Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_file Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID ref_context gc_content t_alt_count t_ref_count OR51B2 79345 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 11 5345181 5345181 + Missense_Mutation SNP A A G TCGA-HT-7855-01A-11D-2395-08 TCGA-HT-7855-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx 1bc9fea0-cb11-47c4-bfe6-a813ee66a3eb 0ba77c15-05f7-4769-8070-6a2a63a9f466 ATCATATGCCATTGCCAGGAG 0.458 9 87 SCGB2A2 4250 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 11 62037739 62037739 + Silent SNP C C T rs137975337 byFrequency TCGA-HT-7855-01A-11D-2395-08 TCGA-HT-7855-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx 1bc9fea0-cb11-47c4-bfe6-a813ee66a3eb 0ba77c15-05f7-4769-8070-6a2a63a9f466 AGCACTGCTACGCAGGTGAGT 0.592 97 113 OR10G3 26533 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 14 22038134 22038134 + Missense_Mutation SNP C C T rs142649226 byFrequency TCGA-HT-7855-01A-11D-2395-08 TCGA-HT-7855-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx 1bc9fea0-cb11-47c4-bfe6-a813ee66a3eb 0ba77c15-05f7-4769-8070-6a2a63a9f466 ACGGTGACCACGGTTACATGG 0.577 20 115 FBXO33 254170 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 14 39870639 39870639 + Silent SNP G G A rs144987416 TCGA-HT-7855-01A-11D-2395-08 TCGA-HT-7855-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx 1bc9fea0-cb11-47c4-bfe6-a813ee66a3eb 0ba77c15-05f7-4769-8070-6a2a63a9f466 CTTCACTCTTGATATCAAAAG 0.398 43 54 SLC28A2 9153 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 15 45561537 45561537 + Splice_Site SNP T T C TCGA-HT-7855-01A-11D-2395-08 TCGA-HT-7855-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx 1bc9fea0-cb11-47c4-bfe6-a813ee66a3eb 0ba77c15-05f7-4769-8070-6a2a63a9f466 TTCACTCAGGTCATCTGCTCC 0.478 32 122 TP53 7157 hgsc.bcm.edu;broad.mit.edu 37 17 7578542 7578542 + Missense_Mutation SNP G G C TCGA-HT-7855-01A-11D-2395-08 TCGA-HT-7855-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx 1bc9fea0-cb11-47c4-bfe6-a813ee66a3eb 0ba77c15-05f7-4769-8070-6a2a63a9f466 ATCTTGTTGAGGGCAGGGGAG 0.552 31 3 HID1 283987 hgsc.bcm.edu;ucsc.edu 37 17 72949151 72949151 + Nonsense_Mutation SNP G G A TCGA-HT-7855-01A-11D-2395-08 TCGA-HT-7855-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx 1bc9fea0-cb11-47c4-bfe6-a813ee66a3eb 0ba77c15-05f7-4769-8070-6a2a63a9f466 GTGGACGGTCGCCGCTGCTCC 0.687 8 17 MYO1F 4542 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 19 8620581 8620581 + Missense_Mutation SNP C C T TCGA-HT-7855-01A-11D-2395-08 TCGA-HT-7855-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx 1bc9fea0-cb11-47c4-bfe6-a813ee66a3eb 0ba77c15-05f7-4769-8070-6a2a63a9f466 CGGAGGTTGGCGGCAATGGCG 0.617 29 69 ICAM3 3385 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 19 10445307 10445307 + Silent SNP A A G TCGA-HT-7855-01A-11D-2395-08 TCGA-HT-7855-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx 1bc9fea0-cb11-47c4-bfe6-a813ee66a3eb 0ba77c15-05f7-4769-8070-6a2a63a9f466 TCTCGGTAGCATTTAGCTGAA 0.632 37 60 EID2B 126272 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 19 40023429 40023429 + Missense_Mutation SNP G G C TCGA-HT-7855-01A-11D-2395-08 TCGA-HT-7855-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx 1bc9fea0-cb11-47c4-bfe6-a813ee66a3eb 0ba77c15-05f7-4769-8070-6a2a63a9f466 CAACAGCCCAGTCGGCTCCGC 0.647 10 24 FLG 2312 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 1 152284999 152284999 + Missense_Mutation SNP C C T rs142483068 byFrequency TCGA-HT-7855-01A-11D-2395-08 TCGA-HT-7855-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx 1bc9fea0-cb11-47c4-bfe6-a813ee66a3eb 0ba77c15-05f7-4769-8070-6a2a63a9f466 CCCTGAACGTCGAGACCTTTC 0.567 149 410 ARHGEF2 9181 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 1 155931587 155931587 + Missense_Mutation SNP T T C TCGA-HT-7855-01A-11D-2395-08 TCGA-HT-7855-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx 1bc9fea0-cb11-47c4-bfe6-a813ee66a3eb 0ba77c15-05f7-4769-8070-6a2a63a9f466 CGGTTGTAGATCTCCTGCAGA 0.607 44 49 IFI16 3428 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 1 158988254 158988254 + Missense_Mutation SNP C C T TCGA-HT-7855-01A-11D-2395-08 TCGA-HT-7855-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx 1bc9fea0-cb11-47c4-bfe6-a813ee66a3eb 0ba77c15-05f7-4769-8070-6a2a63a9f466 ATCATCATATCAGATTATTTG 0.368 10 68 TMPRSS6 164656 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 22 37469676 37469676 + Missense_Mutation SNP G G C TCGA-HT-7855-01A-11D-2395-08 TCGA-HT-7855-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx 1bc9fea0-cb11-47c4-bfe6-a813ee66a3eb 0ba77c15-05f7-4769-8070-6a2a63a9f466 CTGGAATGTGGCTCTGCAAAC 0.587 11 100 IL18R1 8809 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 2 102984511 102984511 + Silent SNP T T A TCGA-HT-7855-01A-11D-2395-08 TCGA-HT-7855-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx 1bc9fea0-cb11-47c4-bfe6-a813ee66a3eb 0ba77c15-05f7-4769-8070-6a2a63a9f466 ACACAGGATCTTACTTTTTCC 0.403 14 149 IDH1 3417 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 2 209113113 209113113 + Missense_Mutation SNP G G A rs121913499 TCGA-HT-7855-01A-11D-2395-08 TCGA-HT-7855-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx 1bc9fea0-cb11-47c4-bfe6-a813ee66a3eb 0ba77c15-05f7-4769-8070-6a2a63a9f466 TAAGCATGACGACCTATGATG 0.398 45 52 SLCO2A1 6578 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 3 133654661 133654661 + Nonsense_Mutation SNP G G A TCGA-HT-7855-01A-11D-2395-08 TCGA-HT-7855-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx 1bc9fea0-cb11-47c4-bfe6-a813ee66a3eb 0ba77c15-05f7-4769-8070-6a2a63a9f466 CAGGCCCCTCGCCTCCCCAAG 0.602 4 30 RHOH 399 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 4 40245505 40245505 + Missense_Mutation SNP G G A TCGA-HT-7855-01A-11D-2395-08 TCGA-HT-7855-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx 1bc9fea0-cb11-47c4-bfe6-a813ee66a3eb 0ba77c15-05f7-4769-8070-6a2a63a9f466 TGAGTGCGCCGTCCGAACTGC 0.542 37 29 SLC6A3 6531 hgsc.bcm.edu;broad.mit.edu 37 5 1422122 1422122 + Missense_Mutation SNP C C T rs138948519 TCGA-HT-7855-01A-11D-2395-08 TCGA-HT-7855-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx 1bc9fea0-cb11-47c4-bfe6-a813ee66a3eb 0ba77c15-05f7-4769-8070-6a2a63a9f466 AGGTGCAGCACGCCACGTCTG 0.662 8 92 SLC12A2 6558 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 5 127449952 127449952 + Missense_Mutation SNP T T C TCGA-HT-7855-01A-11D-2395-08 TCGA-HT-7855-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx 1bc9fea0-cb11-47c4-bfe6-a813ee66a3eb 0ba77c15-05f7-4769-8070-6a2a63a9f466 CATTAGATTGTCATGGATTGT 0.373 58 146 ACAT2 39 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 6 160199292 160199292 + Missense_Mutation SNP C C G TCGA-HT-7855-01A-11D-2395-08 TCGA-HT-7855-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx 1bc9fea0-cb11-47c4-bfe6-a813ee66a3eb 0ba77c15-05f7-4769-8070-6a2a63a9f466 AGTTAAAGAACTTGGATTAAA 0.388 13 24 STK31 56164 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 7 23871943 23871943 + Nonsense_Mutation SNP T T A TCGA-HT-7855-01A-11D-2395-08 TCGA-HT-7855-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx 1bc9fea0-cb11-47c4-bfe6-a813ee66a3eb 0ba77c15-05f7-4769-8070-6a2a63a9f466 TGGATAAATGTATGGAGAAGA 0.333 59 54 C12orf71 0 broad.mit.edu;ucsc.edu 37 12 27234398 27234398 + Missense_Mutation SNP C C A TCGA-HT-7855-01A-11D-2395-08 TCGA-HT-7855-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx 1bc9fea0-cb11-47c4-bfe6-a813ee66a3eb 0ba77c15-05f7-4769-8070-6a2a63a9f466 CCTGGCTTATCATCTGCCATG 0.463 40 63 IPO9 55705 broad.mit.edu;ucsc.edu 37 1 201817721 201817721 + Splice_Site SNP A A G TCGA-HT-7855-01A-11D-2395-08 TCGA-HT-7855-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx 1bc9fea0-cb11-47c4-bfe6-a813ee66a3eb 0ba77c15-05f7-4769-8070-6a2a63a9f466 GTGTGCTGACAGGTACCAGAA 0.512 18 27 BMP6 654 broad.mit.edu;ucsc.edu 37 6 7727731 7727731 + Silent SNP G G A TCGA-HT-7855-01A-11D-2395-08 TCGA-HT-7855-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx 1bc9fea0-cb11-47c4-bfe6-a813ee66a3eb 0ba77c15-05f7-4769-8070-6a2a63a9f466 CCGCGCACCCGCTCAACCGCA 0.741 3 13 KIAA0556 23247 broad.mit.edu;ucsc.edu 37 16 27640072 27640072 + Silent SNP T T C TCGA-HT-7855-01A-11D-2395-08 TCGA-HT-7855-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx 1bc9fea0-cb11-47c4-bfe6-a813ee66a3eb 0ba77c15-05f7-4769-8070-6a2a63a9f466 ACGGTGCCAATTCGGAGCTGA 0.522 45 143 TCEB3 6924 broad.mit.edu;hgsc.bcm.edu 37 1 24077560 24077561 + Frame_Shift_Del DEL AA AA - TCGA-HT-7855-01A-11D-2395-08 TCGA-HT-7855-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx 1bc9fea0-cb11-47c4-bfe6-a813ee66a3eb 0ba77c15-05f7-4769-8070-6a2a63a9f466 GAGATGAGAGAAAGAGGTGTCA 0.48 50 120 GBP2 2634 broad.mit.edu;hgsc.bcm.edu 37 1 89578261 89578263 + In_Frame_Del DEL TCT TCT - rs142287187 TCGA-HT-7855-01A-11D-2395-08 TCGA-HT-7855-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx 1bc9fea0-cb11-47c4-bfe6-a813ee66a3eb 0ba77c15-05f7-4769-8070-6a2a63a9f466 CTGCTTGACATCTTCTTCTAAAG 0.438 40 190 UXS1 80146 broad.mit.edu;hgsc.bcm.edu 37 2 106710502 106710505 + Frame_Shift_Del DEL CTTT CTTT - TCGA-HT-7855-01A-11D-2395-08 TCGA-HT-7855-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx 1bc9fea0-cb11-47c4-bfe6-a813ee66a3eb 0ba77c15-05f7-4769-8070-6a2a63a9f466 CGAGTCCGTCCTTTCTTTATTCTG 0.412 35 31 ZXDC 79364 broad.mit.edu;hgsc.bcm.edu 37 3 126191130 126191133 + Frame_Shift_Del DEL ATAA ATAA - TCGA-HT-7855-01A-11D-2395-08 TCGA-HT-7855-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx 1bc9fea0-cb11-47c4-bfe6-a813ee66a3eb 0ba77c15-05f7-4769-8070-6a2a63a9f466 ACTCACTGTGATAAATGTCTTCTC 0.475 44 77 YTHDC1 91746 broad.mit.edu;hgsc.bcm.edu 37 4 69203308 69203310 + In_Frame_Del DEL AGG AGG - TCGA-HT-7855-01A-11D-2395-08 TCGA-HT-7855-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx 1bc9fea0-cb11-47c4-bfe6-a813ee66a3eb 0ba77c15-05f7-4769-8070-6a2a63a9f466 CATCTGGCGTAGGAGATTTGGCC 0.404 21 37 ANK2 287 broad.mit.edu;hgsc.bcm.edu 37 4 114277079 114277080 + Frame_Shift_Del DEL CT CT - TCGA-HT-7855-01A-11D-2395-08 TCGA-HT-7855-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx 1bc9fea0-cb11-47c4-bfe6-a813ee66a3eb 0ba77c15-05f7-4769-8070-6a2a63a9f466 GCCACAAAGACTCTCTGGAAGC 0.51 45 65 OR1J4 26219 broad.mit.edu;hgsc.bcm.edu 37 9 125281597 125281599 + In_Frame_Del DEL TTC TTC - TCGA-HT-7855-01A-11D-2395-08 TCGA-HT-7855-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx 1bc9fea0-cb11-47c4-bfe6-a813ee66a3eb 0ba77c15-05f7-4769-8070-6a2a63a9f466 CACCCCCATGTTCTTCTTCCTCA 0.498 133 173 CALCOCO1 57658 broad.mit.edu;hgsc.bcm.edu 37 12 54110173 54110175 + In_Frame_Del DEL CTC CTC - TCGA-HT-7855-01A-11D-2395-08 TCGA-HT-7855-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx 1bc9fea0-cb11-47c4-bfe6-a813ee66a3eb 0ba77c15-05f7-4769-8070-6a2a63a9f466 AGTGATGGTTCTCCTGTTGTGCC 0.542 40 50 SMARCA4 6597 broad.mit.edu;hgsc.bcm.edu 37 19 11106926 11106928 + In_Frame_Del DEL AGA AGA - TCGA-HT-7855-01A-11D-2395-08 TCGA-HT-7855-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx 1bc9fea0-cb11-47c4-bfe6-a813ee66a3eb 0ba77c15-05f7-4769-8070-6a2a63a9f466 CTCATCGACCAGAAGAAGGACAA 0.576 42 159 ATRX 546 broad.mit.edu;hgsc.bcm.edu 37 X 76918950 76918951 + Frame_Shift_Del DEL CA CA - TCGA-HT-7855-01A-11D-2395-08 TCGA-HT-7855-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx 1bc9fea0-cb11-47c4-bfe6-a813ee66a3eb 0ba77c15-05f7-4769-8070-6a2a63a9f466 CTCCGTCACTCACAGTCAATTT 0.361 27 5