Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_file Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID ref_context gc_content t_alt_count t_ref_count SFTPA1 653509 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 10 81373779 81373779 + Silent SNP G G A TCGA-HT-7860-01A-11D-2395-08 TCGA-HT-7860-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx d9a21c24-8e23-47d9-addd-e601b3f2e2c9 b10e61aa-2481-454d-bcfd-308c8fbc82bc CCGCAGGTCGGGGAAAAGAGC 0.562 92 86 PTEN 5728 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 10 89717727 89717727 + Missense_Mutation SNP G G C TCGA-HT-7860-01A-11D-2395-08 TCGA-HT-7860-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx d9a21c24-8e23-47d9-addd-e601b3f2e2c9 b10e61aa-2481-454d-bcfd-308c8fbc82bc CCTGTGTGTGGTGATATCAAA 0.398 22 20 PKD2L1 9033 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 10 102057297 102057297 + Silent SNP G G A TCGA-HT-7860-01A-11D-2395-08 TCGA-HT-7860-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx d9a21c24-8e23-47d9-addd-e601b3f2e2c9 b10e61aa-2481-454d-bcfd-308c8fbc82bc AGCCACCTCCGCTGTAGCTTG 0.627 21 27 MUC6 4588 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 11 1025338 1025338 + Silent SNP G G A TCGA-HT-7860-01A-11D-2395-08 TCGA-HT-7860-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx d9a21c24-8e23-47d9-addd-e601b3f2e2c9 b10e61aa-2481-454d-bcfd-308c8fbc82bc TGACCGTGTAGTTTCTGTCCG 0.677 55 106 OR8J3 81168 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 11 55904779 55904779 + Missense_Mutation SNP C C T TCGA-HT-7860-01A-11D-2395-08 TCGA-HT-7860-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx d9a21c24-8e23-47d9-addd-e601b3f2e2c9 b10e61aa-2481-454d-bcfd-308c8fbc82bc GAGGCAGAGCCGCCGAGACAC 0.473 33 86 OR10G4 390264 hgsc.bcm.edu;broad.mit.edu 37 11 123886716 123886716 + Silent SNP C C T rs144654389 byFrequency TCGA-HT-7860-01A-11D-2395-08 TCGA-HT-7860-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx d9a21c24-8e23-47d9-addd-e601b3f2e2c9 b10e61aa-2481-454d-bcfd-308c8fbc82bc TCCTGGCCACCGGCACTTGGC 0.547 106 243 ATF7IP 55729 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 12 14576907 14576907 + Missense_Mutation SNP G G A TCGA-HT-7860-01A-11D-2395-08 TCGA-HT-7860-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx d9a21c24-8e23-47d9-addd-e601b3f2e2c9 b10e61aa-2481-454d-bcfd-308c8fbc82bc AACGATGAGAGTGAGTGATCG 0.358 23 50 ARHGDIB 397 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 12 15103604 15103604 + Missense_Mutation SNP C C T rs149654565 TCGA-HT-7860-01A-11D-2395-08 TCGA-HT-7860-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx d9a21c24-8e23-47d9-addd-e601b3f2e2c9 b10e61aa-2481-454d-bcfd-308c8fbc82bc AGCTCATCATCATCATCCTCC 0.438 39 67 ABCC9 10060 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 12 22001088 22001088 + Silent SNP G G A rs2291550 by1000genomes TCGA-HT-7860-01A-11D-2395-08 TCGA-HT-7860-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx d9a21c24-8e23-47d9-addd-e601b3f2e2c9 b10e61aa-2481-454d-bcfd-308c8fbc82bc ATCTACCTTCGTCTTCGTCCT 0.433 25 38 ACVRL1 94 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 12 52309035 52309035 + Missense_Mutation SNP C C T rs148640185 TCGA-HT-7860-01A-11D-2395-08 TCGA-HT-7860-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx d9a21c24-8e23-47d9-addd-e601b3f2e2c9 b10e61aa-2481-454d-bcfd-308c8fbc82bc CATGACCTCCCGCAACTCGAG 0.612 18 69 KRT83 3889 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 12 52714809 52714809 + Missense_Mutation SNP G G A TCGA-HT-7860-01A-11D-2395-08 TCGA-HT-7860-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx d9a21c24-8e23-47d9-addd-e601b3f2e2c9 b10e61aa-2481-454d-bcfd-308c8fbc82bc CACGCACTGCGCGTTGGGGTC 0.627 110 202 SART3 9733 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 12 108919286 108919286 + Missense_Mutation SNP T T C TCGA-HT-7860-01A-11D-2395-08 TCGA-HT-7860-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx d9a21c24-8e23-47d9-addd-e601b3f2e2c9 b10e61aa-2481-454d-bcfd-308c8fbc82bc CACGGTGCCATGAGCCTTACA 0.507 23 62 PTPN11 5781 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 12 112888199 112888199 + Missense_Mutation SNP C C A rs121918454 TCGA-HT-7860-01A-11D-2395-08 TCGA-HT-7860-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx d9a21c24-8e23-47d9-addd-e601b3f2e2c9 b10e61aa-2481-454d-bcfd-308c8fbc82bc GAGAAATTTGCCACTTTGGCT 0.418 42 88 MORN3 283385 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 12 122091089 122091089 + Silent SNP G G A TCGA-HT-7860-01A-11D-2395-08 TCGA-HT-7860-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx d9a21c24-8e23-47d9-addd-e601b3f2e2c9 b10e61aa-2481-454d-bcfd-308c8fbc82bc ACAGCTGGCCGTGGTCCAGAT 0.607 31 77 FANCM 57697 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 14 45623200 45623200 + Silent SNP A A G TCGA-HT-7860-01A-11D-2395-08 TCGA-HT-7860-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx d9a21c24-8e23-47d9-addd-e601b3f2e2c9 b10e61aa-2481-454d-bcfd-308c8fbc82bc TATTGCAGCAAATGGGAATGA 0.284 29 68 HCN4 10021 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 15 73616057 73616057 + Missense_Mutation SNP T T C TCGA-HT-7860-01A-11D-2395-08 TCGA-HT-7860-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx d9a21c24-8e23-47d9-addd-e601b3f2e2c9 b10e61aa-2481-454d-bcfd-308c8fbc82bc GTGAGGGCTATGGCCACAGAA 0.697 19 33 ADAMTS17 170691 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 15 100657167 100657167 + Silent SNP G G A TCGA-HT-7860-01A-11D-2395-08 TCGA-HT-7860-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx d9a21c24-8e23-47d9-addd-e601b3f2e2c9 b10e61aa-2481-454d-bcfd-308c8fbc82bc GGTTCTCGCAGACCGCATGTT 0.627 20 29 TNRC6A 27327 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 16 24817937 24817937 + Missense_Mutation SNP C C T TCGA-HT-7860-01A-11D-2395-08 TCGA-HT-7860-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx d9a21c24-8e23-47d9-addd-e601b3f2e2c9 b10e61aa-2481-454d-bcfd-308c8fbc82bc GCAACAATCTCGTCAACTTGA 0.443 55 77 KCTD19 146212 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 16 67327473 67327473 + Nonsense_Mutation SNP C C T TCGA-HT-7860-01A-11D-2395-08 TCGA-HT-7860-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx d9a21c24-8e23-47d9-addd-e601b3f2e2c9 b10e61aa-2481-454d-bcfd-308c8fbc82bc CTGCTTGCTCCAGTCCTTCAG 0.547 17 186 GRAP 10750 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 17 18927576 18927576 + Silent SNP G G A TCGA-HT-7860-01A-11D-2395-08 TCGA-HT-7860-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx d9a21c24-8e23-47d9-addd-e601b3f2e2c9 b10e61aa-2481-454d-bcfd-308c8fbc82bc GCTTCTTGGCGATGGTGGTGG 0.622 6 19 NF1 4763 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 17 29664446 29664446 + Nonsense_Mutation SNP T T A TCGA-HT-7860-01A-11D-2395-08 TCGA-HT-7860-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx d9a21c24-8e23-47d9-addd-e601b3f2e2c9 b10e61aa-2481-454d-bcfd-308c8fbc82bc AAATTTTACTTGCTGTTTGGC 0.423 22 38 NF1 4763 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 17 29664466 29664466 + Missense_Mutation SNP G G C TCGA-HT-7860-01A-11D-2395-08 TCGA-HT-7860-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx d9a21c24-8e23-47d9-addd-e601b3f2e2c9 b10e61aa-2481-454d-bcfd-308c8fbc82bc CATTAGCAAAGTCAAGTCAGC 0.443 26 44 TNFRSF11A 8792 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 18 60052048 60052048 + Silent SNP C C T TCGA-HT-7860-01A-11D-2395-08 TCGA-HT-7860-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx d9a21c24-8e23-47d9-addd-e601b3f2e2c9 b10e61aa-2481-454d-bcfd-308c8fbc82bc ACTTCAAGGGCGACATCATCG 0.652 12 30 LMNB2 84823 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 19 2433894 2433894 + Missense_Mutation SNP G G A TCGA-HT-7860-01A-11D-2395-08 TCGA-HT-7860-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx d9a21c24-8e23-47d9-addd-e601b3f2e2c9 b10e61aa-2481-454d-bcfd-308c8fbc82bc GACGCTACCCGAGGCCGAGGC 0.667 49 143 KHSRP 8570 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 19 6416895 6416895 + Splice_Site SNP T T G TCGA-HT-7860-01A-11D-2395-08 TCGA-HT-7860-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx d9a21c24-8e23-47d9-addd-e601b3f2e2c9 b10e61aa-2481-454d-bcfd-308c8fbc82bc GGGACCACTCTGCAAGACAAG 0.687 25 65 STXBP2 6813 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 19 7705819 7705819 + Missense_Mutation SNP G G A TCGA-HT-7860-01A-11D-2395-08 TCGA-HT-7860-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx d9a21c24-8e23-47d9-addd-e601b3f2e2c9 b10e61aa-2481-454d-bcfd-308c8fbc82bc GAGCTAGGCCGCTCTCGTCTG 0.662 58 201 MUC16 94025 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 19 9063480 9063480 + Missense_Mutation SNP G G A TCGA-HT-7860-01A-11D-2395-08 TCGA-HT-7860-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx d9a21c24-8e23-47d9-addd-e601b3f2e2c9 b10e61aa-2481-454d-bcfd-308c8fbc82bc CTCTGGTAATGTGGAGGAAAC 0.468 23 67 MUC16 94025 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 19 9065959 9065959 + Missense_Mutation SNP G G T TCGA-HT-7860-01A-11D-2395-08 TCGA-HT-7860-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx d9a21c24-8e23-47d9-addd-e601b3f2e2c9 b10e61aa-2481-454d-bcfd-308c8fbc82bc CCAGTGGTCAGTCTCTCATCT 0.512 54 110 AP1M2 10053 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 19 10687903 10687903 + Missense_Mutation SNP C C T TCGA-HT-7860-01A-11D-2395-08 TCGA-HT-7860-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx d9a21c24-8e23-47d9-addd-e601b3f2e2c9 b10e61aa-2481-454d-bcfd-308c8fbc82bc CAAATCACGACGTTTCTCTCC 0.597 7 33 MAST1 22983 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 19 12977541 12977541 + Missense_Mutation SNP C C T TCGA-HT-7860-01A-11D-2395-08 TCGA-HT-7860-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx d9a21c24-8e23-47d9-addd-e601b3f2e2c9 b10e61aa-2481-454d-bcfd-308c8fbc82bc CGTGGAAATCCGCCAGTTCTC 0.622 13 35 MED26 9441 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 19 16687579 16687579 + Silent SNP C C T TCGA-HT-7860-01A-11D-2395-08 TCGA-HT-7860-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx d9a21c24-8e23-47d9-addd-e601b3f2e2c9 b10e61aa-2481-454d-bcfd-308c8fbc82bc CCTTGCAGCCCGGCCCCGCCA 0.706 13 27 ACTN4 81 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 19 39212280 39212280 + Missense_Mutation SNP C C T TCGA-HT-7860-01A-11D-2395-08 TCGA-HT-7860-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx d9a21c24-8e23-47d9-addd-e601b3f2e2c9 b10e61aa-2481-454d-bcfd-308c8fbc82bc GACCTGGCTGCGCACCAGGAC 0.617 32 106 IRGC 56269 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 19 44222962 44222962 + Silent SNP G G A TCGA-HT-7860-01A-11D-2395-08 TCGA-HT-7860-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx d9a21c24-8e23-47d9-addd-e601b3f2e2c9 b10e61aa-2481-454d-bcfd-308c8fbc82bc ACCCTGGCGCGGCTCTCACGG 0.682 51 174 RUVBL2 10856 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 19 49518835 49518835 + Missense_Mutation SNP G G A TCGA-HT-7860-01A-11D-2395-08 TCGA-HT-7860-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx d9a21c24-8e23-47d9-addd-e601b3f2e2c9 b10e61aa-2481-454d-bcfd-308c8fbc82bc CCAGGGTACAGAAGTGCAGGT 0.602 42 124 MYBPC2 4606 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 19 50939931 50939931 + Missense_Mutation SNP C C T TCGA-HT-7860-01A-11D-2395-08 TCGA-HT-7860-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx d9a21c24-8e23-47d9-addd-e601b3f2e2c9 b10e61aa-2481-454d-bcfd-308c8fbc82bc TGGGTATTACCGCCTCGAGGT 0.612 50 175 NLRP5 126206 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 19 56539531 56539531 + Silent SNP C C T TCGA-HT-7860-01A-11D-2395-08 TCGA-HT-7860-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx d9a21c24-8e23-47d9-addd-e601b3f2e2c9 b10e61aa-2481-454d-bcfd-308c8fbc82bc TGAGCGAAGACGTAAGGAGGC 0.552 37 118 GRHL3 57822 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 1 24671385 24671385 + Splice_Site SNP A A C TCGA-HT-7860-01A-11D-2395-08 TCGA-HT-7860-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx d9a21c24-8e23-47d9-addd-e601b3f2e2c9 b10e61aa-2481-454d-bcfd-308c8fbc82bc ACTTCATTGCAGGCAGCCCCC 0.572 25 55 WDR65 149465 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 1 43675514 43675514 + Missense_Mutation SNP G G A TCGA-HT-7860-01A-11D-2395-08 TCGA-HT-7860-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx d9a21c24-8e23-47d9-addd-e601b3f2e2c9 b10e61aa-2481-454d-bcfd-308c8fbc82bc GGAACCATTCGTGCCATGAAG 0.552 38 67 TTC4 7268 hgsc.bcm.edu;ucsc.edu 37 1 55181589 55181589 + Missense_Mutation SNP A A G TCGA-HT-7860-01A-11D-2395-08 TCGA-HT-7860-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx d9a21c24-8e23-47d9-addd-e601b3f2e2c9 b10e61aa-2481-454d-bcfd-308c8fbc82bc GCTATGGAACAACCTGGGCAG 0.642 8 17 LCE2A 353139 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 1 152671462 152671462 + Nonsense_Mutation SNP C C T TCGA-HT-7860-01A-11D-2395-08 TCGA-HT-7860-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx d9a21c24-8e23-47d9-addd-e601b3f2e2c9 b10e61aa-2481-454d-bcfd-308c8fbc82bc TCCAAAGTGCCGACCTCAGTG 0.637 71 128 DDR2 4921 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 1 162746049 162746049 + Silent SNP C C A TCGA-HT-7860-01A-11D-2395-08 TCGA-HT-7860-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx d9a21c24-8e23-47d9-addd-e601b3f2e2c9 b10e61aa-2481-454d-bcfd-308c8fbc82bc ACTACACAATCAAGATAGCTG 0.488 72 172 PTPRC 5788 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 1 198687263 198687263 + Silent SNP A A T TCGA-HT-7860-01A-11D-2395-08 TCGA-HT-7860-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx d9a21c24-8e23-47d9-addd-e601b3f2e2c9 b10e61aa-2481-454d-bcfd-308c8fbc82bc CCATGACATCAGATAATAGTA 0.388 26 40 PLXNA2 5362 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 1 208272302 208272302 + Missense_Mutation SNP C C A TCGA-HT-7860-01A-11D-2395-08 TCGA-HT-7860-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx d9a21c24-8e23-47d9-addd-e601b3f2e2c9 b10e61aa-2481-454d-bcfd-308c8fbc82bc GGCATTTGTCCCTGCGGGAGC 0.557 13 20 BPIFB3 359710 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 20 31654682 31654682 + Splice_Site SNP A A G TCGA-HT-7860-01A-11D-2395-08 TCGA-HT-7860-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx d9a21c24-8e23-47d9-addd-e601b3f2e2c9 b10e61aa-2481-454d-bcfd-308c8fbc82bc TTGCTCCCTGAGGTGAGTGAC 0.522 27 116 PFDN4 5203 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 20 52831957 52831957 + Missense_Mutation SNP A A C TCGA-HT-7860-01A-11D-2395-08 TCGA-HT-7860-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx d9a21c24-8e23-47d9-addd-e601b3f2e2c9 b10e61aa-2481-454d-bcfd-308c8fbc82bc GAAGAAACGCAAGAAATGTTA 0.313 14 47 FAM210B 116151 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 20 54941327 54941327 + Missense_Mutation SNP C C T TCGA-HT-7860-01A-11D-2395-08 TCGA-HT-7860-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx d9a21c24-8e23-47d9-addd-e601b3f2e2c9 b10e61aa-2481-454d-bcfd-308c8fbc82bc TTTAAACCTCCAGCTGCAAAA 0.398 24 100 HRH3 11255 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 20 60793682 60793682 + Silent SNP G G A TCGA-HT-7860-01A-11D-2395-08 TCGA-HT-7860-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx d9a21c24-8e23-47d9-addd-e601b3f2e2c9 b10e61aa-2481-454d-bcfd-308c8fbc82bc CTGTCAGCACGTAGGGTACAT 0.632 16 55 TMPRSS3 64699 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 21 43810090 43810090 + Missense_Mutation SNP T T C TCGA-HT-7860-01A-11D-2395-08 TCGA-HT-7860-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx d9a21c24-8e23-47d9-addd-e601b3f2e2c9 b10e61aa-2481-454d-bcfd-308c8fbc82bc ATGACGATGATTGGAAAAAAC 0.433 28 66 C2orf71 0 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 2 29295046 29295046 + Silent SNP G G A TCGA-HT-7860-01A-11D-2395-08 TCGA-HT-7860-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx d9a21c24-8e23-47d9-addd-e601b3f2e2c9 b10e61aa-2481-454d-bcfd-308c8fbc82bc TGCCTTGTTCGTCCTCAGGAT 0.532 45 99 EHBP1 23301 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 2 63182658 63182658 + Silent SNP T T C TCGA-HT-7860-01A-11D-2395-08 TCGA-HT-7860-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx d9a21c24-8e23-47d9-addd-e601b3f2e2c9 b10e61aa-2481-454d-bcfd-308c8fbc82bc TAAGCATCGATTGTTATCTAG 0.358 7 17 ZNF638 27332 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 2 71576931 71576931 + Missense_Mutation SNP T T A TCGA-HT-7860-01A-11D-2395-08 TCGA-HT-7860-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx d9a21c24-8e23-47d9-addd-e601b3f2e2c9 b10e61aa-2481-454d-bcfd-308c8fbc82bc CAATAATCGGTCCTTTTTCTC 0.428 62 133 SNRNP200 23020 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 2 96962796 96962796 + Missense_Mutation SNP C C T TCGA-HT-7860-01A-11D-2395-08 TCGA-HT-7860-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx d9a21c24-8e23-47d9-addd-e601b3f2e2c9 b10e61aa-2481-454d-bcfd-308c8fbc82bc AGCTTTTCCACTGGAAGCAGT 0.483 32 46 CNGA3 1261 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 2 98999852 98999852 + Splice_Site SNP G G A TCGA-HT-7860-01A-11D-2395-08 TCGA-HT-7860-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx d9a21c24-8e23-47d9-addd-e601b3f2e2c9 b10e61aa-2481-454d-bcfd-308c8fbc82bc TTCCCGCAGCGCCTGGCCCCT 0.587 22 63 TTN 7273 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 2 179577501 179577501 + Nonsense_Mutation SNP G G T TCGA-HT-7860-01A-11D-2395-08 TCGA-HT-7860-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx d9a21c24-8e23-47d9-addd-e601b3f2e2c9 b10e61aa-2481-454d-bcfd-308c8fbc82bc TCCACTTTGTGATGTATCTAC 0.423 13 39 UGT1A4 54657 hgsc.bcm.edu;ucsc.edu 37 2 234627498 234627498 + Missense_Mutation SNP G G A rs149314940 TCGA-HT-7860-01A-11D-2395-08 TCGA-HT-7860-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx d9a21c24-8e23-47d9-addd-e601b3f2e2c9 b10e61aa-2481-454d-bcfd-308c8fbc82bc CCCCTGCCGCGGCTGGCCACA 0.627 24 67 IQCF1 132141 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 3 51929217 51929217 + Missense_Mutation SNP G G A TCGA-HT-7860-01A-11D-2395-08 TCGA-HT-7860-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx d9a21c24-8e23-47d9-addd-e601b3f2e2c9 b10e61aa-2481-454d-bcfd-308c8fbc82bc AGTATCAGCCGCCACCAGCAC 0.637 59 86 ST3GAL6 10402 hgsc.bcm.edu;broad.mit.edu 37 3 98503881 98503881 + Missense_Mutation SNP T T A TCGA-HT-7860-01A-11D-2395-08 TCGA-HT-7860-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx d9a21c24-8e23-47d9-addd-e601b3f2e2c9 b10e61aa-2481-454d-bcfd-308c8fbc82bc GATGTAATAATAAGGTAAATA 0.348 14 24 TRIM42 287015 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 3 140401985 140401985 + Silent SNP C C T TCGA-HT-7860-01A-11D-2395-08 TCGA-HT-7860-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx d9a21c24-8e23-47d9-addd-e601b3f2e2c9 b10e61aa-2481-454d-bcfd-308c8fbc82bc TCAGCGCCATCGCCAAGTTCA 0.542 24 59 PCDH7 5099 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 4 30725552 30725552 + Missense_Mutation SNP C C A TCGA-HT-7860-01A-11D-2395-08 TCGA-HT-7860-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx d9a21c24-8e23-47d9-addd-e601b3f2e2c9 b10e61aa-2481-454d-bcfd-308c8fbc82bc CTCTGGTGCACGTGTTTGTCA 0.493 24 34 SPEF2 79925 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 5 35697831 35697831 + Silent SNP T T C TCGA-HT-7860-01A-11D-2395-08 TCGA-HT-7860-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx d9a21c24-8e23-47d9-addd-e601b3f2e2c9 b10e61aa-2481-454d-bcfd-308c8fbc82bc ATCAGAACAGTTGCTGAAGAA 0.353 28 50 SRFBP1 153443 hgsc.bcm.edu;ucsc.edu 37 5 121355961 121355961 + Silent SNP G G C rs55708726 by1000genomes TCGA-HT-7860-01A-11D-2395-08 TCGA-HT-7860-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx d9a21c24-8e23-47d9-addd-e601b3f2e2c9 b10e61aa-2481-454d-bcfd-308c8fbc82bc AAATATTGGCGAAGAAACCAA 0.343 25 57 APBB3 10307 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 5 139941733 139941733 + Missense_Mutation SNP T T A TCGA-HT-7860-01A-11D-2395-08 TCGA-HT-7860-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx d9a21c24-8e23-47d9-addd-e601b3f2e2c9 b10e61aa-2481-454d-bcfd-308c8fbc82bc CACCAGAGGCTGGCAGTGGAT 0.602 28 59 HAVCR1 26762 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 5 156476111 156476111 + Missense_Mutation SNP G G A TCGA-HT-7860-01A-11D-2395-08 TCGA-HT-7860-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx d9a21c24-8e23-47d9-addd-e601b3f2e2c9 b10e61aa-2481-454d-bcfd-308c8fbc82bc CTGCAGTGTCGTAGGGTGGGT 0.483 53 103 TFAP2D 83741 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 6 50683145 50683145 + Missense_Mutation SNP C C A TCGA-HT-7860-01A-11D-2395-08 TCGA-HT-7860-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx d9a21c24-8e23-47d9-addd-e601b3f2e2c9 b10e61aa-2481-454d-bcfd-308c8fbc82bc CTGCACAATGCGCGGGCGCTC 0.622 60 113 MACC1 346389 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 7 20198442 20198442 + Silent SNP G G T rs149661432 by1000genomes TCGA-HT-7860-01A-11D-2395-08 TCGA-HT-7860-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx d9a21c24-8e23-47d9-addd-e601b3f2e2c9 b10e61aa-2481-454d-bcfd-308c8fbc82bc GCAGATTCGAGAGTCTTTTTA 0.393 58 153 KEL 3792 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 7 142658923 142658923 + Missense_Mutation SNP G G A TCGA-HT-7860-01A-11D-2395-08 TCGA-HT-7860-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx d9a21c24-8e23-47d9-addd-e601b3f2e2c9 b10e61aa-2481-454d-bcfd-308c8fbc82bc GCCTGGCTGCGTTCCCTCGGC 0.542 122 393 NOBOX 135935 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 7 144096940 144096940 + Missense_Mutation SNP C C T TCGA-HT-7860-01A-11D-2395-08 TCGA-HT-7860-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx d9a21c24-8e23-47d9-addd-e601b3f2e2c9 b10e61aa-2481-454d-bcfd-308c8fbc82bc CTTGGCCCGGCGATTCTGGAA 0.542 10 26 MSR1 4481 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 8 16026364 16026364 + Nonsense_Mutation SNP C C T TCGA-HT-7860-01A-11D-2395-08 TCGA-HT-7860-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx d9a21c24-8e23-47d9-addd-e601b3f2e2c9 b10e61aa-2481-454d-bcfd-308c8fbc82bc CTTCGTTTCCCACTTCAGGAG 0.388 27 56 PSD3 23362 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 8 18490301 18490301 + Silent SNP T T C rs142080320 TCGA-HT-7860-01A-11D-2395-08 TCGA-HT-7860-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx d9a21c24-8e23-47d9-addd-e601b3f2e2c9 b10e61aa-2481-454d-bcfd-308c8fbc82bc GAGACTTTTTTTTCTCTTCAT 0.358 21 25 TNFRSF10C 8794 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 8 22969288 22969288 + Missense_Mutation SNP T T C TCGA-HT-7860-01A-11D-2395-08 TCGA-HT-7860-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx d9a21c24-8e23-47d9-addd-e601b3f2e2c9 b10e61aa-2481-454d-bcfd-308c8fbc82bc CAGCAGACAGTGGCCCCACAG 0.507 30 59 ARSD 414 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 X 2836028 2836028 + Missense_Mutation SNP G G A TCGA-HT-7860-01A-11D-2395-08 TCGA-HT-7860-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx d9a21c24-8e23-47d9-addd-e601b3f2e2c9 b10e61aa-2481-454d-bcfd-308c8fbc82bc GACTGCTCTCGCGGAGACAGA 0.622 9 23 MAGEB2 4113 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 X 30237647 30237647 + Missense_Mutation SNP C C T TCGA-HT-7860-01A-11D-2395-08 TCGA-HT-7860-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx d9a21c24-8e23-47d9-addd-e601b3f2e2c9 b10e61aa-2481-454d-bcfd-308c8fbc82bc GAAGAGAAAGCCGGAGTCTGA 0.498 25 47 DDX26B 203522 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 X 134715064 134715064 + Missense_Mutation SNP G G A rs143980255 TCGA-HT-7860-01A-11D-2395-08 TCGA-HT-7860-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx d9a21c24-8e23-47d9-addd-e601b3f2e2c9 b10e61aa-2481-454d-bcfd-308c8fbc82bc CAAGGAAGCCGCAAGGTAGGT 0.383 8 13 AVPR2 554 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 X 153172155 153172155 + Silent SNP C C T TCGA-HT-7860-01A-11D-2395-08 TCGA-HT-7860-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx d9a21c24-8e23-47d9-addd-e601b3f2e2c9 b10e61aa-2481-454d-bcfd-308c8fbc82bc CCGCCAGCTCCTCCCTGGCCA 0.642 20 72 PKD1L2 114780 broad.mit.edu;ucsc.edu 37 16 81171126 81171126 + RNA SNP C C T TCGA-HT-7860-01A-11D-2395-08 TCGA-HT-7860-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx d9a21c24-8e23-47d9-addd-e601b3f2e2c9 b10e61aa-2481-454d-bcfd-308c8fbc82bc AAGAAAGCAGCGAATCCCAGC 0.577 7 10 MED14 9282 broad.mit.edu;ucsc.edu 37 X 40518771 40518771 + Missense_Mutation SNP T T C TCGA-HT-7860-01A-11D-2395-08 TCGA-HT-7860-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx d9a21c24-8e23-47d9-addd-e601b3f2e2c9 b10e61aa-2481-454d-bcfd-308c8fbc82bc AAGCGTTTGGTTGGTTTTGGG 0.398 37 63 PCDHGC5 56097 broad.mit.edu;ucsc.edu 37 5 140869027 140869027 + Missense_Mutation SNP T T C TCGA-HT-7860-01A-11D-2395-08 TCGA-HT-7860-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx d9a21c24-8e23-47d9-addd-e601b3f2e2c9 b10e61aa-2481-454d-bcfd-308c8fbc82bc GAATGGGCGCTATTTTTCCCT 0.562 57 58 GBP1P1 400759 broad.mit.edu;ucsc.edu 37 1 89889882 89889882 + RNA SNP A A G TCGA-HT-7860-01A-11D-2395-08 TCGA-HT-7860-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx d9a21c24-8e23-47d9-addd-e601b3f2e2c9 b10e61aa-2481-454d-bcfd-308c8fbc82bc GCAAAGAAAGAATGAGCAGAT 0.453 166 343 MYH8 4626 broad.mit.edu;ucsc.edu 37 17 10318643 10318643 + Missense_Mutation SNP G G C TCGA-HT-7860-01A-11D-2395-08 TCGA-HT-7860-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx d9a21c24-8e23-47d9-addd-e601b3f2e2c9 b10e61aa-2481-454d-bcfd-308c8fbc82bc CACAGTTTTGGCATTGCCAAA 0.483 59 122 PKD1L2 114780 broad.mit.edu;ucsc.edu 37 16 81155301 81155301 + RNA SNP C C T TCGA-HT-7860-01A-11D-2395-08 TCGA-HT-7860-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx d9a21c24-8e23-47d9-addd-e601b3f2e2c9 b10e61aa-2481-454d-bcfd-308c8fbc82bc TGCAGGGCCGCGTGCGTAAAA 0.597 4 13 PPIP5K2 23262 broad.mit.edu;ucsc.edu 37 5 102513667 102513667 + Missense_Mutation SNP C C G TCGA-HT-7860-01A-11D-2395-08 TCGA-HT-7860-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx d9a21c24-8e23-47d9-addd-e601b3f2e2c9 b10e61aa-2481-454d-bcfd-308c8fbc82bc TGGATATAGACCAGCTTCCAG 0.378 23 82 HSPA8 3312 broad.mit.edu;ucsc.edu 37 11 122928498 122928498 + Missense_Mutation SNP C C G TCGA-HT-7860-01A-11D-2395-08 TCGA-HT-7860-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx d9a21c24-8e23-47d9-addd-e601b3f2e2c9 b10e61aa-2481-454d-bcfd-308c8fbc82bc GGAGGAGCTCCACCACCAGGA 0.512 51 101 GPR124 25960 broad.mit.edu;ucsc.edu 37 8 37686441 37686441 + Missense_Mutation SNP C C T TCGA-HT-7860-01A-11D-2395-08 TCGA-HT-7860-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx d9a21c24-8e23-47d9-addd-e601b3f2e2c9 b10e61aa-2481-454d-bcfd-308c8fbc82bc ACAGTGCAGCCGGGCGCCTTC 0.682 40 70 PWWP2A 114825 broad.mit.edu;hgsc.bcm.edu 37 5 159546021 159546022 + Frame_Shift_Ins INS - - G TCGA-HT-7860-01A-11D-2395-08 TCGA-HT-7860-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx d9a21c24-8e23-47d9-addd-e601b3f2e2c9 b10e61aa-2481-454d-bcfd-308c8fbc82bc CCTCGGGAGCCGGGGGCTGCTC 0.748 14 36 NF1 4763 broad.mit.edu;hgsc.bcm.edu 37 17 29483060 29483064 + Frame_Shift_Del DEL GGAAT GGAAT - TCGA-HT-7860-01A-11D-2395-08 TCGA-HT-7860-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx d9a21c24-8e23-47d9-addd-e601b3f2e2c9 b10e61aa-2481-454d-bcfd-308c8fbc82bc AGCACAACAAGGAATGTCTAATCAA 0.332 13 32 KANSL1 284058 broad.mit.edu;hgsc.bcm.edu 37 17 44110778 44110780 + In_Frame_Del DEL CTC CTC - TCGA-HT-7860-01A-11D-2395-08 TCGA-HT-7860-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx d9a21c24-8e23-47d9-addd-e601b3f2e2c9 b10e61aa-2481-454d-bcfd-308c8fbc82bc CCTCTTCATTCTCCTCATCAGGA 0.483 19 68