Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_file Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID ref_context gc_content t_alt_count t_ref_count MAB21L1 4081 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 13 36049234 36049234 + Missense_Mutation SNP C C G TCGA-HT-7873-01B-11D-2395-08 TCGA-HT-7873-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx cc65ab63-a507-4dbf-becf-93fc7d1bea3d b7ec26c5-3d2d-4164-9de2-7202c49e4429 GTCAGGATCTCTCTTGCCAGT 0.433 37 87 ADCY4 196883 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 14 24787720 24787720 + Missense_Mutation SNP G G A TCGA-HT-7873-01B-11D-2395-08 TCGA-HT-7873-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx cc65ab63-a507-4dbf-becf-93fc7d1bea3d b7ec26c5-3d2d-4164-9de2-7202c49e4429 ATGACACCCCGGCTGTAGCAG 0.562 27 63 MYO9A 4649 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 15 72172772 72172772 + Silent SNP G G A TCGA-HT-7873-01B-11D-2395-08 TCGA-HT-7873-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx cc65ab63-a507-4dbf-becf-93fc7d1bea3d b7ec26c5-3d2d-4164-9de2-7202c49e4429 CCAAAGCCACGTTGCTAATCT 0.438 48 109 ALDH1A3 220 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 15 101425495 101425495 + Silent SNP C C T rs58142816 byFrequency TCGA-HT-7873-01B-11D-2395-08 TCGA-HT-7873-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx cc65ab63-a507-4dbf-becf-93fc7d1bea3d b7ec26c5-3d2d-4164-9de2-7202c49e4429 ATGAATGGCACGAATCCAAGA 0.348 20 46 NFAT5 10725 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 16 69726213 69726213 + Missense_Mutation SNP G G A TCGA-HT-7873-01B-11D-2395-08 TCGA-HT-7873-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx cc65ab63-a507-4dbf-becf-93fc7d1bea3d b7ec26c5-3d2d-4164-9de2-7202c49e4429 GTTATCTTCAGTTTTATTTTC 0.448 44 87 LPO 4025 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 17 56342147 56342147 + Missense_Mutation SNP C C T TCGA-HT-7873-01B-11D-2395-08 TCGA-HT-7873-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx cc65ab63-a507-4dbf-becf-93fc7d1bea3d b7ec26c5-3d2d-4164-9de2-7202c49e4429 TGGATACCCCCATATCAAGGC 0.478 35 49 PCSK4 54760 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 19 1481915 1481915 + Missense_Mutation SNP C C T rs145279692 TCGA-HT-7873-01B-11D-2395-08 TCGA-HT-7873-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx cc65ab63-a507-4dbf-becf-93fc7d1bea3d b7ec26c5-3d2d-4164-9de2-7202c49e4429 GGCTGGGCAGCGGTGGTGGGG 0.711 9 17 ZNF256 10172 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 19 58453810 58453810 + Silent SNP T T C TCGA-HT-7873-01B-11D-2395-08 TCGA-HT-7873-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx cc65ab63-a507-4dbf-becf-93fc7d1bea3d b7ec26c5-3d2d-4164-9de2-7202c49e4429 GTTTCCTACATGCCCCGTCTG 0.458 52 98 KLHDC7A 127707 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 1 18809173 18809173 + Silent SNP G G A TCGA-HT-7873-01B-11D-2395-08 TCGA-HT-7873-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx cc65ab63-a507-4dbf-becf-93fc7d1bea3d b7ec26c5-3d2d-4164-9de2-7202c49e4429 ACCCGCTCACGGGGATCTGGA 0.667 15 30 SLC9A1 6548 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 1 27440680 27440680 + Silent SNP G G A TCGA-HT-7873-01B-11D-2395-08 TCGA-HT-7873-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx cc65ab63-a507-4dbf-becf-93fc7d1bea3d b7ec26c5-3d2d-4164-9de2-7202c49e4429 GGGGTGTCTCGCCTACACCCT 0.617 32 42 CYP4B1 1580 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 1 47279204 47279204 + Silent SNP C C T rs147120348 TCGA-HT-7873-01B-11D-2395-08 TCGA-HT-7873-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx cc65ab63-a507-4dbf-becf-93fc7d1bea3d b7ec26c5-3d2d-4164-9de2-7202c49e4429 ACATCTTCTGCGATGTGGGTC 0.582 31 39 LPHN2 23266 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 1 82434955 82434955 + Missense_Mutation SNP T T C TCGA-HT-7873-01B-11D-2395-08 TCGA-HT-7873-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx cc65ab63-a507-4dbf-becf-93fc7d1bea3d b7ec26c5-3d2d-4164-9de2-7202c49e4429 CATCTTCACCTTCTGCTTTTT 0.393 47 131 ETV3 2117 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 1 157105467 157105467 + Missense_Mutation SNP T T A TCGA-HT-7873-01B-11D-2395-08 TCGA-HT-7873-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx cc65ab63-a507-4dbf-becf-93fc7d1bea3d b7ec26c5-3d2d-4164-9de2-7202c49e4429 TGGGGATGACTCTGTTTTGTA 0.527 44 73 SIPA1L2 57568 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 1 232538163 232538163 + Missense_Mutation SNP C C T TCGA-HT-7873-01B-11D-2395-08 TCGA-HT-7873-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx cc65ab63-a507-4dbf-becf-93fc7d1bea3d b7ec26c5-3d2d-4164-9de2-7202c49e4429 CTGGAGTTGTCGAAGAATTAA 0.393 25 31 SSTR4 6754 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 20 23017075 23017075 + Missense_Mutation SNP C C T TCGA-HT-7873-01B-11D-2395-08 TCGA-HT-7873-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx cc65ab63-a507-4dbf-becf-93fc7d1bea3d b7ec26c5-3d2d-4164-9de2-7202c49e4429 CGACAACTTCCGCCGATTCTT 0.587 46 57 TANC1 85461 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 2 160050870 160050870 + Missense_Mutation SNP G G A TCGA-HT-7873-01B-11D-2395-08 TCGA-HT-7873-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx cc65ab63-a507-4dbf-becf-93fc7d1bea3d b7ec26c5-3d2d-4164-9de2-7202c49e4429 TGGCCACGAGGAAGTTGTCAC 0.552 26 48 IDH1 3417 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 2 209113112 209113112 + Missense_Mutation SNP C C T rs121913500 TCGA-HT-7873-01B-11D-2395-08 TCGA-HT-7873-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx cc65ab63-a507-4dbf-becf-93fc7d1bea3d b7ec26c5-3d2d-4164-9de2-7202c49e4429 ATAAGCATGACGACCTATGAT 0.393 21 62 FEV 54738 hgsc.bcm.edu;broad.mit.edu 37 2 219846970 219846970 + Missense_Mutation SNP G G C TCGA-HT-7873-01B-11D-2395-08 TCGA-HT-7873-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx cc65ab63-a507-4dbf-becf-93fc7d1bea3d b7ec26c5-3d2d-4164-9de2-7202c49e4429 AGCTGGATCTGTCCGCTGCCT 0.697 8 6 SP140 11262 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 2 231150502 231150502 + Missense_Mutation SNP G G A TCGA-HT-7873-01B-11D-2395-08 TCGA-HT-7873-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx cc65ab63-a507-4dbf-becf-93fc7d1bea3d b7ec26c5-3d2d-4164-9de2-7202c49e4429 GGTCTCCAGTGAAAAGAAGGC 0.458 58 93 CADM2 253559 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 3 85984926 85984926 + Nonsense_Mutation SNP C C G TCGA-HT-7873-01B-11D-2395-08 TCGA-HT-7873-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx cc65ab63-a507-4dbf-becf-93fc7d1bea3d b7ec26c5-3d2d-4164-9de2-7202c49e4429 GATACACCATCAGTTAAGATT 0.328 61 90 ALDH7A1 501 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 5 125885898 125885898 + Missense_Mutation SNP G G A TCGA-HT-7873-01B-11D-2395-08 TCGA-HT-7873-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx cc65ab63-a507-4dbf-becf-93fc7d1bea3d b7ec26c5-3d2d-4164-9de2-7202c49e4429 CCAAGCCAGCGAAAGATTCTG 0.348 23 66 MRAP2 112609 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 6 84799071 84799071 + Silent SNP G G A TCGA-HT-7873-01B-11D-2395-08 TCGA-HT-7873-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx cc65ab63-a507-4dbf-becf-93fc7d1bea3d b7ec26c5-3d2d-4164-9de2-7202c49e4429 GGCTCATGAAGTTTGACATCC 0.493 44 62 ABCA13 154664 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 7 48335325 48335325 + Missense_Mutation SNP A A C TCGA-HT-7873-01B-11D-2395-08 TCGA-HT-7873-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx cc65ab63-a507-4dbf-becf-93fc7d1bea3d b7ec26c5-3d2d-4164-9de2-7202c49e4429 TCCTCGCCGAATCAGCTAAAT 0.393 45 96 TRPA1 8989 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 8 72946552 72946552 + Missense_Mutation SNP C C A TCGA-HT-7873-01B-11D-2395-08 TCGA-HT-7873-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx cc65ab63-a507-4dbf-becf-93fc7d1bea3d b7ec26c5-3d2d-4164-9de2-7202c49e4429 CAACTGTAGACCTCAACAAAG 0.294 26 37 WWP1 11059 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 8 87443690 87443690 + Silent SNP A A C TCGA-HT-7873-01B-11D-2395-08 TCGA-HT-7873-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx cc65ab63-a507-4dbf-becf-93fc7d1bea3d b7ec26c5-3d2d-4164-9de2-7202c49e4429 ACACAAAAACAACCCAGTGGG 0.348 24 79 PPP1R26 9858 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 9 138379182 138379182 + Silent SNP C C T TCGA-HT-7873-01B-11D-2395-08 TCGA-HT-7873-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx cc65ab63-a507-4dbf-becf-93fc7d1bea3d b7ec26c5-3d2d-4164-9de2-7202c49e4429 CCAGGAGCACCAGCGGCGGTG 0.652 63 55 A1CF 29974 broad.mit.edu;hgsc.bcm.edu 37 10 52596001 52596002 + Frame_Shift_Ins INS - - T TCGA-HT-7873-01B-11D-2395-08 TCGA-HT-7873-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx cc65ab63-a507-4dbf-becf-93fc7d1bea3d b7ec26c5-3d2d-4164-9de2-7202c49e4429 TCTCTTTTTGGTTTTTGGGATG 0.446 39 104 TP53 7157 broad.mit.edu;hgsc.bcm.edu 37 17 7573996 7574003 + Frame_Shift_Del DEL AGCTCTCG AGCTCTCG - rs121912662 TCGA-HT-7873-01B-11D-2395-08 TCGA-HT-7873-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx cc65ab63-a507-4dbf-becf-93fc7d1bea3d b7ec26c5-3d2d-4164-9de2-7202c49e4429 GGCCTCATTCAGCTCTCGGAACATCTCG 0.562 16 10 ATRX 546 broad.mit.edu;hgsc.bcm.edu 37 X 76938029 76938029 + Frame_Shift_Del DEL G G - TCGA-HT-7873-01B-11D-2395-08 TCGA-HT-7873-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx cc65ab63-a507-4dbf-becf-93fc7d1bea3d b7ec26c5-3d2d-4164-9de2-7202c49e4429 TTAGGAAGTCGATCTCTTAAT 0.418 154 37