18cb1e-8576-4fd3-a7a1-eb549089bad2 eb46a1d3-0492-467e-9576-fd233bbff676 CTTGATCAACAGTAACTTGGT 0.478 21 44 SLCO4C1 353189 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 5 101631898 101631898 + Missense_Mutation SNP C C G TCGA-HT-7693-01A-11D-2253-08 TCGA-HT-7693-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx 6f18cb1e-8576-4fd3-a7a1-eb549089bad2 eb46a1d3-0492-467e-9576-fd233bbff676 GCGACGCAGACAAGCGGCGCA 0.577 24 39 MUC17 140453 hgsc.bcm.edu;ucsc.edu 37 7 100684864 100684864 + Silent SNP A A T TCGA-HT-7693-01A-11D-2253-08 TCGA-HT-7693-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx 6f18cb1e-8576-4fd3-a7a1-eb549089bad2 eb46a1d3-0492-467e-9576-fd233bbff676 GTACCAGCATACCAACCTCAA 0.502 573 511 C8orf47 0 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 8 99101917 99101917 + Missense_Mutation SNP G G C TCGA-HT-7693-01A-11D-2253-08 TCGA-HT-7693-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx 6f18cb1e-8576-4fd3-a7a1-eb549089bad2 eb46a1d3-0492-467e-9576-fd233bbff676 TTTCCAAAGAGAATGAATCTC 0.483 18 38 ZFAT 57623 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 8 135649705 135649705 + Splice_Site SNP T T C TCGA-HT-7693-01A-11D-2253-08 TCGA-HT-7693-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx 6f18cb1e-8576-4fd3-a7a1-eb549089bad2 eb46a1d3-0492-467e-9576-fd233bbff676 AGCATTTACCTGCTTCTCCTT 0.468 100 137 OR5C1 392391 hgsc.bcm.edu;broad.mit.edu 37 9 125551909 125551909 + Missense_Mutation SNP G G A TCGA-HT-7693-01A-11D-2253-08 TCGA-HT-7693-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx 6f18cb1e-8576-4fd3-a7a1-eb549089bad2 eb46a1d3-0492-467e-9576-fd233bbff676 ATCCACATGCGCTCGGTCGAG 0.592 7 87 PAGE1 8712 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 X 49455852 49455852 + Splice_Site SNP C C T TCGA-HT-7693-01A-11D-2253-08 TCGA-HT-7693-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx 6f18cb1e-8576-4fd3-a7a1-eb549089bad2 eb46a1d3-0492-467e-9576-fd233bbff676 GACTACCTACCTTCTGCGGGC 0.468 16 71 TAF1 6872 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 X 70618475 70618475 + Missense_Mutation SNP G G A TCGA-HT-7693-01A-11D-2253-08 TCGA-HT-7693-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx 6f18cb1e-8576-4fd3-a7a1-eb549089bad2 eb46a1d3-0492-467e-9576-fd233bbff676 CGAAAAGAACGGCGGAGGATT 0.473 29 44 ATRX 546 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 X 76813058 76813058 + Missense_Mutation SNP C C T TCGA-HT-7693-01A-11D-2253-08 TCGA-HT-7693-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx 6f18cb1e-8576-4fd3-a7a1-eb549089bad2 eb46a1d3-0492-467e-9576-fd233bbff676 ATCAACAACTCGAAAAGACAG 0.343 66 83 HDX 139324 hgsc.bcm.edu;broad.mit.edu 37 X 83723854 83723854 + Missense_Mutation SNP A A G TCGA-HT-7693-01A-11D-2253-08 TCGA-HT-7693-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx 6f18cb1e-8576-4fd3-a7a1-eb549089bad2 eb46a1d3-0492-467e-9576-fd233bbff676 ATGGACAAACAATTTCCTTCT 0.473 9 147 ALG13 79868 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 X 110952273 110952273 + Missense_Mutation SNP G G C TCGA-HT-7693-01A-11D-2253-08 TCGA-HT-7693-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx 6f18cb1e-8576-4fd3-a7a1-eb549089bad2 eb46a1d3-0492-467e-9576-fd233bbff676 AAACTTTTGAGTCTGTAAGTA 0.388 5 11 MMGT1 93380 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 X 135047268 135047268 + Missense_Mutation SNP G G A rs150859420 TCGA-HT-7693-01A-11D-2253-08 TCGA-HT-7693-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx 6f18cb1e-8576-4fd3-a7a1-eb549089bad2 eb46a1d3-0492-467e-9576-fd233bbff676 TGCTGTATCCGAAGGCCGGAA 0.358 40 283 AFF2 2334 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 X 148035253 148035253 + Missense_Mutation SNP G G A TCGA-HT-7693-01A-11D-2253-08 TCGA-HT-7693-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx 6f18cb1e-8576-4fd3-a7a1-eb549089bad2 eb46a1d3-0492-467e-9576-fd233bbff676 GAGGCACCTCGTGTGGCAACT 0.567 88 125 TSR2 90121 broad.mit.edu;ucsc.edu 37 X 54470611 54470611 + Missense_Mutation SNP G G C TCGA-HT-7693-01A-11D-2253-08 TCGA-HT-7693-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx 6f18cb1e-8576-4fd3-a7a1-eb549089bad2 eb46a1d3-0492-467e-9576-fd233bbff676 GTGTGGAAGAGATGGAGGTGA 0.498 73 98 CD248 57124 broad.mit.edu;ucsc.edu 37 11 66084109 66084109 + Silent SNP G G A TCGA-HT-7693-01A-11D-2253-08 TCGA-HT-7693-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx 6f18cb1e-8576-4fd3-a7a1-eb549089bad2 eb46a1d3-0492-467e-9576-fd233bbff676 GGGCCACACAGCGCTGGGCCG 0.701 32 18 CELSR1 9620 broad.mit.edu;ucsc.edu 37 22 46793715 46793715 + Missense_Mutation SNP C C T TCGA-HT-7693-01A-11D-2253-08 TCGA-HT-7693-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx 6f18cb1e-8576-4fd3-a7a1-eb549089bad2 eb46a1d3-0492-467e-9576-fd233bbff676 AGGGTGGCGACGTTGGTGGGC 0.602 15 19 SULT1E1 6783 broad.mit.edu;ucsc.edu 37 4 70709895 70709895 + Silent SNP C C T TCGA-HT-7693-01A-11D-2253-08 TCGA-HT-7693-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx 6f18cb1e-8576-4fd3-a7a1-eb549089bad2 eb46a1d3-0492-467e-9576-fd233bbff676 TCATGAAGGGCGACAATTTCT 0.393 66 146