Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_file Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID ref_context gc_content t_alt_count t_ref_count MYOF 26509 hgsc.bcm.edu;broad.mit.edu 37 10 95072807 95072807 + Silent SNP G G A TCGA-HT-7874-01A-11D-2395-08 TCGA-HT-7874-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx 0c6a82e9-3ef8-4f1f-89ba-b936f1ebe17b 159201aa-9f74-4b4a-ba23-b6863a698317 CTTTCTCTGCGTAGCATGGCC 0.473 30 471 EP400 57634 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 12 132466834 132466834 + Silent SNP G G A TCGA-HT-7874-01A-11D-2395-08 TCGA-HT-7874-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx 0c6a82e9-3ef8-4f1f-89ba-b936f1ebe17b 159201aa-9f74-4b4a-ba23-b6863a698317 TTGCACAGCAGCCGCAAGTGG 0.657 20 101 CCDC97 90324 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 19 41826329 41826329 + Missense_Mutation SNP A A G TCGA-HT-7874-01A-11D-2395-08 TCGA-HT-7874-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx 0c6a82e9-3ef8-4f1f-89ba-b936f1ebe17b 159201aa-9f74-4b4a-ba23-b6863a698317 CACCAGCCGCATGCACCAGCG 0.637 10 47 CLCA2 9635 hgsc.bcm.edu;broad.mit.edu 37 1 86919122 86919122 + Silent SNP C C T TCGA-HT-7874-01A-11D-2395-08 TCGA-HT-7874-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx 0c6a82e9-3ef8-4f1f-89ba-b936f1ebe17b 159201aa-9f74-4b4a-ba23-b6863a698317 GGGGCTTTAGCCGAGTCAGCT 0.463 4 52 BTG3 10950 hgsc.bcm.edu;broad.mit.edu 37 21 18966541 18966541 + Missense_Mutation SNP G G A TCGA-HT-7874-01A-11D-2395-08 TCGA-HT-7874-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx 0c6a82e9-3ef8-4f1f-89ba-b936f1ebe17b 159201aa-9f74-4b4a-ba23-b6863a698317 ATAACCAAATGGAACAGGAGG 0.458 5 71 SAMM50 25813 hgsc.bcm.edu;broad.mit.edu 37 22 44377307 44377307 + Missense_Mutation SNP C C T TCGA-HT-7874-01A-11D-2395-08 TCGA-HT-7874-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx 0c6a82e9-3ef8-4f1f-89ba-b936f1ebe17b 159201aa-9f74-4b4a-ba23-b6863a698317 AATGTTGGTACCCATTGGTGA 0.388 6 84 IDH1 3417 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 2 209113112 209113112 + Missense_Mutation SNP C C T rs121913500 TCGA-HT-7874-01A-11D-2395-08 TCGA-HT-7874-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx 0c6a82e9-3ef8-4f1f-89ba-b936f1ebe17b 159201aa-9f74-4b4a-ba23-b6863a698317 ATAAGCATGACGACCTATGAT 0.393 17 85 PIK3CA 5290 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 3 178952073 178952073 + Missense_Mutation SNP T T C TCGA-HT-7874-01A-11D-2395-08 TCGA-HT-7874-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx 0c6a82e9-3ef8-4f1f-89ba-b936f1ebe17b 159201aa-9f74-4b4a-ba23-b6863a698317 ATGAAACAAATGAATGATGCA 0.368 19 87 KDR 3791 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 4 55960997 55960997 + Missense_Mutation SNP C C G TCGA-HT-7874-01A-11D-2395-08 TCGA-HT-7874-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx 0c6a82e9-3ef8-4f1f-89ba-b936f1ebe17b 159201aa-9f74-4b4a-ba23-b6863a698317 CACTGAGGGACTTCTCCTCCA 0.522 27 128 UGT2B11 10720 hgsc.bcm.edu;broad.mit.edu 37 4 70070265 70070265 + Missense_Mutation SNP T T C TCGA-HT-7874-01A-11D-2395-08 TCGA-HT-7874-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx 0c6a82e9-3ef8-4f1f-89ba-b936f1ebe17b 159201aa-9f74-4b4a-ba23-b6863a698317 ATCAGGTTGATCAAAAAACAA 0.448 14 233 GAR1 54433 hgsc.bcm.edu;broad.mit.edu 37 4 110745576 110745576 + Missense_Mutation SNP A A G TCGA-HT-7874-01A-11D-2395-08 TCGA-HT-7874-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx 0c6a82e9-3ef8-4f1f-89ba-b936f1ebe17b 159201aa-9f74-4b4a-ba23-b6863a698317 TTAATCAGGGAGAGGACATTA 0.328 4 72 MROH2B 133558 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 5 41015559 41015559 + Missense_Mutation SNP C C A TCGA-HT-7874-01A-11D-2395-08 TCGA-HT-7874-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx 0c6a82e9-3ef8-4f1f-89ba-b936f1ebe17b 159201aa-9f74-4b4a-ba23-b6863a698317 ACCCTGCAGTCTTTCCACTTC 0.413 10 39 HNRNPA0 10949 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 5 137089402 137089402 + Missense_Mutation SNP G G T TCGA-HT-7874-01A-11D-2395-08 TCGA-HT-7874-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx 0c6a82e9-3ef8-4f1f-89ba-b936f1ebe17b 159201aa-9f74-4b4a-ba23-b6863a698317 CAAACTGCGAGAAGTGCTCGA 0.587 31 75 PCDHA3 56145 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 5 140181778 140181778 + Missense_Mutation SNP T T G rs140096953 by1000genomes TCGA-HT-7874-01A-11D-2395-08 TCGA-HT-7874-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx 0c6a82e9-3ef8-4f1f-89ba-b936f1ebe17b 159201aa-9f74-4b4a-ba23-b6863a698317 CAATGTCAGATCACTGCACAG 0.378 21 114 ARAP3 64411 hgsc.bcm.edu;broad.mit.edu 37 5 141035828 141035828 + Missense_Mutation SNP G G A TCGA-HT-7874-01A-11D-2395-08 TCGA-HT-7874-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx 0c6a82e9-3ef8-4f1f-89ba-b936f1ebe17b 159201aa-9f74-4b4a-ba23-b6863a698317 GGCCACTCCCGTTCTGGTTTA 0.522 7 117 HFE 3077 hgsc.bcm.edu;ucsc.edu 37 6 26094421 26094421 + Silent SNP C C T TCGA-HT-7874-01A-11D-2395-08 TCGA-HT-7874-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx 0c6a82e9-3ef8-4f1f-89ba-b936f1ebe17b 159201aa-9f74-4b4a-ba23-b6863a698317 CAGGAGGAGCCATGGGGCACT 0.502 10 61 IP6K3 117283 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 6 33690730 33690730 + Missense_Mutation SNP C C G TCGA-HT-7874-01A-11D-2395-08 TCGA-HT-7874-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx 0c6a82e9-3ef8-4f1f-89ba-b936f1ebe17b 159201aa-9f74-4b4a-ba23-b6863a698317 TCTGGTGGTTCCTGCCCATCA 0.602 12 74 BAZ1B 9031 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 7 72925148 72925148 + Missense_Mutation SNP G G A TCGA-HT-7874-01A-11D-2395-08 TCGA-HT-7874-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx 0c6a82e9-3ef8-4f1f-89ba-b936f1ebe17b 159201aa-9f74-4b4a-ba23-b6863a698317 GTCCAAATGCGCTCACTGTAC 0.463 34 96 LIMK1 3984 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 7 73513495 73513495 + Missense_Mutation SNP T T C TCGA-HT-7874-01A-11D-2395-08 TCGA-HT-7874-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx 0c6a82e9-3ef8-4f1f-89ba-b936f1ebe17b 159201aa-9f74-4b4a-ba23-b6863a698317 GCGTGGACTTTCAGTCTCCAT 0.677 33 150 ZCCHC5 203430 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 X 77913195 77913195 + Silent SNP A A T TCGA-HT-7874-01A-11D-2395-08 TCGA-HT-7874-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx 0c6a82e9-3ef8-4f1f-89ba-b936f1ebe17b 159201aa-9f74-4b4a-ba23-b6863a698317 TGAAGGTTAAAGTGTATTGCA 0.502 9 33 PCDH19 57526 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 X 99662610 99662610 + Missense_Mutation SNP T T C TCGA-HT-7874-01A-11D-2395-08 TCGA-HT-7874-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx 0c6a82e9-3ef8-4f1f-89ba-b936f1ebe17b 159201aa-9f74-4b4a-ba23-b6863a698317 GACCTTGCAGTGTGCCGGGAT 0.592 18 68 PRKCG 5582 broad.mit.edu;ucsc.edu 37 19 54395814 54395814 + Missense_Mutation SNP C C G TCGA-HT-7874-01A-11D-2395-08 TCGA-HT-7874-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx 0c6a82e9-3ef8-4f1f-89ba-b936f1ebe17b 159201aa-9f74-4b4a-ba23-b6863a698317 AGGTGTGGGACTGGGACCGGA 0.672 4 19 ZNF645 158506 broad.mit.edu;ucsc.edu 37 X 22291314 22291314 + Missense_Mutation SNP G G A TCGA-HT-7874-01A-11D-2395-08 TCGA-HT-7874-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx 0c6a82e9-3ef8-4f1f-89ba-b936f1ebe17b 159201aa-9f74-4b4a-ba23-b6863a698317 ATCTATGGGCGAATAATTCCG 0.383 23 93 DGKK 139189 broad.mit.edu;ucsc.edu 37 X 50127815 50127815 + RNA SNP A A C TCGA-HT-7874-01A-11D-2395-08 TCGA-HT-7874-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx 0c6a82e9-3ef8-4f1f-89ba-b936f1ebe17b 159201aa-9f74-4b4a-ba23-b6863a698317 TGCTTTCCTCATCCAGAGCTA 0.453 12 93