Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_file Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID ref_context gc_content t_alt_count t_ref_count FUT4 2526 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 11 94278274 94278274 + Silent SNP C C T TCGA-HT-7875-01A-11D-2395-08 TCGA-HT-7875-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx e4c82b3e-cb3a-4e3b-8805-09887d6cf639 3b415304-5b67-40c9-96a3-45e5731b194c CGGACTCGGACGTCTTTGTGC 0.647 26 64 TAS2R13 50838 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 12 11061883 11061883 + Silent SNP C C T TCGA-HT-7875-01A-11D-2395-08 TCGA-HT-7875-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx e4c82b3e-cb3a-4e3b-8805-09887d6cf639 3b415304-5b67-40c9-96a3-45e5731b194c AGATACTCGGCAGGGCACTTT 0.383 8 46 PRICKLE1 144165 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 12 42860093 42860093 + Silent SNP T T A TCGA-HT-7875-01A-11D-2395-08 TCGA-HT-7875-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx e4c82b3e-cb3a-4e3b-8805-09887d6cf639 3b415304-5b67-40c9-96a3-45e5731b194c ACCTCTGTCCTCCCAGGACCG 0.488 12 86 GPR68 8111 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 14 91700786 91700786 + Silent SNP C C T TCGA-HT-7875-01A-11D-2395-08 TCGA-HT-7875-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx e4c82b3e-cb3a-4e3b-8805-09887d6cf639 3b415304-5b67-40c9-96a3-45e5731b194c CCTGGTAGGACGCCAGCAGCA 0.652 10 33 ITGAL 3683 hgsc.bcm.edu;broad.mit.edu 37 16 30485546 30485546 + Missense_Mutation SNP C C T TCGA-HT-7875-01A-11D-2395-08 TCGA-HT-7875-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx e4c82b3e-cb3a-4e3b-8805-09887d6cf639 3b415304-5b67-40c9-96a3-45e5731b194c CCTGGACGTGCGGGGCGCGCG 0.706 7 16 MED1 5469 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 17 37565972 37565972 + Silent SNP T T A TCGA-HT-7875-01A-11D-2395-08 TCGA-HT-7875-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx e4c82b3e-cb3a-4e3b-8805-09887d6cf639 3b415304-5b67-40c9-96a3-45e5731b194c GATCAGTGTATGGATTTTCAT 0.433 20 86 SMURF2 64750 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 17 62574689 62574689 + Missense_Mutation SNP T T C TCGA-HT-7875-01A-11D-2395-08 TCGA-HT-7875-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx e4c82b3e-cb3a-4e3b-8805-09887d6cf639 3b415304-5b67-40c9-96a3-45e5731b194c TGCGTTGTCCTCTGTTCTGTA 0.373 16 29 TCEB3 6924 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 1 24080638 24080638 + Missense_Mutation SNP G G A TCGA-HT-7875-01A-11D-2395-08 TCGA-HT-7875-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx e4c82b3e-cb3a-4e3b-8805-09887d6cf639 3b415304-5b67-40c9-96a3-45e5731b194c ACTGGGCGCAGAATGAATTCC 0.448 45 8 ZNF683 257101 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 1 26691295 26691295 + Missense_Mutation SNP C C T TCGA-HT-7875-01A-11D-2395-08 TCGA-HT-7875-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx e4c82b3e-cb3a-4e3b-8805-09887d6cf639 3b415304-5b67-40c9-96a3-45e5731b194c TCCCACCGAGCGCTGGGGTGC 0.642 56 7 ARID4B 51742 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 1 235345098 235345098 + Missense_Mutation SNP T T C TCGA-HT-7875-01A-11D-2395-08 TCGA-HT-7875-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx e4c82b3e-cb3a-4e3b-8805-09887d6cf639 3b415304-5b67-40c9-96a3-45e5731b194c TCTGATACTGTTACAGAAGAC 0.473 35 28 TPO 7173 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 2 1491722 1491722 + Missense_Mutation SNP C C A TCGA-HT-7875-01A-11D-2395-08 TCGA-HT-7875-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx e4c82b3e-cb3a-4e3b-8805-09887d6cf639 3b415304-5b67-40c9-96a3-45e5731b194c TTGGATCTGGCGTCCATCAAC 0.592 59 74 MBD5 55777 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 2 149227787 149227787 + Missense_Mutation SNP G G A TCGA-HT-7875-01A-11D-2395-08 TCGA-HT-7875-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx e4c82b3e-cb3a-4e3b-8805-09887d6cf639 3b415304-5b67-40c9-96a3-45e5731b194c AGGGGAAGCCGTGCACTGCCA 0.448 52 61 IDH1 3417 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 2 209113112 209113112 + Missense_Mutation SNP C C T rs121913500 TCGA-HT-7875-01A-11D-2395-08 TCGA-HT-7875-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx e4c82b3e-cb3a-4e3b-8805-09887d6cf639 3b415304-5b67-40c9-96a3-45e5731b194c ATAAGCATGACGACCTATGAT 0.393 27 54 FAM124B 79843 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 2 225266211 225266211 + Missense_Mutation SNP G G A TCGA-HT-7875-01A-11D-2395-08 TCGA-HT-7875-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx e4c82b3e-cb3a-4e3b-8805-09887d6cf639 3b415304-5b67-40c9-96a3-45e5731b194c CTGCCATGGCGAATGCTGGAG 0.582 31 37 COL7A1 1294 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 3 48609570 48609570 + Missense_Mutation SNP C C T TCGA-HT-7875-01A-11D-2395-08 TCGA-HT-7875-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx e4c82b3e-cb3a-4e3b-8805-09887d6cf639 3b415304-5b67-40c9-96a3-45e5731b194c CTTCTCGCCTCGCGGCCCTGG 0.612 27 30 GABRA4 2557 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 4 46979112 46979112 + Missense_Mutation SNP C C T TCGA-HT-7875-01A-11D-2395-08 TCGA-HT-7875-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx e4c82b3e-cb3a-4e3b-8805-09887d6cf639 3b415304-5b67-40c9-96a3-45e5731b194c CATGACCATCCATGGGAAAAT 0.333 9 41 CLOCK 9575 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 4 56301648 56301648 + Silent SNP T T C TCGA-HT-7875-01A-11D-2395-08 TCGA-HT-7875-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx e4c82b3e-cb3a-4e3b-8805-09887d6cf639 3b415304-5b67-40c9-96a3-45e5731b194c GTTGCTGCTGTTGCTGAGACT 0.527 56 84 NPFFR2 10886 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 4 72994632 72994632 + Silent SNP A A T TCGA-HT-7875-01A-11D-2395-08 TCGA-HT-7875-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx e4c82b3e-cb3a-4e3b-8805-09887d6cf639 3b415304-5b67-40c9-96a3-45e5731b194c ACAATATTATAGCAGGTATGT 0.368 42 57 MARCH6 10299 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 5 10426541 10426541 + Missense_Mutation SNP A A T TCGA-HT-7875-01A-11D-2395-08 TCGA-HT-7875-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx e4c82b3e-cb3a-4e3b-8805-09887d6cf639 3b415304-5b67-40c9-96a3-45e5731b194c CCTTCACTATATTGTTCGTAA 0.403 19 171 ZNF618 114991 hgsc.bcm.edu;broad.mit.edu 37 9 116811917 116811917 + Missense_Mutation SNP G G A TCGA-HT-7875-01A-11D-2395-08 TCGA-HT-7875-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx e4c82b3e-cb3a-4e3b-8805-09887d6cf639 3b415304-5b67-40c9-96a3-45e5731b194c CAACGACGCAGGCACTGTCAG 0.627 12 127 PRSS3P2 154754 broad.mit.edu;ucsc.edu 37 7 142481317 142481317 + RNA SNP G G A TCGA-HT-7875-01A-11D-2395-08 TCGA-HT-7875-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx e4c82b3e-cb3a-4e3b-8805-09887d6cf639 3b415304-5b67-40c9-96a3-45e5731b194c TCTGCCCACTGCCCCTCCAGC 0.547 7 36 SMARCB1 6598 broad.mit.edu;ucsc.edu 37 22 24176338 24176338 + Missense_Mutation SNP C C T TCGA-HT-7875-01A-11D-2395-08 TCGA-HT-7875-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx e4c82b3e-cb3a-4e3b-8805-09887d6cf639 3b415304-5b67-40c9-96a3-45e5731b194c GCGGATGAGGCGTCTTGCCAA 0.647 3 9 PRSS3P2 154754 broad.mit.edu;ucsc.edu 37 7 142481316 142481316 + RNA SNP T T C rs140068138 by1000genomes TCGA-HT-7875-01A-11D-2395-08 TCGA-HT-7875-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx e4c82b3e-cb3a-4e3b-8805-09887d6cf639 3b415304-5b67-40c9-96a3-45e5731b194c CTCTGCCCACTGCCCCTCCAG 0.547 7 36 UBA7 7318 broad.mit.edu;ucsc.edu 37 3 49848836 49848836 + Missense_Mutation SNP C C T rs12486358 TCGA-HT-7875-01A-11D-2395-08 TCGA-HT-7875-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx e4c82b3e-cb3a-4e3b-8805-09887d6cf639 3b415304-5b67-40c9-96a3-45e5731b194c ttccTCTGTCCGCTTCAGTGG 0.602 4 34 CIC 23152 broad.mit.edu;ucsc.edu 37 19 42796331 42796331 + Nonsense_Mutation SNP C C T TCGA-HT-7875-01A-11D-2395-08 TCGA-HT-7875-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx e4c82b3e-cb3a-4e3b-8805-09887d6cf639 3b415304-5b67-40c9-96a3-45e5731b194c CTCTCAGCCTCAGAAGGTCCT 0.662 24 38 FLG 2312 broad.mit.edu;ucsc.edu 37 1 152286155 152286155 + Missense_Mutation SNP C C T TCGA-HT-7875-01A-11D-2395-08 TCGA-HT-7875-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx e4c82b3e-cb3a-4e3b-8805-09887d6cf639 3b415304-5b67-40c9-96a3-45e5731b194c GAAGCTTGCCCGCGCCCAGTG 0.562 117 511 SYCP2L 221711 broad.mit.edu;hgsc.bcm.edu 37 6 10955433 10955436 + Frame_Shift_Del DEL AAGA AAGA - TCGA-HT-7875-01A-11D-2395-08 TCGA-HT-7875-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx e4c82b3e-cb3a-4e3b-8805-09887d6cf639 3b415304-5b67-40c9-96a3-45e5731b194c TCAATAACAGAAGAAAGAGAGTTG 0.451 27 100 PRPF18 8559 broad.mit.edu;hgsc.bcm.edu 37 10 13655742 13655744 + In_Frame_Del DEL TTC TTC - TCGA-HT-7875-01A-11D-2395-08 TCGA-HT-7875-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx e4c82b3e-cb3a-4e3b-8805-09887d6cf639 3b415304-5b67-40c9-96a3-45e5731b194c TTTCAACAGTTTCTTCTTGGCGT 0.429 16 71 NCAM1 4684 broad.mit.edu;hgsc.bcm.edu 37 11 113126648 113126649 + Frame_Shift_Del DEL CT CT - TCGA-HT-7875-01A-11D-2395-08 TCGA-HT-7875-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx e4c82b3e-cb3a-4e3b-8805-09887d6cf639 3b415304-5b67-40c9-96a3-45e5731b194c AGGATGGAAACTCTATTAAAGT 0.5 12 17 ZMYM2 7750 broad.mit.edu;hgsc.bcm.edu 37 13 20577051 20577052 + Frame_Shift_Del DEL TT TT - TCGA-HT-7875-01A-11D-2395-08 TCGA-HT-7875-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx e4c82b3e-cb3a-4e3b-8805-09887d6cf639 3b415304-5b67-40c9-96a3-45e5731b194c GGGTGGACTCTTTATCACCAGT 0.421 100 108 TCF12 6938 broad.mit.edu;hgsc.bcm.edu 37 15 57526268 57526269 + Frame_Shift_Del DEL CA CA - TCGA-HT-7875-01A-11D-2395-08 TCGA-HT-7875-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx e4c82b3e-cb3a-4e3b-8805-09887d6cf639 3b415304-5b67-40c9-96a3-45e5731b194c GCTGGAAGCTCACAGACAGGTG 0.356 15 59 TCF12 6938 broad.mit.edu;hgsc.bcm.edu 37 15 57565414 57565416 + In_Frame_Del DEL TCA TCA - TCGA-HT-7875-01A-11D-2395-08 TCGA-HT-7875-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx e4c82b3e-cb3a-4e3b-8805-09887d6cf639 3b415304-5b67-40c9-96a3-45e5731b194c TCCTTATTCTTCATCAAGCCGTG 0.448 39 20 ZNF689 115509 broad.mit.edu;hgsc.bcm.edu 37 16 30616099 30616101 + In_Frame_Del DEL GAG GAG - TCGA-HT-7875-01A-11D-2395-08 TCGA-HT-7875-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx e4c82b3e-cb3a-4e3b-8805-09887d6cf639 3b415304-5b67-40c9-96a3-45e5731b194c GACCAGGCGAGAGGAGGAGGAGA 0.7 14 38 CEP89 84902 broad.mit.edu;hgsc.bcm.edu 37 19 33392289 33392292 + Frame_Shift_Del DEL CTTT CTTT - TCGA-HT-7875-01A-11D-2395-08 TCGA-HT-7875-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx e4c82b3e-cb3a-4e3b-8805-09887d6cf639 3b415304-5b67-40c9-96a3-45e5731b194c CATCTCAGCCCTTTCTTTCTCTTC 0.451 27 66 CIC 23152 broad.mit.edu;hgsc.bcm.edu 37 19 42796905 42796906 + Frame_Shift_Del DEL TG TG - TCGA-HT-7875-01A-11D-2395-08 TCGA-HT-7875-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx e4c82b3e-cb3a-4e3b-8805-09887d6cf639 3b415304-5b67-40c9-96a3-45e5731b194c TGGTCTACACTGTGGCCACCAG 0.668 19 79 NOTCH1 4851 broad.mit.edu 37 9 139412381 139412381 + Missense_Mutation SNP G G A TCGA-HT-7875-01A-11D-2395-08 TCGA-HT-7875-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx e4c82b3e-cb3a-4e3b-8805-09887d6cf639 3b415304-5b67-40c9-96a3-45e5731b194c TGCTCGCAGGGGTTGGCACCT 0.667 5 67