Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_file Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID ref_context gc_content t_alt_count t_ref_count ANKK1 255239 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 11 113267965 113267965 + Silent SNP C C T TCGA-HT-7857-01A-11D-2395-08 TCGA-HT-7857-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx 58282498-c68f-4b15-89bb-68f49431393c 370dc8dd-90cf-4a60-be75-ccc17f9310fb TCGAGACAGACATACTGCTGT 0.582 10 42 FMNL3 91010 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 12 50043069 50043069 + Silent SNP A A G TCGA-HT-7857-01A-11D-2395-08 TCGA-HT-7857-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx 58282498-c68f-4b15-89bb-68f49431393c 370dc8dd-90cf-4a60-be75-ccc17f9310fb GCTTGAAGCCATACACAGCTC 0.572 18 99 PTPN11 5781 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 12 112888197 112888197 + Missense_Mutation SNP T T A TCGA-HT-7857-01A-11D-2395-08 TCGA-HT-7857-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx 58282498-c68f-4b15-89bb-68f49431393c 370dc8dd-90cf-4a60-be75-ccc17f9310fb GGGAGAAATTTGCCACTTTGG 0.418 50 101 NPAP1 23742 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 15 24921605 24921605 + Silent SNP C C T TCGA-HT-7857-01A-11D-2395-08 TCGA-HT-7857-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx 58282498-c68f-4b15-89bb-68f49431393c 370dc8dd-90cf-4a60-be75-ccc17f9310fb CCCAGGGAGACGTGGCCTCCT 0.592 6 47 VPS9D1 9605 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 16 89785502 89785502 + Silent SNP G G A TCGA-HT-7857-01A-11D-2395-08 TCGA-HT-7857-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx 58282498-c68f-4b15-89bb-68f49431393c 370dc8dd-90cf-4a60-be75-ccc17f9310fb GGTATTCCGTGTATGCCTCCT 0.552 19 114 NF1 4763 hgsc.bcm.edu;broad.mit.edu 37 17 29576001 29576001 + Splice_Site SNP G G A TCGA-HT-7857-01A-11D-2395-08 TCGA-HT-7857-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx 58282498-c68f-4b15-89bb-68f49431393c 370dc8dd-90cf-4a60-be75-ccc17f9310fb TTTTTTTGTAGGTTAGAACCA 0.368 48 38 DMRTC2 63946 hgsc.bcm.edu;ucsc.edu 37 19 42354645 42354645 + Silent SNP C C T TCGA-HT-7857-01A-11D-2395-08 TCGA-HT-7857-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx 58282498-c68f-4b15-89bb-68f49431393c 370dc8dd-90cf-4a60-be75-ccc17f9310fb AGAGTGGCAGCTGCAGCAAGA 0.637 28 50 ABCA4 24 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 1 94528252 94528252 + Silent SNP G G T TCGA-HT-7857-01A-11D-2395-08 TCGA-HT-7857-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx 58282498-c68f-4b15-89bb-68f49431393c 370dc8dd-90cf-4a60-be75-ccc17f9310fb AGGCAAACCCGCCCCAGATGT 0.562 10 38 TET2 54790 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 4 106155166 106155166 + Missense_Mutation SNP C C T TCGA-HT-7857-01A-11D-2395-08 TCGA-HT-7857-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx 58282498-c68f-4b15-89bb-68f49431393c 370dc8dd-90cf-4a60-be75-ccc17f9310fb ACCATCACCTCCCATTTGCCA 0.527 11 43 NAA15 80155 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 4 140262069 140262069 + Nonsense_Mutation SNP G G A TCGA-HT-7857-01A-11D-2395-08 TCGA-HT-7857-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx 58282498-c68f-4b15-89bb-68f49431393c 370dc8dd-90cf-4a60-be75-ccc17f9310fb TCTTTAGGTTGGCACGTTTAT 0.363 26 53 DUSP22 56940 hgsc.bcm.edu;broad.mit.edu 37 6 348272 348272 + Nonsense_Mutation SNP C C T TCGA-HT-7857-01A-11D-2395-08 TCGA-HT-7857-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx 58282498-c68f-4b15-89bb-68f49431393c 370dc8dd-90cf-4a60-be75-ccc17f9310fb TGAGGTCCATCAGGTAAGCAG 0.577 15 140 DNAH8 1769 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 6 38810444 38810444 + Missense_Mutation SNP G G A TCGA-HT-7857-01A-11D-2395-08 TCGA-HT-7857-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx 58282498-c68f-4b15-89bb-68f49431393c 370dc8dd-90cf-4a60-be75-ccc17f9310fb GAAAGATGTCGTAAACTTCCA 0.323 25 68 EXOC4 60412 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 7 133749244 133749244 + Missense_Mutation SNP A A G TCGA-HT-7857-01A-11D-2395-08 TCGA-HT-7857-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx 58282498-c68f-4b15-89bb-68f49431393c 370dc8dd-90cf-4a60-be75-ccc17f9310fb GCTGCCATCAAGCAAGCCACC 0.572 21 80 UBR5 51366 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 8 103266680 103266680 + Silent SNP G G A TCGA-HT-7857-01A-11D-2395-08 TCGA-HT-7857-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx 58282498-c68f-4b15-89bb-68f49431393c 370dc8dd-90cf-4a60-be75-ccc17f9310fb TTGTGATTGAGGGCATAGGCT 0.408 11 77 KLHL25 64410 broad.mit.edu;ucsc.edu 37 15 86311637 86311637 + Missense_Mutation SNP C C T TCGA-HT-7857-01A-11D-2395-08 TCGA-HT-7857-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx 58282498-c68f-4b15-89bb-68f49431393c 370dc8dd-90cf-4a60-be75-ccc17f9310fb CACCTGTTCTCCGAGGGGTCA 0.602 17 140 OR10C1 442194 broad.mit.edu;ucsc.edu 37 6 29407957 29407957 + Missense_Mutation SNP G G T TCGA-HT-7857-01A-11D-2395-08 TCGA-HT-7857-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx 58282498-c68f-4b15-89bb-68f49431393c 370dc8dd-90cf-4a60-be75-ccc17f9310fb CTGCCCTCCAGTCCCCTATGT 0.567 20 164 EMC10 284361 broad.mit.edu;ucsc.edu 37 19 50981247 50981247 + Nonsense_Mutation SNP C C G TCGA-HT-7857-01A-11D-2395-08 TCGA-HT-7857-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx 58282498-c68f-4b15-89bb-68f49431393c 370dc8dd-90cf-4a60-be75-ccc17f9310fb CTGGAGCACTCATTTGAGATC 0.607 3 33 PSME4 23198 broad.mit.edu;hgsc.bcm.edu 37 2 54148047 54148049 + In_Frame_Del DEL AGG AGG - TCGA-HT-7857-01A-11D-2395-08 TCGA-HT-7857-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx 58282498-c68f-4b15-89bb-68f49431393c 370dc8dd-90cf-4a60-be75-ccc17f9310fb AGTATTCAGAAGGAGGCTTGTCA 0.374 22 75 PLA2G15 23659 broad.mit.edu;hgsc.bcm.edu 37 16 68293167 68293171 + Frame_Shift_Del DEL CGTGC CGTGC - rs142263893 TCGA-HT-7857-01A-11D-2395-08 TCGA-HT-7857-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx 58282498-c68f-4b15-89bb-68f49431393c 370dc8dd-90cf-4a60-be75-ccc17f9310fb AGAAGGTGTTCGTGCAGACACCCAC 0.58 16 67 ATRX 546 broad.mit.edu 37 X 76814303 76814306 + Frame_Shift_Del DEL ATAA ATAA - TCGA-HT-7857-01A-11D-2395-08 TCGA-HT-7857-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx 58282498-c68f-4b15-89bb-68f49431393c 370dc8dd-90cf-4a60-be75-ccc17f9310fb AGTAGAAATGATAAATAATCGTCC 0.289 18 68