Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_file Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID ref_context gc_content t_alt_count t_ref_count OR4C16 219428 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 11 55339753 55339753 + Silent SNP C C T TCGA-HT-7902-01A-12D-2395-08 TCGA-HT-7902-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx 97376c7c-f8e6-4dbf-8ba4-473c5d63c770 b902f262-ad73-455f-8fa4-4d3e4babcd7b TCAAGACCAGCCAGGCACTTA 0.388 35 102 GPRC5D 55507 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 12 13103216 13103216 + Missense_Mutation SNP C C T TCGA-HT-7902-01A-12D-2395-08 TCGA-HT-7902-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx 97376c7c-f8e6-4dbf-8ba4-473c5d63c770 b902f262-ad73-455f-8fa4-4d3e4babcd7b ATTGTGACCACGATGCCAAGT 0.532 24 122 TGM5 9333 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 15 43545093 43545093 + Nonsense_Mutation SNP C C T TCGA-HT-7902-01A-12D-2395-08 TCGA-HT-7902-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx 97376c7c-f8e6-4dbf-8ba4-473c5d63c770 b902f262-ad73-455f-8fa4-4d3e4babcd7b AATTCTCACTCCAGTTTCCAT 0.532 17 79 CACNG3 10368 hgsc.bcm.edu;broad.mit.edu 37 16 24372952 24372952 + Missense_Mutation SNP C C A TCGA-HT-7902-01A-12D-2395-08 TCGA-HT-7902-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx 97376c7c-f8e6-4dbf-8ba4-473c5d63c770 b902f262-ad73-455f-8fa4-4d3e4babcd7b AGTTCTCGCTCCACCGAGCCC 0.577 9 111 TIMM44 10469 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 19 7997604 7997604 + Missense_Mutation SNP C C T TCGA-HT-7902-01A-12D-2395-08 TCGA-HT-7902-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx 97376c7c-f8e6-4dbf-8ba4-473c5d63c770 b902f262-ad73-455f-8fa4-4d3e4babcd7b TCCGTGAGCACCTCCGACATC 0.652 19 99 MUC16 94025 hgsc.bcm.edu;broad.mit.edu 37 19 9073488 9073488 + Missense_Mutation SNP G G T TCGA-HT-7902-01A-12D-2395-08 TCGA-HT-7902-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx 97376c7c-f8e6-4dbf-8ba4-473c5d63c770 b902f262-ad73-455f-8fa4-4d3e4babcd7b TGGGAACTTTGTTGACTGAGC 0.458 8 124 HIVEP3 59269 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 1 41990504 41990504 + Missense_Mutation SNP C C T TCGA-HT-7902-01A-12D-2395-08 TCGA-HT-7902-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx 97376c7c-f8e6-4dbf-8ba4-473c5d63c770 b902f262-ad73-455f-8fa4-4d3e4babcd7b CTTCTTGCAGCGAATTCCACA 0.493 19 96 PAPPA2 60676 hgsc.bcm.edu;broad.mit.edu 37 1 176668593 176668593 + Missense_Mutation SNP T T A TCGA-HT-7902-01A-12D-2395-08 TCGA-HT-7902-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx 97376c7c-f8e6-4dbf-8ba4-473c5d63c770 b902f262-ad73-455f-8fa4-4d3e4babcd7b GATGCAGCACTCCTGACTTCT 0.557 9 164 USH2A 7399 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 1 215960035 215960035 + Missense_Mutation SNP C C T TCGA-HT-7902-01A-12D-2395-08 TCGA-HT-7902-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx 97376c7c-f8e6-4dbf-8ba4-473c5d63c770 b902f262-ad73-455f-8fa4-4d3e4babcd7b CGTGTTTACACTCCCTGTATG 0.433 13 99 IDH1 3417 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 2 209113112 209113112 + Missense_Mutation SNP C C T rs121913500 TCGA-HT-7902-01A-12D-2395-08 TCGA-HT-7902-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx 97376c7c-f8e6-4dbf-8ba4-473c5d63c770 b902f262-ad73-455f-8fa4-4d3e4babcd7b ATAAGCATGACGACCTATGAT 0.393 14 59 ECEL1 9427 hgsc.bcm.edu;broad.mit.edu 37 2 233348787 233348787 + Missense_Mutation SNP T T G TCGA-HT-7902-01A-12D-2395-08 TCGA-HT-7902-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx 97376c7c-f8e6-4dbf-8ba4-473c5d63c770 b902f262-ad73-455f-8fa4-4d3e4babcd7b GCGATTGGCCTGGCCCAAGCA 0.617 11 157 RNPEPL1 57140 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 2 241513688 241513688 + Missense_Mutation SNP A A G TCGA-HT-7902-01A-12D-2395-08 TCGA-HT-7902-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx 97376c7c-f8e6-4dbf-8ba4-473c5d63c770 b902f262-ad73-455f-8fa4-4d3e4babcd7b GCTGTCACCAACGCCACGTGG 0.632 23 73 ATRX 546 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 X 76849196 76849196 + Missense_Mutation SNP A A G TCGA-HT-7902-01A-12D-2395-08 TCGA-HT-7902-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx 97376c7c-f8e6-4dbf-8ba4-473c5d63c770 b902f262-ad73-455f-8fa4-4d3e4babcd7b TGCCATTCGAAGAATTTCAAA 0.348 18 72 TENM1 10178 hgsc.bcm.edu;broad.mit.edu 37 X 123517776 123517776 + Silent SNP G G A TCGA-HT-7902-01A-12D-2395-08 TCGA-HT-7902-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx 97376c7c-f8e6-4dbf-8ba4-473c5d63c770 b902f262-ad73-455f-8fa4-4d3e4babcd7b GACCTCGGCTGCTGAACACAG 0.423 8 133 SMARCA1 6594 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 X 128633716 128633716 + Nonsense_Mutation SNP G G A TCGA-HT-7902-01A-12D-2395-08 TCGA-HT-7902-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx 97376c7c-f8e6-4dbf-8ba4-473c5d63c770 b902f262-ad73-455f-8fa4-4d3e4babcd7b CACCATTCTCGTTGCATCTTA 0.318 31 103 PECR 55825 broad.mit.edu;ucsc.edu 37 2 216904042 216904042 + Missense_Mutation SNP C C T TCGA-HT-7902-01A-12D-2395-08 TCGA-HT-7902-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx 97376c7c-f8e6-4dbf-8ba4-473c5d63c770 b902f262-ad73-455f-8fa4-4d3e4babcd7b ATCTTTTTGACAACAGAAAGG 0.483 18 70 ATAD2B 54454 broad.mit.edu;ucsc.edu 37 2 23985167 23985167 + Silent SNP C C G TCGA-HT-7902-01A-12D-2395-08 TCGA-HT-7902-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx 97376c7c-f8e6-4dbf-8ba4-473c5d63c770 b902f262-ad73-455f-8fa4-4d3e4babcd7b TTTCTGTCTTCCGAGCTCCAG 0.388 5 22 MS4A14 84689 broad.mit.edu;ucsc.edu 37 11 60164158 60164158 + Missense_Mutation SNP A A G TCGA-HT-7902-01A-12D-2395-08 TCGA-HT-7902-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx 97376c7c-f8e6-4dbf-8ba4-473c5d63c770 b902f262-ad73-455f-8fa4-4d3e4babcd7b TCTCTGCTGGATTTTCTGAAG 0.443 6 37 TP53 7157 broad.mit.edu;ucsc.edu 37 17 7578190 7578190 + Missense_Mutation SNP T T C rs121912666 TCGA-HT-7902-01A-12D-2395-08 TCGA-HT-7902-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx 97376c7c-f8e6-4dbf-8ba4-473c5d63c770 b902f262-ad73-455f-8fa4-4d3e4babcd7b AGGCGGCTCATAGGGCACCAC 0.557 5 46 TP53 7157 broad.mit.edu 37 17 7578403 7578403 + Missense_Mutation SNP C C T TCGA-HT-7902-01A-12D-2395-08 TCGA-HT-7902-10A-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx 97376c7c-f8e6-4dbf-8ba4-473c5d63c770 b902f262-ad73-455f-8fa4-4d3e4babcd7b ATGGTGGGGGCAGCGCCTCAC 0.652 16 61