Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	ref_context	gc_content	t_alt_count	t_ref_count
TP53	7157	hgsc.bcm.edu;broad.mit.edu	37	17	7577117	7577117	+	Missense_Mutation	SNP	A	A	C			TCGA-HT-8018-01A-11D-2395-08	TCGA-HT-8018-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	e43ccfe7-fa40-4168-925e-cda8c41db3ca	90acc6c9-bfed-426d-b85b-590b0e9535d6	ACAGGCACAAACACGCACCTC	0.552	13	42
TP53	7157	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	17	7578212	7578212	+	Nonsense_Mutation	SNP	G	G	A			TCGA-HT-8018-01A-11D-2395-08	TCGA-HT-8018-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	e43ccfe7-fa40-4168-925e-cda8c41db3ca	90acc6c9-bfed-426d-b85b-590b0e9535d6	ACACTATGTCGAAAAGTGTTT	0.532	6	38
NPHS1	4868	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	19	36333388	36333388	+	Missense_Mutation	SNP	C	C	T	rs146400394		TCGA-HT-8018-01A-11D-2395-08	TCGA-HT-8018-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	e43ccfe7-fa40-4168-925e-cda8c41db3ca	90acc6c9-bfed-426d-b85b-590b0e9535d6	AATCCGCAGGCGCCCCGTTGG	0.607	18	107
SHKBP1	92799	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	19	41094661	41094661	+	Missense_Mutation	SNP	G	G	A			TCGA-HT-8018-01A-11D-2395-08	TCGA-HT-8018-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	e43ccfe7-fa40-4168-925e-cda8c41db3ca	90acc6c9-bfed-426d-b85b-590b0e9535d6	TGGGCATGGCGGCTGCAGTGC	0.617	9	64
MYT1	4661	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	20	62839768	62839768	+	Nonsense_Mutation	SNP	C	C	T			TCGA-HT-8018-01A-11D-2395-08	TCGA-HT-8018-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	e43ccfe7-fa40-4168-925e-cda8c41db3ca	90acc6c9-bfed-426d-b85b-590b0e9535d6	CGAGCAGAGCCAGCTGGGCCT	0.672	19	52
GGT5	2687	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	22	24622165	24622165	+	Missense_Mutation	SNP	C	C	A			TCGA-HT-8018-01A-11D-2395-08	TCGA-HT-8018-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	e43ccfe7-fa40-4168-925e-cda8c41db3ca	90acc6c9-bfed-426d-b85b-590b0e9535d6	AGCTGGTGGTCCCCCCGGCCA	0.697	12	54
BPIFC	254240	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	22	32833775	32833775	+	Missense_Mutation	SNP	G	G	C			TCGA-HT-8018-01A-11D-2395-08	TCGA-HT-8018-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	e43ccfe7-fa40-4168-925e-cda8c41db3ca	90acc6c9-bfed-426d-b85b-590b0e9535d6	GTAGTTCTCAGTAATTTCTGG	0.358	9	31
IDH1	3417	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	2	209113112	209113112	+	Missense_Mutation	SNP	C	C	T	rs121913500		TCGA-HT-8018-01A-11D-2395-08	TCGA-HT-8018-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	e43ccfe7-fa40-4168-925e-cda8c41db3ca	90acc6c9-bfed-426d-b85b-590b0e9535d6	ATAAGCATGACGACCTATGAT	0.393	18	89
RBMS3	27303	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	3	29323193	29323193	+	Silent	SNP	G	G	A			TCGA-HT-8018-01A-11D-2395-08	TCGA-HT-8018-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	e43ccfe7-fa40-4168-925e-cda8c41db3ca	90acc6c9-bfed-426d-b85b-590b0e9535d6	GCCTGGATCAGCCACAAATGT	0.522	9	74
QRICH1	54870	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	3	49070172	49070172	+	Missense_Mutation	SNP	T	T	C			TCGA-HT-8018-01A-11D-2395-08	TCGA-HT-8018-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	e43ccfe7-fa40-4168-925e-cda8c41db3ca	90acc6c9-bfed-426d-b85b-590b0e9535d6	AAGGCCAGCTTCATGTGCTGG	0.502	24	105
RGS12	6002	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	4	3319342	3319342	+	Missense_Mutation	SNP	G	G	A			TCGA-HT-8018-01A-11D-2395-08	TCGA-HT-8018-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	e43ccfe7-fa40-4168-925e-cda8c41db3ca	90acc6c9-bfed-426d-b85b-590b0e9535d6	GACCCCGAAGGGAGCCCCCCA	0.677	29	135
TMEM63B	55362	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	6	44118317	44118317	+	Missense_Mutation	SNP	C	C	T			TCGA-HT-8018-01A-11D-2395-08	TCGA-HT-8018-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	e43ccfe7-fa40-4168-925e-cda8c41db3ca	90acc6c9-bfed-426d-b85b-590b0e9535d6	CCTCTTCTTCCGCTGGCTCTT	0.572	19	82
IFRD1	3475	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	7	112112278	112112278	+	Missense_Mutation	SNP	G	G	A			TCGA-HT-8018-01A-11D-2395-08	TCGA-HT-8018-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	e43ccfe7-fa40-4168-925e-cda8c41db3ca	90acc6c9-bfed-426d-b85b-590b0e9535d6	GGTTAGGAACGGGATTTTCCA	0.383	18	71
ATRX	546	hgsc.bcm.edu;broad.mit.edu	37	X	76931745	76931745	+	Missense_Mutation	SNP	T	T	C			TCGA-HT-8018-01A-11D-2395-08	TCGA-HT-8018-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	e43ccfe7-fa40-4168-925e-cda8c41db3ca	90acc6c9-bfed-426d-b85b-590b0e9535d6	ATTGTCGTCATCATCATCATC	0.373	7	103
CYP11B1	1584	broad.mit.edu;ucsc.edu	37	8	143960802	143960802	+	Missense_Mutation	SNP	G	G	T			TCGA-HT-8018-01A-11D-2395-08	TCGA-HT-8018-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	e43ccfe7-fa40-4168-925e-cda8c41db3ca	90acc6c9-bfed-426d-b85b-590b0e9535d6	AGCGAGCTGGGATTTGCTCTG	0.602	9	37
VPS16	64601	broad.mit.edu;hgsc.bcm.edu	37	20	2840757	2840759	+	In_Frame_Del	DEL	ATA	ATA	-			TCGA-HT-8018-01A-11D-2395-08	TCGA-HT-8018-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	e43ccfe7-fa40-4168-925e-cda8c41db3ca	90acc6c9-bfed-426d-b85b-590b0e9535d6	CCAGTGCTCGATATATACTCTGC	0.591	22	88